Rroxscaffold_2G00099200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0020724
Physical Location & Seq
Reverse (-)
20765197 .. 20766395
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099200.1

Sequence Viewer

Length: 288 bp
ATGTTGTTGCCCCATCTTCTCGCCTCTGGTCGCCTCGCCGGCGTGCTCTACATTCTCCGCGGCATGGCTTGCTTCCATCAATGCACCTGCAGAACGATGCACAACGACAATCTCCGCCACTCCCACAGATTGGAGCGCAAAGACTTGCATCGCCATAAATCGGATCCGGGTCCAGAGGTTGCGCGTCTGCCAATTATTAGCCTGCCTTACCGCCATCACCAGCCAAACAGTGCTGCTCACCTCTTGGCTTCGAAGCTTCATGCTCCAATCATCCCTGACTGCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.77

Weight (kDa)

9.69

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020724)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8212208.1_g000001 Rmu_sc0000570.1_g000023
rosa_roxburghii Rroxscaffold_2G00099200
rosa_samantha Rh2AG233600 Rh2AG439200 Rh4DG071100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 130
AccII CGCG 2 cut(s) 60, 184
AciI CCGC 4 cut(s) 58, 60, 115, 211
AclWI GGATC 2 cut(s) 158, 171
AfiI CCNNNNNNNGG 3 cut(s) 64, 130, 160
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw21I GWGCWC 1 cut(s) 48
AlwI GGATC 2 cut(s) 158, 171
ApeKI GCWGC 1 cut(s) 233
AspLEI GCGC 2 cut(s) 138, 184
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 209, 230
AsuII TTCGAA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 170
BamHI GGATCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 21, 84, 222
BcnI CCSGG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 39
BisI GCNGC 2 cut(s) 61, 234
BlsI GCNGC 2 cut(s) 62, 235
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 165, 171
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 87, 157
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 130, 160
Bse118I RCCGGY 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 3 cut(s) 64, 130, 160
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 2 cut(s) 60, 184
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 39, 167
BslI CCNNNNNNNGG 3 cut(s) 64, 130, 160
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 4 cut(s) 58, 60, 115, 211
BspFNI CGCG 2 cut(s) 60, 184
BspLI GGNNCC 2 cut(s) 165, 171
BspMAI CTGCAG 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 2 cut(s) 158, 171
BspT104I TTCGAA 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 4 cut(s) 40, 44, 70, 203
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 270
BstFNI CGCG 2 cut(s) 60, 184
BstHHI GCGC 2 cut(s) 138, 184
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 39, 69
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 88
BstUI CGCG 2 cut(s) 60, 184
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 58
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 235
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 40, 44, 70, 203
CfoI GCGC 2 cut(s) 138, 184
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 170
Cfr42I CCGCGG 1 cut(s) 61
CseI GACGC 1 cut(s) 173
CviAII CATG 2 cut(s) 64, 260
CviJI RGCY 5 cut(s) 68, 201, 223, 248, 256
CviKI_1 RGCY 5 cut(s) 68, 201, 223, 248, 256
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 170
FaeI CATG 2 cut(s) 67, 263
FaiI YATR 4 cut(s) 65, 156, 261, 286
FatI CATG 2 cut(s) 63, 259
Fnu4HI GCNGC 2 cut(s) 61, 234
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 61, 234
GlaI GCGC 2 cut(s) 137, 183
GluI GCNGC 2 cut(s) 61, 234
HapII CCGG 2 cut(s) 39, 167
HgaI GACGC 1 cut(s) 173
HhaI GCGC 2 cut(s) 138, 184
Hin1II CATG 2 cut(s) 67, 263
Hin6I GCGC 2 cut(s) 136, 182
HinP1I GCGC 2 cut(s) 136, 182
HindIII AAGCTT 1 cut(s) 254
HpaII CCGG 2 cut(s) 39, 167
HphI GGTGA 2 cut(s) 209, 230
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 84, 90, 100, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 69
Hsp92II CATG 2 cut(s) 67, 263
HspAI GCGC 2 cut(s) 136, 182
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
KspI CCGCGG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 133, 268
LpnPI CCDG 7 cut(s) 12, 52, 100, 180, 186, 215, 233
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 87, 157
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 8
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 192
MnlI CCTC 4 cut(s) 34, 44, 169, 251
MreI CGCCGGCG 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 2 cut(s) 39, 167
MspR9I CCNGG 1 cut(s) 168
MvnI CGCG 2 cut(s) 60, 184
MwoI GCNNNNNNNGC 2 cut(s) 39, 69
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 168
NdeII GATC 1 cut(s) 163
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 2 cut(s) 67, 263
NlaIV GGNNCC 2 cut(s) 165, 171
NspV TTCGAA 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 62, 235
PspN4I GGNNCC 2 cut(s) 165, 171
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 163
SacII CCGCGG 1 cut(s) 61
SatI GCNGC 2 cut(s) 61, 234
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 89, 180, 243, 258
SfaNI GCATC 2 cut(s) 87, 157
SfcI CTRYAG 1 cut(s) 88
Sfr303I CCGCGG 1 cut(s) 61
SfuI TTCGAA 1 cut(s) 251
SgrAI CRCCGGYG 1 cut(s) 38
SgrBI CCGCGG 1 cut(s) 61
SinI GGWCC 1 cut(s) 170
Sse9I AATT 1 cut(s) 192
SsiI CCGC 4 cut(s) 58, 60, 115, 211
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 251
TasI AATT 1 cut(s) 192
TauI GCSGC 1 cut(s) 63
TscAI CASTG 1 cut(s) 235
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.