Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003776

Physical Location & Seq

Genomic Coordinates Forward (+)

36161727 .. 36173221

Gene Structure 11495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCAAGGACCCCAACGATTTTCAGCAGGAGATTACCGACGGTGATGTTGAGGTCATATTGGGAGACAAGCATTGCTTCGTCGTACACTCGATTGAGATTTGCAACTGTGGAAGTTGTTTTGGCGGTTGTCAATTCAGTTGCAAACACCATCGGTGCTTACGCAATAATTGATGTTGGTGCTGGTCGAGCAGAAAATAAAGTAATTAAAAATACTCGCTCCGCCGACCATGGTCAACGGTGCACACCCTTAATGAGATCATCATCCCACCTTGTGCATGAACTCCGCTTCGCTGGCCAAAACTCAGCCCCTGCGGCCAAGGTCTCCACTAAACTCAAAGCCTCCGCCGAGTTCCAAGACCACCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.42

Weight (kDa)

10.64

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16650 AT1G16650 AT1G16650
fragaria_vesca	FvH4_3g16020 FvH4_3g16020 FvH4_3g16020 FvH4_3g16020 FvH4_3g16020 FvH4_3g16020 FvH4_3g16020
malus_domestica	MD05G1215600.v1.1
prunus_persica	Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1 Prupe.4G143400_v2.0.a1
pyrus_communis	pycom05g19850
rosa_chinensis	RchiOBHm_Chr5g0027001
rosa_laevigata	RLG00000032976
rosa_multiflora	Rmu_sc0000882.1_g000009
rosa_roxburghii	Rroxscaffold_1G00028380 Rroxscaffold_1G00052490
rosa_rugosa	Rorug05G0096500 Rorug05G0096500
rosa_samantha	Rh5AG189900 Rh5BG187500 Rh5CG207200 Rh5DG189200
rosa_wichuraiana	Rw5G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	125, 222, 286, 314, 345, 364
AcoI	YGGCCR	2 cut(s)	295, 315
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	59, 328
Alw44I	GTGCAC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	295, 315
ApaLI	GTGCAC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	245
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	59, 328
BfaI	CTAG	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	11
BoxI	GACNNNNGTC	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	229, 318
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	229, 318
BseGI	GGATG	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	245
BshFI	GGCC	2 cut(s)	297, 317
BsiHKAI	GWGCWC	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	59, 328
BsnI	GGCC	2 cut(s)	297, 317
Bso31I	GGTCTC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	257
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	6 cut(s)	125, 222, 286, 314, 345, 364
BspANI	GGCC	2 cut(s)	297, 317
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	229, 318
BssMI	GATC	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	229, 318
Bst4CI	ACNGT	3 cut(s)	43, 109, 240
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	2 cut(s)	59, 328
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 294, 314
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	297, 317
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	230, 278
CviJI	RGCY	4 cut(s)	297, 308, 317, 341
CviKI_1	RGCY	4 cut(s)	297, 308, 317, 341
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
DraIII	CACNNNGTG	1 cut(s)	274
EaeI	YGGCCR	2 cut(s)	295, 315
EciI	GGCGGA	2 cut(s)	211, 334
Eco130I	CCWWGG	2 cut(s)	229, 318
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	9
EcoT14I	CCWWGG	2 cut(s)	229, 318
ErhI	CCWWGG	2 cut(s)	229, 318
FaeI	CATG	2 cut(s)	233, 281
FaiI	YATR	3 cut(s)	58, 231, 279
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	2 cut(s)	229, 277
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	297, 317
Hin1II	CATG	2 cut(s)	233, 281
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	87, 236, 243
Hpy8I	GTNNAC	3 cut(s)	87, 236, 243
Hpy99I	CGWCG	2 cut(s)	43, 85
HpyCH4III	ACNGT	3 cut(s)	43, 109, 240
HpyCH4V	TGCA	4 cut(s)	104, 143, 243, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 294, 314
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	2 cut(s)	233, 281
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	4 cut(s)	13, 168, 279, 324
MaeI	CTAG	1 cut(s)	367
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	245
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	3 cut(s)	133, 168, 204
MluNI	TGGCCA	1 cut(s)	297
MnlI	CCTC	2 cut(s)	45, 352
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	2 cut(s)	207, 251
Msp20I	TGGCCA	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	188, 294, 314
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	233, 281
NlaIV	GGNNCC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	9
PspPPI	RGGWCCY	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	207, 251
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	257
Sau96I	GGNCC	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	3 cut(s)	56, 273, 324
SinI	GGWCC	1 cut(s)	9
Sse9I	AATT	3 cut(s)	133, 168, 204
SsiI	CCGC	6 cut(s)	125, 222, 286, 314, 345, 364
SspMI	CTAG	1 cut(s)	367
StyI	CCWWGG	2 cut(s)	229, 318
TaaI	ACNGT	3 cut(s)	43, 109, 240
TaqI	TCGA	2 cut(s)	91, 187
TasI	AATT	3 cut(s)	133, 168, 204
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	207, 251
Tru9I	TTAA	2 cut(s)	207, 251
TspDTI	ATGAA	1 cut(s)	294
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	9
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.