Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0021704

Physical Location & Seq

Genomic Coordinates Reverse (-)

26857205 .. 26857776

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTCGACGTTCACGCTCGTTTTGTCGATGCTGTTCATGCGGACGGTGGTGCTTCGATGCTCATGGCCTTCGGAATCGTGTCGCTTCCGGAGAGCACCGACGACTCTTTGCCGAACGATCTCGGTTCCTTCCGCCGCAGGATCGTTGAGAGAAGTGAGGGATTGGGGAAGAGAGAGAAGCAAGTGTACCGAAGTGATCTTTTGGGAGTCCGAGCTTTCATATATCACAATTTCTTGTCCAAGGAAGAATATGATTACTTGATAAGGCTTGCTACACCTCACATGGCAAAGTCGACCGTTGTCGATAGCAAGACCGGGAAGAGCAAAGATAGTGGGAGCATGGGAGAAGTTGAGATCGCTTGTAAAGAGGATAAGAATATCCCATTCCATTTTCTGCTAAATACCACCTCATTCGTCGAGGATCAATACAAACTCATCATGGCTTCAAGAGGTGATCAATCGGGATTTCCGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

5.73

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021704)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00026130 Rroxscaffold_3G00238630 Rroxscaffold_3G00238640 Rroxscaffold_4G00321640 Rroxscaffold_4G00322070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	6, 293
AccIII	TCCGGA	2 cut(s)	88, 469
AciI	CCGC	3 cut(s)	41, 133, 136
AclWI	GGATC	2 cut(s)	149, 429
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	447
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	149, 429
Aor13HI	TCCGGA	2 cut(s)	88, 469
AoxI	GGCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
Bbv12I	GWGCWC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	475
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	19, 48
BoxI	GACNNNNGTC	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	2 cut(s)	88, 469
BseAI	TCCGGA	2 cut(s)	88, 469
BseDI	CCNNGG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	89, 315, 470
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp13I	TCCGGA	2 cut(s)	88, 469
Bsp143I	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
BspACI	CCGC	3 cut(s)	41, 133, 136
BspANI	GGCC	1 cut(s)	68
BspEI	TCCGGA	2 cut(s)	88, 469
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	149, 429
BspQI	GCTCTTC	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	47, 298
Bst6I	CTCTTC	2 cut(s)	164, 314
BstC8I	GCNNGC	1 cut(s)	270
BstKTI	GATC	6 cut(s)	121, 144, 199, 357, 424, 457
BstMBI	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstPAI	GACNNNNGTC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	5 cut(s)	38, 64, 283, 340, 439
CviJI	RGCY	4 cut(s)	68, 215, 268, 443
CviKI_1	RGCY	4 cut(s)	68, 215, 268, 443
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	6 cut(s)	120, 143, 198, 356, 423, 456
DpnII	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
Eam1104I	CTCTTC	2 cut(s)	164, 314
EarI	CTCTTC	2 cut(s)	164, 314
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	5 cut(s)	41, 67, 286, 343, 442
FaiI	YATR	8 cut(s)	39, 65, 221, 223, 252, 284, 341, 440
FatI	CATG	5 cut(s)	37, 63, 282, 339, 438
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	2 cut(s)	6, 293
Fnu4HI	GCNGC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	475
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	3 cut(s)	89, 315, 470
Hin1II	CATG	5 cut(s)	41, 67, 286, 343, 442
HincII	GTYRAC	2 cut(s)	7, 294
HindII	GTYRAC	2 cut(s)	7, 294
HinfI	GANTC	3 cut(s)	75, 104, 207
HpaII	CCGG	3 cut(s)	89, 315, 470
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	4 cut(s)	7, 13, 187, 294
Hpy188I	TCNGA	2 cut(s)	74, 212
Hpy188III	TCNNGA	4 cut(s)	89, 447, 462, 470
Hpy8I	GTNNAC	4 cut(s)	7, 13, 187, 294
Hpy99I	CGWCG	3 cut(s)	11, 104, 419
HpyAV	CCTTC	2 cut(s)	79, 139
HpyCH4III	ACNGT	2 cut(s)	47, 298
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	41, 67, 286, 343, 442
Kpn2I	TCCGGA	2 cut(s)	88, 469
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	3 cut(s)	102, 124, 328
LweI	GCATC	2 cut(s)	19, 48
MaeI	CTAG	1 cut(s)	475
MaeII	ACGT	1 cut(s)	9
MalI	GATC	6 cut(s)	120, 143, 198, 356, 423, 456
MboI	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
MboII	GAAGA	3 cut(s)	181, 257, 331
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	98, 216
MnlI	CCTC	6 cut(s)	151, 288, 361, 412, 418, 443
MroI	TCCGGA	2 cut(s)	88, 469
MspI	CCGG	3 cut(s)	89, 315, 470
MspR9I	CCNGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
NlaIII	CATG	5 cut(s)	41, 67, 286, 343, 442
NlaIV	GGNNCC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	2 cut(s)	98, 215
PpsI	GAGTC	2 cut(s)	98, 215
PshAI	GACNNNNGTC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SalI	GTCGAC	2 cut(s)	5, 292
SapI	GCTCTTC	1 cut(s)	314
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	6 cut(s)	118, 141, 196, 354, 421, 454
SchI	GAGTC	2 cut(s)	98, 216
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	5 cut(s)	12, 217, 280, 410, 454
SfaNI	GCATC	2 cut(s)	19, 48
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	41, 133, 136
SspMI	CTAG	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	47, 298
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	6 cut(s)	6, 27, 56, 293, 303, 417
TasI	AATT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	26, 208
XmiI	GTMKAC	2 cut(s)	6, 293
XspI	CTAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.