Rroxscaffold_1G00026130

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0021704
Physical Location & Seq
Forward (+)
32842753 .. 32848902
6150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026130.1

Sequence Viewer

Length: 459 bp
ATGGAGAGCGAATGGCTTGGGAGCTCTTCAAATGTACCGAGTACAAATGGGCAGCAAGATCTTGGATGGCTTGGGAAACGAGATAAGGAAGGTAGAGTTAGTAGAAAGCGAATGATATGGCTCGTGCTCCGGTGGGTAGGGCGAGCTTTTGTGCGAAGGTCAAGACCTTCAAGTAAGAACATGGCTGAAGGACTAGTTAGCATTCTCATCGACCGTTTGGTTACTATCACCACGGACAAGATCCATGGAGAGTTAAACTTGGTTACCGGAGTTGAGAAAGAAGTCAAAACTCTCACCAACAATGCCTTCGAAAGCTTCATTTCGATTTCTCTTCTTAACCAGTGCCGCTACCGCCTTTGTCTTTTGGAGCCGAACGGTAATGGGCAGTTGCGTCACGGGGGACAAGCAAAAAGAAAAAAAGAGGAGGGTCAAAAGCACGAAGCATGGAAACGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

152

Amino Acids

17.4

Weight (kDa)

10.32

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 346, 352
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 2 cut(s) 36, 43
AgsI TTSAA 2 cut(s) 30, 171
AhlI ACTAGT 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 3 cut(s) 24, 146, 315
AluI AGCT 3 cut(s) 24, 146, 315
Alw21I GWGCWC 2 cut(s) 26, 129
AlwI GGATC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 220, 286
AsuII TTCGAA 1 cut(s) 309
BanII GRGCYC 1 cut(s) 26
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 26, 129
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BcuI ACTAGT 1 cut(s) 193
BfaI CTAG 1 cut(s) 194
BglII AGATCT 1 cut(s) 58
BisI GCNGC 2 cut(s) 53, 346
BlsI GCNGC 2 cut(s) 54, 347
BmiI GGNNCC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 231, 244
BsaWI WCCGGW 2 cut(s) 129, 266
Bse1I ACTGG 1 cut(s) 340
BseDI CCNNGG 2 cut(s) 231, 244
BseGI GGATG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 26, 129
BsiSI CCGG 2 cut(s) 130, 267
BslFI GGGAC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 201
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 26, 129
Bsp143I GATC 2 cut(s) 58, 240
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 2 cut(s) 346, 352
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 309
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 231, 244
BssMI GATC 2 cut(s) 58, 240
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 215, 377
Bst6I CTCTTC 2 cut(s) 31, 336
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 144
BstDSI CCRYGG 2 cut(s) 231, 244
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 2 cut(s) 61, 243
BstMBI GATC 2 cut(s) 58, 240
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstPI GGTNACC 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 2 cut(s) 58, 240
BstYI RGATCY 2 cut(s) 58, 240
BtgI CCRYGG 2 cut(s) 231, 244
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 144
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 35, 42
CviAII CATG 3 cut(s) 181, 245, 444
CviJI RGCY 8 cut(s) 16, 24, 70, 121, 146, 185, 315, 370
CviKI_1 RGCY 8 cut(s) 16, 24, 70, 121, 146, 185, 315, 370
CviQI GTAC 2 cut(s) 35, 42
DpnI GATC 2 cut(s) 60, 242
DpnII GATC 2 cut(s) 58, 240
Eam1104I CTCTTC 2 cut(s) 31, 336
EarI CTCTTC 2 cut(s) 31, 336
Ecl136II GAGCTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 24
EcoO65I GGTNACC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 3 cut(s) 184, 248, 447
FaiI YATR 4 cut(s) 118, 182, 246, 445
FaqI GGGAC 1 cut(s) 414
FatI CATG 3 cut(s) 180, 244, 443
Fnu4HI GCNGC 2 cut(s) 53, 346
FokI GGATG 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 53, 346
FspBI CTAG 1 cut(s) 194
GluI GCNGC 2 cut(s) 53, 346
HapII CCGG 2 cut(s) 130, 267
HgaI GACGC 1 cut(s) 380
Hin1II CATG 3 cut(s) 184, 248, 447
HindIII AAGCTT 1 cut(s) 313
HpaII CCGG 2 cut(s) 130, 267
HphI GGTGA 2 cut(s) 220, 286
Hpy188III TCNNGA 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 456
HpyAV CCTTC 5 cut(s) 83, 150, 177, 182, 316
HpyCH4III ACNGT 2 cut(s) 215, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
Hsp92II CATG 3 cut(s) 184, 248, 447
Kzo9I GATC 2 cut(s) 58, 240
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 3 cut(s) 21, 132, 367
LpnPI CCDG 3 cut(s) 143, 280, 353
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 3 cut(s) 220, 262, 392
MalI GATC 2 cut(s) 60, 242
MboI GATC 2 cut(s) 58, 240
MboII GAAGA 2 cut(s) 18, 323
MflI RGATCY 2 cut(s) 58, 240
MhlI GDGCHC 2 cut(s) 26, 129
MnlI CCTC 2 cut(s) 415, 418
MseI TTAA 2 cut(s) 254, 336
MspI CCGG 2 cut(s) 130, 267
Mva1269I GAATGC 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 351
NcoI CCATGG 1 cut(s) 244
NdeII GATC 2 cut(s) 58, 240
NlaIII CATG 3 cut(s) 184, 248, 447
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 392
NspV TTCGAA 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 31
PctI GAATGC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 54, 347
Psp124BI GAGCTC 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 369
PsuI RGATCY 2 cut(s) 58, 240
RsaI GTAC 2 cut(s) 36, 43
RsaNI GTAC 2 cut(s) 35, 42
SacI GAGCTC 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 254, 336
SatI GCNGC 2 cut(s) 53, 346
Sau3AI GATC 2 cut(s) 58, 240
SduI GDGCHC 2 cut(s) 26, 129
SetI ASST 6 cut(s) 26, 94, 148, 161, 169, 317
SfuI TTCGAA 1 cut(s) 309
SpeI ACTAGT 1 cut(s) 193
SsiI CCGC 2 cut(s) 346, 352
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 26
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 215, 377
TaqI TCGA 3 cut(s) 210, 309, 323
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 348
Tru1I TTAA 2 cut(s) 254, 336
Tru9I TTAA 2 cut(s) 254, 336
TscAI CASTG 1 cut(s) 347
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 307
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 347
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.