Rroxscaffold_2G00085200

expansin-A23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019883
Physical Location & Seq
Forward (+)
7545547 .. 7546567
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085200.1

Sequence Viewer

Length: 330 bp
ATGCATGCCATTGCCGAGAACCTCCTTGTTGGTGAAAAAGATGGCGTTGCTTGGGGTCCATCCACGTTTTATGGAGACATGAGTGGCAGAGAAACCTTGAATCCAAAGTTTAATCCGTGGTGCAACCCCCCAAGAAAGCATTTTGACTTGTCCATGCCTATGTTCACAAAACTTGCTCCATACAAAGCTGGTATAATTCCGGTTAAGTTTCGCAGAGTCCCTTGTGTTAAAAGTGGTGGGATTAAGTTTGAGATCAAGGGAAATCCCAATTGGATTACTGCAACTCCTTTCAATGTCGGCGGTGCAGGGTGTTTCGGCCCTTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

109

Amino Acids

11.94

Weight (kDa)

9.39

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 41 - 70 3.1e-07 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019883)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0166101
rosa_laevigata RLG00000021585
rosa_multiflora Rmu_sc0006218.1_g000026
rosa_roxburghii Rroxscaffold_2G00085200
rosa_samantha Rh2AG586300 Rh2BG598100 Rh2CG568800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AgsI TTSAA 2 cut(s) 100, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 253, 285
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 1 cut(s) 316
AspS9I GGNCC 2 cut(s) 56, 317
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 56
BccI CCATC 2 cut(s) 35, 67
BcoDI GTCTC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 56, 317
BmiI GGNNCC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bse3DI GCAATG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 56, 317
CviAII CATG 3 cut(s) 5, 79, 154
CviJI RGCY 2 cut(s) 188, 318
CviKI_1 RGCY 2 cut(s) 188, 318
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 82, 157
FaiI YATR 7 cut(s) 6, 72, 80, 155, 161, 181, 194
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 4, 78, 153
FokI GGATG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 200
Hin1II CATG 3 cut(s) 8, 82, 157
HinfI GANTC 2 cut(s) 100, 216
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 5 cut(s) 4, 123, 281, 305, 324
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 3 cut(s) 8, 82, 157
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 3 cut(s) 174, 213, 291
MaeII ACGT 1 cut(s) 65
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MfeI CAATTG 1 cut(s) 268
MluCI AATT 3 cut(s) 195, 268, 325
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 111, 204, 228, 243, 328
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 268
NdeII GATC 1 cut(s) 252
NlaIII CATG 3 cut(s) 8, 82, 157
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 100
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 56, 317
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 5 cut(s) 111, 204, 228, 243, 328
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 56, 317
SchI GAGTC 1 cut(s) 225
SetI ASST 4 cut(s) 24, 68, 98, 190
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 158
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 195, 268, 325
SsiI CCGC 1 cut(s) 300
TaiI ACGT 1 cut(s) 68
TasI AATT 3 cut(s) 195, 268, 325
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 5 cut(s) 111, 204, 228, 243, 328
Tru9I TTAA 5 cut(s) 111, 204, 228, 243, 328
TspGWI ACGGA 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 56
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.