Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0020018

Physical Location & Seq

Genomic Coordinates Forward (+)

20923218 .. 20925749

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATCTTAGTCAGGAATACTAATGCAATAGATGGCAGTAAAGGTATAGGAATTGCAGAGCTTTCCAAGTACTTTGGCGCTTATTCATATAAGAAAGGAAAACAATCGTATGGCCGTCAGGGACACCGTGGGATGATCATTTTAATTTTTGTTAAGTCGCTAAGGGGTTTCTTAGAGGCTAAGCGTCTGGAGAGGGATCTTGCAGATCAAGGATCTGGAACGAATGATTGGACCGAGCACGCTGTCGATGCTTCTGGTAAGCGATTGCTTTATGGTTACATGACAAATGAAGAAGATTTGATTACATTCAAATCGAAGGTAAAATATGAGATCAAGTCATTGCAGCAAATCGTTCAAGAGGAGAATGATCAATCGGAGGATTATGGTTCAGAGAAGCTACGACAGTATTTTGGCATAAACATGGGCATGATCTCACATTTGCCTGATAATGTTCTTGTAACTATCATTTCCTTCCTGGCATTCCGAGAGGCGGCCAGAACTTCGGTTCTCGCAAGGACATGGCAGAACATATGGCGTCAAATGCGAAACATTGAATTTAATGAGCTTTTCTTCTCCAACATTGGTAAAGATGAAGATGATGCTAGGAGAATAGCTTTCGTCAACTTTCTACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0070013 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XS zf-XS

Protein Analysis

212

Amino Acids

24.43

Weight (kDa)

8.67

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XS	PF03468	11 - 100	1.4e-15	XS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020018)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019815
rosa_multiflora	Rmu_ssc0000467.1_g000020
rosa_roxburghii	Rroxscaffold_4G00322090
rosa_samantha	Rh1AG088900 Rh1AG089000 Rh6BG159300 Rh6DG144700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	2 cut(s)	204, 220
AcoI	YGGCCR	2 cut(s)	112, 492
AcsI	RAATTY	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	535
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	310, 356, 554
AjnI	CCWGG	1 cut(s)	474
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AluBI	AGCT	4 cut(s)	61, 397, 565, 614
AluI	AGCT	4 cut(s)	61, 397, 565, 614
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	204, 220
AoxI	GGCC	2 cut(s)	112, 492
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	476
BclI	TGATCA	2 cut(s)	135, 367
BfaI	CTAG	2 cut(s)	603, 637
BfmI	CTRYAG	1 cut(s)	629
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	2 cut(s)	344, 492
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	345, 493
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	238, 589
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMI	GCAATG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	114, 494
BsiHKAI	GWGCWC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	114, 494
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	2 cut(s)	114, 494
BspPI	GGATC	2 cut(s)	204, 220
BsrDI	GCAATG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
BssNI	GRCGYC	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	128, 405
BstACI	GRCGYC	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	4 cut(s)	7, 161, 172, 180
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	8 cut(s)	6, 138, 199, 208, 215, 333, 370, 432
BstMBI	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 541
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	196, 212
BstYI	RGATCY	2 cut(s)	196, 212
BsuRI	GGCC	2 cut(s)	114, 494
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	2 cut(s)	173, 524
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	4 cut(s)	280, 421, 427, 519
CviJI	RGCY	7 cut(s)	61, 114, 179, 397, 494, 565, 614
CviKI_1	RGCY	7 cut(s)	61, 114, 179, 397, 494, 565, 614
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	7, 161, 172, 180
DpnI	GATC	8 cut(s)	5, 137, 198, 207, 214, 332, 369, 431
DpnII	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
EaeI	YGGCCR	2 cut(s)	112, 492
Eco47I	GGWCC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	474
FaeI	CATG	4 cut(s)	283, 424, 430, 522
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	4 cut(s)	279, 420, 426, 518
FauNDI	CATATG	1 cut(s)	530
FbaI	TGATCA	2 cut(s)	135, 367
Fnu4HI	GCNGC	2 cut(s)	344, 492
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	344, 492
FspBI	CTAG	2 cut(s)	603, 637
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	344, 492
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	114, 494
HgaI	GACGC	2 cut(s)	173, 524
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	535
Hin1II	CATG	4 cut(s)	283, 424, 430, 522
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	3 cut(s)	376, 391, 485
Hpy188III	TCNNGA	4 cut(s)	13, 188, 216, 356
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	2 cut(s)	310, 481
HpyCH4III	ACNGT	2 cut(s)	128, 405
HpyCH4V	TGCA	4 cut(s)	26, 56, 203, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 541
HpyF3I	CTNAG	4 cut(s)	7, 161, 172, 180
Hsp92I	GRCGYC	1 cut(s)	535
Hsp92II	CATG	4 cut(s)	283, 424, 430, 522
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	2 cut(s)	135, 367
Kzo9I	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
LpnPI	CCDG	8 cut(s)	104, 173, 201, 240, 456, 461, 488, 508
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	238, 589
MaeI	CTAG	2 cut(s)	603, 637
MaeIII	GTNAC	2 cut(s)	275, 457
MalI	GATC	8 cut(s)	5, 137, 198, 207, 214, 332, 369, 431
MboI	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
MboII	GAAGA	4 cut(s)	302, 305, 562, 605
MflI	RGATCY	2 cut(s)	196, 212
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	3 cut(s)	51, 144, 554
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	5 cut(s)	169, 186, 352, 370, 481
MseI	TTAA	3 cut(s)	143, 153, 558
MslI	CAYNNNNRTG	2 cut(s)	419, 425
MspR9I	CCNGG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	248, 541
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
NlaIII	CATG	4 cut(s)	283, 424, 430, 522
PctI	GAATGC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	345, 493
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	196, 212
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	419, 425
SaqAI	TTAA	3 cut(s)	143, 153, 558
SatI	GCNGC	2 cut(s)	344, 492
Sau3AI	GATC	8 cut(s)	3, 135, 196, 205, 212, 330, 367, 429
Sau96I	GGNCC	1 cut(s)	231
ScaI	AGTACT	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	6 cut(s)	46, 63, 321, 399, 567, 616
SfaNI	GCATC	2 cut(s)	238, 589
SfcI	CTRYAG	1 cut(s)	629
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	419, 425
Sse9I	AATT	3 cut(s)	51, 144, 554
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	2 cut(s)	603, 637
StyD4I	CCNGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	128, 405
TaqI	TCGA	2 cut(s)	246, 314
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	51, 144, 554
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	143, 153, 558
Tru9I	TTAA	3 cut(s)	143, 153, 558
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	75, 303, 606
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	554
XspI	CTAG	2 cut(s)	603, 637
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.