Rh2AG586300

expansin-A23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019883
Physical Location & Seq
Reverse (-)
81860674 .. 81861023
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG586300.1

Sequence Viewer

Length: 252 bp
ATGCCTATGTTCACAAAACTTGCTCCATACAAAGCTGGTATAATTCCGGTTAAGTTTCGCAGAGTCCCTTGTGTTAAAAGGGGTGGGATTAAGTTTGAGATCAAGGGAAATCCCAACTGGATTACTGCAACTGCTTTCAATGTCGGCGGTGCAGGTGATGTTTCGGCCCTTGCAATCAAGGGTTCTAACTCCGTCGATTGGGTACCAATGACTGCAACTGGGGACAAGTTTGGCAGACCGCGGCCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

83

Amino Acids

8.91

Weight (kDa)

10.51

Isoelectric Point (pI)

20.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Expansin_C PF01357 30 - 72 1.5e-09 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019883)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0166101
rosa_laevigata RLG00000021585
rosa_multiflora Rmu_sc0006218.1_g000026
rosa_roxburghii Rroxscaffold_2G00085200
rosa_samantha Rh2AG586300 Rh2BG598100 Rh2CG568800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
Acc65I GGTACC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 202
AccII CGCG 1 cut(s) 241
AciI CCGC 3 cut(s) 147, 239, 241
AcoI YGGCCR 1 cut(s) 242
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AoxI GGCC 2 cut(s) 165, 242
Asp718I GGTACC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 122, 223
BseDI CCNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 122, 223
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 2 cut(s) 167, 244
BshNI GGYRCC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 50, 236
BslI CCNNNNNNNGG 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 50, 236
BsnI GGCC 2 cut(s) 167, 244
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 3 cut(s) 147, 239, 241
BspANI GGCC 2 cut(s) 167, 244
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 202
BsrI ACTGG 2 cut(s) 122, 223
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 241
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstUI CGCG 1 cut(s) 241
BsuRI GGCC 2 cut(s) 167, 244
BtgI CCRYGG 1 cut(s) 239
BveI ACCTGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 166
Cfr42I CCGCGG 1 cut(s) 242
Csp6I GTAC 1 cut(s) 203
CviJI RGCY 3 cut(s) 35, 167, 244
CviKI_1 RGCY 3 cut(s) 35, 167, 244
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 242
FaiI YATR 3 cut(s) 8, 28, 41
FaqI GGGAC 2 cut(s) 50, 236
Fnu4HI GCNGC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
HaeIII GGCC 2 cut(s) 167, 244
HapII CCGG 1 cut(s) 47
HinfI GANTC 1 cut(s) 63
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 197
HpyCH4V TGCA 4 cut(s) 128, 152, 173, 215
HpyF3I CTNAG 1 cut(s) 249
KpnI GGTACC 1 cut(s) 206
KspI CCGCGG 1 cut(s) 242
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 21, 60, 103, 138, 204
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MluCI AATT 1 cut(s) 42
MlyI GAGTC 1 cut(s) 72
MseI TTAA 3 cut(s) 51, 75, 90
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 241
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 243
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SacII CCGCGG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 51, 75, 90
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 72
SetI ASST 2 cut(s) 37, 157
Sfr303I CCGCGG 1 cut(s) 242
SgrBI CCGCGG 1 cut(s) 242
Sse9I AATT 1 cut(s) 42
SsiI CCGC 3 cut(s) 147, 239, 241
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 42
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 51, 75, 90
Tru9I TTAA 3 cut(s) 51, 75, 90
TspGWI ACGGA 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.