Rroxscaffold_1G00057950

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019425
Physical Location & Seq
Forward (+)
79915472 .. 79917015
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057950.1

Sequence Viewer

Length: 1443 bp
ATGCATCTTCCTCTGAAAAAAGTCCCCATTTACACACCAAAATGGCTAGCAGCTTGTGCATCAATGTTTGCTTCCTTGATGCTTATTCAGTCCTTGACTAACAATTTTTATACCTTGATCCCCCAACCCCTCCAGAGGTTTGTCATTTCCATTGTCATCGGCTTCTTCAAACGAAGCGTACCCCTTTTCATCCAAAGGCTTCTCCTTTCAGCCTACCATGAGTTCTCCAGACGATTCTTTCATGACCCCGTCATGACCTTACTAGTTGAGGAATACCATGGCTTTTGTGACAATGAAATTTACCATGCTGTGGAGCACTACTTGCATAGCAAAATCAGCCCAAATACTCGACTCCTTAAAATAGCGCAAACCTGGCGAGACACTAGTTCCTCCTACCAATTTGTTGACAGGCAAGAGTTTGAAGACGTGTATGAGGGCATTGAGCTGAAATGGAAGTTCAGTTCCACTTCAAATCAGCAAAGCTTCCAGCTTATGTTTGACGTAAGGCACAAGGAAGCAGTGGGGTGTTCTTACATTCCTTATGTTTTGAAGAGGTTTAAGGCCATGAAAGAGGAAACAAAGATTGTCAGGCTGTGCACACTTGCGAGGAAAAATGGGCATAACATCAAGTGGCAATCAATAACATTCGGAAACTACTCTGCCACATTTGCTACTCTAGCCTTGGATCCCAAGCTGAAGACATCGATATTAGAGGATTTGGACCGGTTTGTGAAGGGCAAAGAGTTCTACCAAGGTGTAGGAAGGGCTTGGAAGAGAGGCTATCTTCTATATGGTCCCCCCGGCACTGGTAAGTCCTCCCTGATAGCTGCAATTGCTAATCATCTCAAGTTCAACATCTATGACTTGCAGCTCTCACATTTGAAATCCGATGTGGAACTGAGAAGTGTACTAGTTGCAACCACAAACCAATCCATACTTGTGATTGAGGATATAGATTGCGGTCTGAAGCTACAAGATAGAACCCTTGTTAAGACAACCAGCAGTTCGAAAGAGAAAGACCAAGCAGATGAGCCGGTGATTACACTTTCTGGCCTACTGAACTTCATAGATGGCCTATGGTCTGGTTCAGCAGAGCAAAGGATAATCATATTCACTACCAATCACAAGGACAAGCTTGACCCCGCATTGCTGCGTCCCGGACGAATGGATATGCATATCCACATGTCATATTGCACCTTTGGTGGGTTCGAAACCTTGGCGCGCAATTACTTGGGGATCAAAGAACACCAGCCTTTGTTTGATGAGATTGAAAGCCTGCTGCAAAATGCAGAGATCACTCCTGCACAAGTAGCGCAAGAGCTGATGAAGAGTGACGATGCTGAAACTGCACTCCAAGGTCTGATCACAATGCTGAAGGAGAAGATCGAACATCAAAAGGCTGGAGATCAAATCAAAATGAGAGAAGATGAACACAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

480

Amino Acids

55.12

Weight (kDa)

7.68

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 61 - 154 1.5e-16 Domain associated at C-terminal with AAA
AAA PF00004 261 - 396 7.6e-21 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 398 - 466 9e-23 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019425)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0020261
rosa_laevigata RLG00000032513
rosa_multiflora Rmu_sc0002087.1_g000008
rosa_roxburghii Rroxscaffold_1G00057950
rosa_rugosa Rorug05G0058000
rosa_samantha Rh5AG148500 Rh5CG159400
rosa_wichuraiana Rw5G013140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 310
AccII CGCG 1 cut(s) 1222
AciI CCGC 2 cut(s) 960, 1143
AclWI GGATC 4 cut(s) 112, 680, 693, 1244
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 3 cut(s) 716, 986, 1394
AfaI GTAC 2 cut(s) 180, 909
AfiI CCNNNNNNNGG 4 cut(s) 135, 310, 806, 1203
AflIII ACRYGT 2 cut(s) 426, 1182
AgeI ACCGGT 1 cut(s) 723
AgsI TTSAA 7 cut(s) 169, 422, 471, 550, 853, 883, 1271
AhlI ACTAGT 3 cut(s) 262, 383, 910
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 371
AloI GAACNNNNNNTCC 2 cut(s) 445, 477
Alw21I GWGCWC 2 cut(s) 318, 599
Alw26I GTCTC 1 cut(s) 372
Alw44I GTGCAC 1 cut(s) 595
AlwI GGATC 4 cut(s) 112, 680, 693, 1244
AoxI GGCC 3 cut(s) 561, 1051, 1072
ApaLI GTGCAC 1 cut(s) 595
ApeKI GCWGC 5 cut(s) 50, 827, 868, 1150, 1279
ApoI RAATTY 1 cut(s) 297
AsiGI ACCGGT 1 cut(s) 723
AspLEI GCGC 4 cut(s) 367, 1222, 1224, 1315
AspS9I GGNCC 2 cut(s) 721, 794
AsuC2I CCSGG 2 cut(s) 801, 1158
AsuHPI GGTGA 1 cut(s) 1048
AsuII TTCGAA 2 cut(s) 1007, 1209
AsuNHI GCTAGC 1 cut(s) 46
AvaII GGWCC 2 cut(s) 721, 794
BaeGI GKGCMC 1 cut(s) 599
BamHI GGATCC 1 cut(s) 685
BbsI GAAGAC 2 cut(s) 429, 704
Bbv12I GWGCWC 2 cut(s) 318, 599
BbvI GCAGC 5 cut(s) 62, 814, 880, 1137, 1266
BccI CCATC 1 cut(s) 1064
BciT130I CCWGG 1 cut(s) 373
BclI TGATCA 1 cut(s) 1362
BcnI CCSGG 2 cut(s) 801, 1158
BcoDI GTCTC 1 cut(s) 372
BcuI ACTAGT 3 cut(s) 262, 383, 910
BfaI CTAG 6 cut(s) 47, 263, 384, 677, 911, 1441
BisI GCNGC 5 cut(s) 51, 828, 869, 1151, 1280
BlsI GCNGC 5 cut(s) 52, 829, 870, 1152, 1281
Bme1390I CCNGG 3 cut(s) 373, 801, 1158
Bme18I GGWCC 2 cut(s) 721, 794
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 721, 794
BmiI GGNNCC 2 cut(s) 687, 796
BmrFI CCNGG 3 cut(s) 373, 801, 1158
BmsI GCATC 4 cut(s) 13, 68, 69, 1327
BmtI GCTAGC 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 429, 704
BpmI CTGGAG 3 cut(s) 116, 211, 1422
Bpu14I TTCGAA 2 cut(s) 1007, 1209
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 2 cut(s) 801, 1158
Bsa29I ATCGAT 1 cut(s) 704
BsaJI CCNNGG 6 cut(s) 277, 681, 751, 799, 1215, 1354
BsaWI WCCGGW 1 cut(s) 723
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 310, 806, 1203
Bse118I RCCGGY 2 cut(s) 723, 1033
Bse1I ACTGG 1 cut(s) 811
Bse3DI GCAATG 1 cut(s) 1145
BseBI CCWGG 1 cut(s) 373
BseCI ATCGAT 1 cut(s) 704
BseDI CCNNGG 6 cut(s) 277, 681, 751, 799, 1215, 1354
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 4 cut(s) 135, 310, 806, 1203
BseMI GCAATG 1 cut(s) 1145
BseMII CTCAG 1 cut(s) 890
BseNI ACTGG 1 cut(s) 811
BsePI GCGCGC 1 cut(s) 1220
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 5 cut(s) 62, 814, 880, 1137, 1266
BsgI GTGCAG 2 cut(s) 1287, 1332
Bsh1236I CGCG 1 cut(s) 1222
BshFI GGCC 3 cut(s) 563, 1053, 1074
BshTI ACCGGT 1 cut(s) 723
BshVI ATCGAT 1 cut(s) 704
BsiHKAI GWGCWC 2 cut(s) 318, 599
BsiSI CCGG 4 cut(s) 724, 801, 1034, 1158
BslFI GGGAC 3 cut(s) 8, 780, 1140
BslI CCNNNNNNNGG 4 cut(s) 135, 310, 806, 1203
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 3 cut(s) 8, 780, 1140
BsnI GGCC 3 cut(s) 563, 1053, 1074
Bsp119I TTCGAA 2 cut(s) 1007, 1209
Bsp1286I GDGCHC 2 cut(s) 318, 599
Bsp143I GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 2 cut(s) 960, 1143
BspANI GGCC 3 cut(s) 563, 1053, 1074
BspCNI CTCAG 1 cut(s) 891
BspDI ATCGAT 1 cut(s) 704
BspFNI CGCG 1 cut(s) 1222
BspHI TCATGA 2 cut(s) 241, 252
BspLI GGNNCC 2 cut(s) 687, 796
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 4 cut(s) 112, 680, 693, 1244
BspT104I TTCGAA 2 cut(s) 1007, 1209
BsrDI GCAATG 1 cut(s) 1145
BsrFI RCCGGY 2 cut(s) 723, 1033
BsrI ACTGG 1 cut(s) 811
BssAI RCCGGY 2 cut(s) 723, 1033
BssECI CCNNGG 6 cut(s) 277, 681, 751, 799, 1215, 1354
BssHII GCGCGC 1 cut(s) 1220
BssMI GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
BssT1I CCWWGG 5 cut(s) 277, 681, 751, 1215, 1354
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 1436
Bst6I CTCTTC 3 cut(s) 545, 767, 1322
BstAPI GCANNNNNTGC 2 cut(s) 56, 322
BstBI TTCGAA 2 cut(s) 1007, 1209
BstC8I GCNNGC 3 cut(s) 48, 1222, 1277
BstDEI CTNAG 1 cut(s) 899
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 1 cut(s) 1222
BstHHI GCGC 4 cut(s) 367, 1222, 1224, 1315
BstKTI GATC 7 cut(s) 120, 688, 1239, 1296, 1365, 1386, 1408
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
BstMWI GCNNNNNNNGC 9 cut(s) 56, 322, 336, 373, 668, 677, 833, 1310, 1346
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 1186
BstSCI CCNGG 3 cut(s) 371, 799, 1156
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 1222
BstV1I GCAGC 5 cut(s) 62, 814, 880, 1137, 1266
BstV2I GAAGAC 2 cut(s) 429, 704
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
Bsu15I ATCGAT 1 cut(s) 704
BsuRI GGCC 3 cut(s) 563, 1053, 1074
BsuTUI ATCGAT 1 cut(s) 704
BtgI CCRYGG 1 cut(s) 277
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 3 cut(s) 525, 804, 1441
Cac8I GCNNGC 3 cut(s) 48, 1222, 1277
CciI TCATGA 2 cut(s) 241, 252
CfoI GCGC 4 cut(s) 367, 1222, 1224, 1315
Cfr10I RCCGGY 2 cut(s) 723, 1033
Cfr13I GGNCC 2 cut(s) 721, 794
ClaI ATCGAT 1 cut(s) 704
CseI GACGC 1 cut(s) 1142
Csp6I GTAC 2 cut(s) 179, 908
CspAI ACCGGT 1 cut(s) 723
CviAII CATG 7 cut(s) 218, 242, 253, 278, 305, 565, 1183
CviQI GTAC 2 cut(s) 179, 908
DdeI CTNAG 1 cut(s) 899
DpnI GATC 7 cut(s) 119, 687, 1238, 1295, 1364, 1385, 1407
DpnII GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
Eam1104I CTCTTC 3 cut(s) 545, 767, 1322
EarI CTCTTC 3 cut(s) 545, 767, 1322
Eco130I CCWWGG 5 cut(s) 277, 681, 751, 1215, 1354
Eco47I GGWCC 2 cut(s) 721, 794
Eco57I CTGAAG 3 cut(s) 716, 986, 1394
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 5 cut(s) 277, 681, 751, 1215, 1354
EcoT22I ATGCAT 2 cut(s) 6, 1176
ErhI CCWWGG 5 cut(s) 277, 681, 751, 1215, 1354
FaeI CATG 7 cut(s) 221, 245, 256, 281, 308, 568, 1186
FaqI GGGAC 3 cut(s) 8, 780, 1140
FatI CATG 7 cut(s) 217, 241, 252, 277, 304, 564, 1182
FauI CCCGC 1 cut(s) 1150
FbaI TGATCA 1 cut(s) 1362
Fnu4HI GCNGC 5 cut(s) 51, 828, 869, 1151, 1280
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 5 cut(s) 51, 828, 869, 1151, 1280
FspBI CTAG 6 cut(s) 47, 263, 384, 677, 911, 1441
GlaI GCGC 4 cut(s) 366, 1221, 1223, 1314
GluI GCNGC 5 cut(s) 51, 828, 869, 1151, 1280
GsuI CTGGAG 3 cut(s) 116, 211, 1422
HaeIII GGCC 3 cut(s) 563, 1053, 1074
HapII CCGG 4 cut(s) 724, 801, 1034, 1158
HgaI GACGC 1 cut(s) 1142
HhaI GCGC 4 cut(s) 367, 1222, 1224, 1315
Hin1II CATG 7 cut(s) 221, 245, 256, 281, 308, 568, 1186
Hin6I GCGC 4 cut(s) 365, 1220, 1222, 1313
HinP1I GCGC 4 cut(s) 365, 1220, 1222, 1313
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 2 cut(s) 481, 1133
HinfI GANTC 2 cut(s) 234, 351
HpaII CCGG 4 cut(s) 724, 801, 1034, 1158
HphI GGTGA 1 cut(s) 1048
Hpy166II GTNNAC 3 cut(s) 406, 597, 908
Hpy188I TCNGA 5 cut(s) 15, 650, 889, 966, 1362
Hpy188III TCNNGA 4 cut(s) 133, 228, 242, 253
Hpy8I GTNNAC 3 cut(s) 406, 597, 908
HpyAV CCTTC 3 cut(s) 727, 756, 1369
HpyCH4III ACNGT 1 cut(s) 1436
HpyCH4IV ACGT 2 cut(s) 426, 501
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 322, 336, 373, 668, 677, 833, 1310, 1346
HpyF3I CTNAG 1 cut(s) 899
HpySE526I ACGT 2 cut(s) 426, 501
Hsp92II CATG 7 cut(s) 221, 245, 256, 281, 308, 568, 1186
HspAI GCGC 4 cut(s) 365, 1220, 1222, 1313
Ksp22I TGATCA 1 cut(s) 1362
Kzo9I GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 5 cut(s) 62, 814, 880, 1137, 1266
LweI GCATC 4 cut(s) 13, 68, 69, 1327
MaeI CTAG 6 cut(s) 47, 263, 384, 677, 911, 1441
MaeII ACGT 2 cut(s) 426, 501
MaeIII GTNAC 3 cut(s) 287, 1331, 1436
MalI GATC 7 cut(s) 119, 687, 1238, 1295, 1364, 1385, 1407
MboI GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
MboII GAAGA 9 cut(s) 157, 434, 562, 709, 776, 784, 1339, 1393, 1436
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 318, 599
MluCI AATT 5 cut(s) 103, 297, 398, 831, 1225
MlyI GAGTC 1 cut(s) 345
Mph1103I ATGCAT 2 cut(s) 6, 1176
MseI TTAA 3 cut(s) 357, 558, 990
MslI CAYNNNNRTG 2 cut(s) 40, 938
MspI CCGG 4 cut(s) 724, 801, 1034, 1158
MspR9I CCNGG 3 cut(s) 373, 801, 1158
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 1 cut(s) 1222
MwoI GCNNNNNNNGC 9 cut(s) 56, 322, 336, 373, 668, 677, 833, 1310, 1346
NciI CCSGG 2 cut(s) 801, 1158
NcoI CCATGG 1 cut(s) 277
NdeII GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 7 cut(s) 221, 245, 256, 281, 308, 568, 1186
NlaIV GGNNCC 2 cut(s) 687, 796
NmuCI GTSAC 3 cut(s) 287, 1331, 1436
NsiI ATGCAT 2 cut(s) 6, 1176
NspI RCATGY 1 cut(s) 1186
NspV TTCGAA 2 cut(s) 1007, 1209
PagI TCATGA 2 cut(s) 241, 252
PauI GCGCGC 1 cut(s) 1220
PciI ACATGT 1 cut(s) 1182
PfeI GAWTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 1156
PinAI ACCGGT 1 cut(s) 723
PkrI GCNGC 5 cut(s) 52, 829, 870, 1152, 1281
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PscI ACATGT 1 cut(s) 1182
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 687, 796
PspPI GGNCC 2 cut(s) 721, 794
PsuI RGATCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 248
PteI GCGCGC 1 cut(s) 1220
RsaI GTAC 2 cut(s) 180, 909
RsaNI GTAC 2 cut(s) 179, 908
RseI CAYNNNNRTG 2 cut(s) 40, 938
SaqAI TTAA 3 cut(s) 357, 558, 990
SatI GCNGC 5 cut(s) 51, 828, 869, 1151, 1280
Sau3AI GATC 7 cut(s) 117, 685, 1236, 1293, 1362, 1383, 1405
Sau96I GGNCC 2 cut(s) 721, 794
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 3 cut(s) 373, 801, 1158
SduI GDGCHC 2 cut(s) 318, 599
SfaNI GCATC 4 cut(s) 13, 68, 69, 1327
SfuI TTCGAA 2 cut(s) 1007, 1209
SinI GGWCC 2 cut(s) 721, 794
SmiMI CAYNNNNRTG 2 cut(s) 40, 938
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SpeI ACTAGT 3 cut(s) 262, 383, 910
Sse9I AATT 5 cut(s) 103, 297, 398, 831, 1225
SsiI CCGC 2 cut(s) 960, 1143
SspMI CTAG 6 cut(s) 47, 263, 384, 677, 911, 1441
StyD4I CCNGG 3 cut(s) 371, 799, 1156
StyI CCWWGG 5 cut(s) 277, 681, 751, 1215, 1354
TaaI ACNGT 1 cut(s) 1436
TaiI ACGT 2 cut(s) 429, 504
TaqI TCGA 5 cut(s) 349, 704, 1007, 1209, 1386
TasI AATT 5 cut(s) 103, 297, 398, 831, 1225
TatI WGTACW 1 cut(s) 907
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 3 cut(s) 357, 558, 990
Tru9I TTAA 3 cut(s) 357, 558, 990
TscAI CASTG 3 cut(s) 525, 811, 1441
TseFI GTSAC 3 cut(s) 287, 1331, 1436
TseI GCWGC 5 cut(s) 50, 827, 868, 1150, 1279
Tsp45I GTSAC 3 cut(s) 287, 1331, 1436
TspDTI ATGAA 7 cut(s) 178, 230, 309, 581, 1054, 1340, 1443
TspRI CASTG 3 cut(s) 525, 811, 1441
Tth111I GACNNNGTC 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 310
VneI GTGCAC 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 721, 794
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 1186
XspI CTAG 6 cut(s) 47, 263, 384, 677, 911, 1441
Zsp2I ATGCAT 2 cut(s) 6, 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.