Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019883

Physical Location & Seq

Genomic Coordinates Reverse (-)

81965180 .. 81965532

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG598100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCCTATGTTCACCAAACTTGCTCCATACAAAGCTGGTATAACTCCGGTTAAGTTTCGCAGAGTCCCTTGTGTTAAAAGTGGTGGGATTAAGTTTGAGATCAAGGGAAATCCCAATTGGATTACTGCAACTCCTTTCAATGTCGGCGGTGCAGGTGATGTTTCGGCCCTTGCAATTAAGGGTTCTAACTCCGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

66

Amino Acids

6.95

Weight (kDa)

10.01

Isoelectric Point (pI)

20.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Expansin_C	PF01357	30 - 61	2.5e-06	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019883)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0166101
rosa_laevigata	RLG00000021585
rosa_multiflora	Rmu_sc0006218.1_g000026
rosa_roxburghii	Rroxscaffold_2G00085200
rosa_samantha	Rh2AG586300 Rh2BG598100 Rh2CG568800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AciI	CCGC	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AoxI	GGCC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	4, 167
BfuAI	ACCTGC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	143
BssMI	GATC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	166
CviJI	RGCY	2 cut(s)	35, 167
CviKI_1	RGCY	2 cut(s)	35, 167
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
FaiI	YATR	3 cut(s)	8, 28, 41
FaqI	GGGAC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	47
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	4, 167
Hpy166II	GTNNAC	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	128, 152, 173
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	21, 60, 138
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MfeI	CAATTG	1 cut(s)	115
MluCI	AATT	2 cut(s)	115, 174
MlyI	GAGTC	1 cut(s)	72
MseI	TTAA	4 cut(s)	51, 75, 90, 177
MspI	CCGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	115
NdeII	GATC	1 cut(s)	99
PaqCI	CACCTGC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	51, 75, 90, 177
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	72
SetI	ASST	2 cut(s)	37, 157
SgeI	CNNG	7 cut(s)	32, 48, 59, 81, 115, 165, 182
Sse9I	AATT	2 cut(s)	115, 174
SsiI	CCGC	1 cut(s)	147
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	115, 174
Tru1I	TTAA	4 cut(s)	51, 75, 90, 177
Tru9I	TTAA	4 cut(s)	51, 75, 90, 177
TspGWI	ACGGA	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.