Rh2AG439200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0020724
Physical Location & Seq
Reverse (-)
65003432 .. 65003749
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG439200.1

Sequence Viewer

Length: 318 bp
ATGGTGCACGACGACAATCTCCACCACTTCCAAAAGTTGGAGTGCAAAGGCCGGCGCCGCCATCAATCAGAGTTTGGCCGTTTTGATCCGGGTCCAGAGGTCGCACGTCCGCCACACAGGACCTCTCATCGGTTGGCTTCCAGACTATATGCGTTGGTCTTTCCCGACGGCGAACCACCTAGACTTGAGCCGGCCTCGCCTCGGCCTGATCCGACACGGCCATTCTTCCACCCAATCCCCATTGAGTCTGATTGGACCGGAGCACCGATCCATAACCCTCACATCACCTATTTCCTTCCGGCAAGAGATGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

6.75

Isoelectric Point (pI)

71.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020724)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8212208.1_g000001 Rmu_sc0000570.1_g000023
rosa_roxburghii Rroxscaffold_2G00099200
rosa_samantha Rh2AG233600 Rh2AG439200 Rh4DG071100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 37
AciI CCGC 2 cut(s) 58, 110
AclWI GGATC 3 cut(s) 80, 203, 262
AcoI YGGCCR 2 cut(s) 76, 218
AcyI GRCGYC 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 37, 129, 201
AjiI CACGTC 1 cut(s) 107
Alw21I GWGCWC 2 cut(s) 9, 265
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 3 cut(s) 80, 203, 262
AoxI GGCC 5 cut(s) 49, 76, 192, 203, 218
ApaLI GTGCAC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 3 cut(s) 92, 120, 255
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 3 cut(s) 92, 120, 255
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 9, 265
BccI CCATC 1 cut(s) 69
BceAI ACGGC 3 cut(s) 63, 184, 233
BcnI CCSGG 1 cut(s) 90
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 3 cut(s) 92, 120, 255
BmgBI CACGTC 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 92, 120, 255
BmiI GGNNCC 2 cut(s) 56, 93
BmrFI CCNGG 1 cut(s) 90
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 129, 201
Bse118I RCCGGY 2 cut(s) 51, 190
BseDI CCNNGG 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 37, 129, 201
BseSI GKGCMC 1 cut(s) 9
BshFI GGCC 5 cut(s) 51, 78, 194, 205, 220
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 9, 265
BsiSI CCGG 5 cut(s) 52, 89, 191, 258, 299
BslI CCNNNNNNNGG 3 cut(s) 37, 129, 201
BsnI GGCC 5 cut(s) 51, 78, 194, 205, 220
Bsp1286I GDGCHC 2 cut(s) 9, 265
Bsp143I GATC 3 cut(s) 85, 208, 267
BspACI CCGC 2 cut(s) 58, 110
BspANI GGCC 5 cut(s) 51, 78, 194, 205, 220
BspLI GGNNCC 2 cut(s) 56, 93
BspPI GGATC 3 cut(s) 80, 203, 262
BspT107I GGYRCC 1 cut(s) 54
BsrFI RCCGGY 2 cut(s) 51, 190
BssAI RCCGGY 2 cut(s) 51, 190
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 85, 208, 267
BssNI GRCGYC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 53, 192
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 88, 211, 270
BstMBI GATC 3 cut(s) 85, 208, 267
BstMWI GCNNNNNNNGC 2 cut(s) 57, 196
BstSCI CCNGG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 9
BsuRI GGCC 5 cut(s) 51, 78, 194, 205, 220
BtrI CACGTC 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 53, 192
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 2 cut(s) 51, 190
Cfr13I GGNCC 3 cut(s) 92, 120, 255
CviJI RGCY 7 cut(s) 51, 78, 137, 190, 194, 205, 220
CviKI_1 RGCY 7 cut(s) 51, 78, 137, 190, 194, 205, 220
DinI GGCGCC 1 cut(s) 56
DpnI GATC 3 cut(s) 87, 210, 269
DpnII GATC 3 cut(s) 85, 208, 267
EaeI YGGCCR 2 cut(s) 76, 218
EciI GGCGGA 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 92, 120, 255
EcoO109I RGGNCCY 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 56
EheI GGCGCC 1 cut(s) 56
FaiI YATR 3 cut(s) 148, 150, 273
Fnu4HI GCNGC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 5 cut(s) 51, 78, 194, 205, 220
HapII CCGG 5 cut(s) 52, 89, 191, 258, 299
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 245
HpaII CCGG 5 cut(s) 52, 89, 191, 258, 299
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 70, 213, 250
Hpy188III TCNNGA 3 cut(s) 95, 141, 164
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 2 cut(s) 14, 170
HpyAV CCTTC 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 7, 45
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 196
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 55
HspAI GCGC 1 cut(s) 55
KasI GGCGCC 1 cut(s) 54
KroI GCCGGC 2 cut(s) 51, 190
KroNI GCCGGC 2 cut(s) 53, 192
Kzo9I GATC 3 cut(s) 85, 208, 267
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 9 cut(s) 65, 102, 103, 108, 154, 204, 219, 271, 312
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 106
MalI GATC 3 cut(s) 87, 210, 269
MboI GATC 3 cut(s) 85, 208, 267
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 9, 265
Mly113I GGCGCC 1 cut(s) 55
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 18, 236
MnlI CCTC 5 cut(s) 91, 133, 205, 210, 288
MroNI GCCGGC 2 cut(s) 51, 190
MspI CCGG 5 cut(s) 52, 89, 191, 258, 299
MspR9I CCNGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 57, 196
NaeI GCCGGC 2 cut(s) 53, 192
NarI GGCGCC 1 cut(s) 55
NciI CCSGG 1 cut(s) 90
NdeII GATC 3 cut(s) 85, 208, 267
NgoMIV GCCGGC 2 cut(s) 51, 190
NlaIV GGNNCC 2 cut(s) 56, 93
NmeAIII GCCGAG 1 cut(s) 181
PdiI GCCGGC 2 cut(s) 53, 192
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 253
PluTI GGCGCC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 253
PpuMI RGGWCCY 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 56, 93
PspPI GGNCC 3 cut(s) 92, 120, 255
PspPPI RGGWCCY 1 cut(s) 120
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 3 cut(s) 85, 208, 267
Sau96I GGNCC 3 cut(s) 92, 120, 255
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 2 cut(s) 9, 265
SetI ASST 5 cut(s) 102, 109, 125, 181, 290
SfoI GGCGCC 1 cut(s) 56
SinI GGWCC 3 cut(s) 92, 120, 255
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SsiI CCGC 2 cut(s) 58, 110
SspDI GGCGCC 1 cut(s) 54
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 109
TauI GCSGC 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 37
VneI GTGCAC 1 cut(s) 5
VpaK11BI GGWCC 3 cut(s) 92, 120, 255
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.