Rroxscaffold_3G00238640

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0021704
Physical Location & Seq
Reverse (-)
26858044 .. 26862553
4510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238640.1

Sequence Viewer

Length: 450 bp
ATGATGGTGTTCGATATTGAAGAGCCGCAGCTTGGAGATCATAACCATCGGTTCTGGTTGATGATCGAGAGGTCGATGGTCTTCAAGGAACGTAGCTCTTCGATTGAAGGGAGCGTGTGGAGGCCGAAGTTGATGCAAGGTCGTGTTGAGCTTAGGTCTTGCTCGGAATTGGAAGCTAGTTCACACAACGGTGGAGGTGGCAAGAAGGGGTGGCCGGAGACCATGATCTCCATTGGCGAAGAACAAGCAGAGGAAAAGAACATGGCTGAAGGACTAGTTAGTGTTCTCATCGACCGTTTGGTTACTATCACCACGGACAAGATCCAAGGAGAGTTAAACTTGGTTACCGGAGTTGAGAAAGAAGTCACAACTCTCACCAGCAATCTCACAAAGAATTCAATCTATGCTCAAGGATGCGAGAGGGAGACAAGCGGTGGAGGCCGACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

149

Amino Acids

16.63

Weight (kDa)

5.31

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 26, 432
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 4 cut(s) 20, 85, 107, 399
AhlI ACTAGT 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 4 cut(s) 31, 96, 151, 176
AluI AGCT 4 cut(s) 31, 96, 151, 176
Alw26I GTCTC 2 cut(s) 212, 419
AlwI GGATC 1 cut(s) 316
AoxI GGCC 3 cut(s) 122, 212, 439
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 301, 367
BbsI GAAGAC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 54, 70
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 2 cut(s) 212, 419
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 2 cut(s) 177, 275
BisI GCNGC 2 cut(s) 26, 29
BlsI GCNGC 2 cut(s) 27, 30
BmsI GCATC 2 cut(s) 123, 404
BpiI GAAGAC 1 cut(s) 73
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 312, 325
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 312, 325
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 3 cut(s) 124, 214, 441
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 2 cut(s) 215, 348
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 2 cut(s) 212, 419
BsnI GGCC 3 cut(s) 124, 214, 441
Bso31I GGTCTC 1 cut(s) 212
Bsp143I GATC 4 cut(s) 37, 63, 225, 321
BspACI CCGC 2 cut(s) 26, 432
BspANI GGCC 3 cut(s) 124, 214, 441
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 2 cut(s) 15, 103
BspTNI GGTCTC 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 312, 325
BssMI GATC 4 cut(s) 37, 63, 225, 321
BssT1I CCWWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 191, 296
Bst6I CTCTTC 2 cut(s) 15, 103
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 419
BstKTI GATC 4 cut(s) 40, 66, 228, 324
BstMAI GTCTC 2 cut(s) 212, 419
BstMBI GATC 4 cut(s) 37, 63, 225, 321
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 438
BstPI GGTNACC 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 3 cut(s) 124, 214, 441
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 419
CviAII CATG 2 cut(s) 223, 262
CviJI RGCY 9 cut(s) 25, 31, 96, 124, 151, 176, 214, 266, 441
CviKI_1 RGCY 9 cut(s) 25, 31, 96, 124, 151, 176, 214, 266, 441
DdeI CTNAG 1 cut(s) 152
DpnI GATC 4 cut(s) 39, 65, 227, 323
DpnII GATC 4 cut(s) 37, 63, 225, 321
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 15, 103
EarI CTCTTC 2 cut(s) 15, 103
Eco130I CCWWGG 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 288
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 226, 265
FaiI YATR 4 cut(s) 42, 224, 263, 405
FatI CATG 2 cut(s) 222, 261
Fnu4HI GCNGC 2 cut(s) 26, 29
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 2 cut(s) 26, 29
FspBI CTAG 2 cut(s) 177, 275
GluI GCNGC 2 cut(s) 26, 29
HaeIII GGCC 3 cut(s) 124, 214, 441
HapII CCGG 2 cut(s) 215, 348
Hin1II CATG 2 cut(s) 226, 265
HpaII CCGG 2 cut(s) 215, 348
HphI GGTGA 2 cut(s) 301, 367
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 182
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 3 cut(s) 101, 199, 263
HpyCH4III ACNGT 2 cut(s) 191, 296
HpyCH4IV ACGT 2 cut(s) 91, 445
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 438
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 91, 445
Hsp92II CATG 2 cut(s) 226, 265
Kzo9I GATC 4 cut(s) 37, 63, 225, 321
LguI GCTCTTC 2 cut(s) 15, 103
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 4 cut(s) 40, 228, 361, 391
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 123, 404
MaeI CTAG 2 cut(s) 177, 275
MaeII ACGT 2 cut(s) 91, 445
MaeIII GTNAC 3 cut(s) 301, 343, 364
MalI GATC 4 cut(s) 39, 65, 227, 323
MboI GATC 4 cut(s) 37, 63, 225, 321
MboII GAAGA 4 cut(s) 32, 73, 90, 251
MflI RGATCY 1 cut(s) 321
MluCI AATT 2 cut(s) 167, 394
MnlI CCTC 6 cut(s) 63, 114, 188, 244, 414, 431
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 2 cut(s) 215, 348
MwoI GCNNNNNNNGC 1 cut(s) 438
NdeII GATC 4 cut(s) 37, 63, 225, 321
NlaIII CATG 2 cut(s) 226, 265
NmuCI GTSAC 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 189
PciSI GCTCTTC 2 cut(s) 15, 103
PkrI GCNGC 2 cut(s) 27, 30
PspEI GGTNACC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 189
SapI GCTCTTC 2 cut(s) 15, 103
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 2 cut(s) 26, 29
Sau3AI GATC 4 cut(s) 37, 63, 225, 321
SfaNI GCATC 2 cut(s) 123, 404
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 2 cut(s) 167, 394
SsiI CCGC 2 cut(s) 26, 432
SspMI CTAG 2 cut(s) 177, 275
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 2 cut(s) 191, 296
TaiI ACGT 2 cut(s) 94, 448
TaqI TCGA 5 cut(s) 12, 66, 74, 101, 291
TasI AATT 2 cut(s) 167, 394
TauI GCSGC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 364
TspGWI ACGGA 1 cut(s) 329
XapI RAATTY 1 cut(s) 394
XspI CTAG 2 cut(s) 177, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.