Rroxscaffold_2G00108860

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
32958447 .. 32959919
1473 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00108860.1

Sequence Viewer

Length: 174 bp
ATGGCAGATACAAATGAAGATGATATGGATGATGAAGAATTTTTTGAAGCTATAAAGGGTATCTTGATGGCAATACAAGCAATTATCCATCTGATGCAAGACCTGCACTTAATCCCCGAACCCAATCCTCCACCCGTTGTTGAAGGCAATCACAATGCAGCAGAACAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.36

Weight (kDa)

4.05

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020127)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 38
AgsI TTSAA 2 cut(s) 47, 143
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 38
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 61, 96
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmsI GCATC 1 cut(s) 84
BseGI GGATG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 89
BspHI TCATGA 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 103
BstF5I GGATG 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 77, 103
BstV1I GCAGC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 111
CciI TCATGA 1 cut(s) 170
CviAII CATG 1 cut(s) 171
CviJI RGCY 1 cut(s) 50
CviKI_1 RGCY 1 cut(s) 50
FaeI CATG 1 cut(s) 174
FaiI YATR 3 cut(s) 26, 53, 172
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
Hin1II CATG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 64, 171
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 97, 106, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 103
Hsp92II CATG 1 cut(s) 174
LpnPI CCDG 1 cut(s) 116
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 84
MboII GAAGA 2 cut(s) 29, 47
MluCI AATT 2 cut(s) 38, 81
MnlI CCTC 1 cut(s) 138
MseI TTAA 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 77, 103
NlaIII CATG 1 cut(s) 174
PagI TCATGA 1 cut(s) 170
PkrI GCNGC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 159
SetI ASST 2 cut(s) 52, 105
SfaNI GCATC 1 cut(s) 84
SgeI CNNG 6 cut(s) 76, 89, 110, 115, 128, 146
Sse9I AATT 2 cut(s) 38, 81
TasI AATT 2 cut(s) 38, 81
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 30, 48
XapI RAATTY 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.