Rorug05G0058000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0019425
Physical Location & Seq
Reverse (-)
5068038 .. 5068758
721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0058000.1

Sequence Viewer

Length: 423 bp
ATGGCTCGCAGGACACTTTGCTCCAAAAGCAGTCCTGTCCAGGATCCCATGCTTCTTGAAGTGGTCGACGACAACTGGTTCAGTGGACGCAGAGAGAACAACAAGATATCTGTGGAGATGAATCAGAATGGTGTATCAAAAGGAAGTTCTAGCTCAATTGAAAACACTTATGAAAGTCGCATTATACAAAGCCTTGATAAAATCTCCACCAGTTTTGAACGACTCTATAATCTACTAGAGAAAAGAGAAAGGGAGAGACAATATACAGTTTGGGATGCTATCAAGGAGATCCCAAACTTGGATCAAGGTACTCGTTTCACGGCGCTTGATTTGATTGATACCAAAACAAAAAAAGATGCGTTCTTGAAGATGTCCCCTGAAGAACGATTAAATTGGATATTCTACAAGATGCAAGGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

140

Amino Acids

16.38

Weight (kDa)

7.78

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 90 - 136 9.3e-27 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019425)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0020261
rosa_laevigata RLG00000032513
rosa_multiflora Rmu_sc0002087.1_g000008
rosa_roxburghii Rroxscaffold_1G00057950
rosa_rugosa Rorug05G0058000
rosa_samantha Rh5AG148500 Rh5CG159400
rosa_wichuraiana Rw5G013140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AclWI GGATC 4 cut(s) 38, 51, 283, 309
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 4 cut(s) 59, 161, 218, 367
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 4 cut(s) 38, 51, 283, 309
AspLEI GCGC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 2 cut(s) 150, 236
BfoI RGCGCY 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 3 cut(s) 265, 346, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 80, 210
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 80, 210
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 358
Bsp143I GATC 3 cut(s) 43, 288, 301
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 4 cut(s) 38, 51, 283, 309
BsrI ACTGG 2 cut(s) 80, 210
BssMI GATC 3 cut(s) 43, 288, 301
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 46, 291, 304
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 43, 288, 301
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 43, 288
BstYI RGATCY 2 cut(s) 43, 288
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 325
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 1 cut(s) 49
CviJI RGCY 3 cut(s) 5, 153, 192
CviKI_1 RGCY 3 cut(s) 5, 153, 192
CviQI GTAC 1 cut(s) 309
DpnI GATC 3 cut(s) 45, 290, 303
DpnII GATC 3 cut(s) 43, 288, 301
Eco32I GATATC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 108
FaeI CATG 1 cut(s) 52
FaiI YATR 6 cut(s) 50, 171, 185, 228, 264, 421
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 48
FblI GTMKAC 1 cut(s) 66
FokI GGATG 1 cut(s) 287
FspBI CTAG 2 cut(s) 150, 236
GlaI GCGC 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 326
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 325
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 121, 222
Hpy166II GTNNAC 2 cut(s) 67, 86
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 56, 364
Hpy8I GTNNAC 2 cut(s) 67, 86
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 3 cut(s) 43, 288, 301
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 26, 48, 53, 61, 223, 390
LweI GCATC 3 cut(s) 265, 346, 399
MaeI CTAG 2 cut(s) 150, 236
MalI GATC 3 cut(s) 45, 290, 303
MboI GATC 3 cut(s) 43, 288, 301
MboII GAAGA 2 cut(s) 379, 392
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 2 cut(s) 43, 288
MluCI AATT 2 cut(s) 156, 391
MlyI GAGTC 1 cut(s) 216
MseI TTAA 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 41
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 3 cut(s) 43, 288, 301
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 39
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 45
PsuI RGATCY 2 cut(s) 43, 288
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 3 cut(s) 43, 288, 301
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 41
SetI ASST 2 cut(s) 155, 310
SfaNI GCATC 3 cut(s) 265, 346, 399
Sse9I AATT 2 cut(s) 156, 391
SspMI CTAG 2 cut(s) 150, 236
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 156, 391
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 134, 186
TspRI CASTG 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 2 cut(s) 150, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.