Rh7CG091800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020127
Physical Location & Seq
Forward (+)
6912265 .. 6913864
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG091800.1

Sequence Viewer

Length: 546 bp
ATGGATGGCTTTCCATGTGGTGCTCCTGGTCAGACATGGCTGGCTCCGATCTCCCATGGCTGTCATAACTTCGGCAATTTGAGAACTGCACACTACGACGGAAAGTCAAAGGAAATGATGGCTGAAGCCATCACTGGTAACTTGAGGTGCTGGCGGTGGGTGCAGAATCCTCCTTATCAGAAGCCTGATTCTGGAACTACTACTTCCGTTGCTTCTAGTATCACCATAAACCCAACTTCTGGTACTGCTGTCACTATAACCCCAGCTCCTGGCAGTACTGTCACCATAACCACCTCAACCTCTGGTATATCCCCCAGCACTTTTGAAACTACCTCAATTAATACACCTTCGTCAATTGGAGAAACTTCATCTCCATTTGTCAACAAGGTTCCGTTGAAATCCGAGGTGGCAGGTAGTGGGGTAGGATCTTGGATGTGGGATCCAACTTCTCTCCATGGGGTTGAATGGTCGATTCAACATATGGTGCAGAATGTCTCGGAGGTCCAGGGTGATGCTGATCCTGATATTGAAGAGGGAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.17

Weight (kDa)

5.22

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020127)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0052621
rosa_roxburghii Rroxscaffold_1G00048310 Rroxscaffold_1G00074030 Rroxscaffold_2G00108860
rosa_samantha Rh1CG004900 Rh7CG091800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 401
AccB7I CCANNNNNTGG 2 cut(s) 239, 269
AciI CCGC 1 cut(s) 154
AclWI GGATC 4 cut(s) 433, 434, 447, 512
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 244, 277
AfiI CCNNNNNNNGG 3 cut(s) 191, 239, 269
AgsI TTSAA 5 cut(s) 326, 397, 464, 476, 530
AhdI GACNNNNNGTC 1 cut(s) 103
AjnI CCWGG 3 cut(s) 25, 268, 504
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 4 cut(s) 433, 434, 447, 512
AlwNI CAGNNNCTG 1 cut(s) 269
AseI ATTAAT 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 3 cut(s) 214, 274, 521
AvaII GGWCC 1 cut(s) 502
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BamHI GGATCC 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 2 cut(s) 112, 137
BciT130I CCWGG 3 cut(s) 27, 270, 506
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 401
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 3 cut(s) 27, 270, 506
Bme18I GGWCC 1 cut(s) 502
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 3 cut(s) 45, 390, 441
BmrFI CCNGG 3 cut(s) 27, 270, 506
BmsI GCATC 1 cut(s) 502
BpuEI CTTGAG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 4 cut(s) 55, 402, 454, 505
BsaXI ACNNNNNCTCC 4 cut(s) 250, 280, 355, 385
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 239, 269
Bse1I ACTGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 3 cut(s) 27, 270, 506
BseDI CCNNGG 4 cut(s) 55, 402, 454, 505
BseGI GGATG 2 cut(s) 10, 438
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 191, 239, 269
BseNI ACTGG 1 cut(s) 139
BseYI CCCAGC 2 cut(s) 262, 314
BsgI GTGCAG 3 cut(s) 72, 182, 506
BsiHKAI GWGCWC 1 cut(s) 25
BslI CCNNNNNNNGG 3 cut(s) 191, 239, 269
BsmAI GTCTC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 48, 425, 439, 517
Bsp19I CCATGG 2 cut(s) 55, 454
BspACI CCGC 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 45, 390, 441
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 4 cut(s) 433, 434, 447, 512
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 4 cut(s) 55, 402, 454, 505
BssMI GATC 4 cut(s) 48, 425, 439, 517
BssT1I CCWWGG 2 cut(s) 55, 454
Bst2UI CCWGG 3 cut(s) 27, 270, 506
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 42, 152
BstDSI CCRYGG 2 cut(s) 55, 454
BstF5I GGATG 2 cut(s) 10, 438
BstKTI GATC 4 cut(s) 51, 428, 442, 520
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 4 cut(s) 48, 425, 439, 517
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 3 cut(s) 27, 270, 506
BstSCI CCNGG 3 cut(s) 25, 268, 504
BstX2I RGATCY 2 cut(s) 425, 439
BstYI RGATCY 2 cut(s) 425, 439
BtgI CCRYGG 2 cut(s) 55, 454
BtsCI GGATG 2 cut(s) 10, 438
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 42, 152
CaiI CAGNNNCTG 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 243, 276
CviAII CATG 4 cut(s) 15, 36, 56, 455
CviJI RGCY 8 cut(s) 9, 40, 44, 60, 122, 128, 184, 266
CviKI_1 RGCY 8 cut(s) 9, 40, 44, 60, 122, 128, 184, 266
CviQI GTAC 2 cut(s) 243, 276
DpnI GATC 4 cut(s) 50, 427, 441, 519
DpnII GATC 4 cut(s) 48, 425, 439, 517
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 525
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 2 cut(s) 55, 454
Eco47I GGWCC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 3 cut(s) 25, 268, 504
EcoT14I CCWWGG 2 cut(s) 55, 454
ErhI CCWWGG 2 cut(s) 55, 454
FaeI CATG 4 cut(s) 18, 39, 59, 458
FatI CATG 4 cut(s) 14, 35, 55, 454
FauNDI CATATG 1 cut(s) 480
FokI GGATG 2 cut(s) 17, 445
FspBI CTAG 1 cut(s) 216
GsaI CCCAGC 2 cut(s) 266, 318
Hin1II CATG 4 cut(s) 18, 39, 59, 458
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 3 cut(s) 166, 188, 472
HphI GGTGA 3 cut(s) 214, 274, 521
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 5 cut(s) 33, 48, 180, 403, 499
Hpy188III TCNNGA 2 cut(s) 192, 521
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 89, 163, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92II CATG 4 cut(s) 18, 39, 59, 458
Kzo9I GATC 4 cut(s) 48, 425, 439, 517
LmnI GCTCC 3 cut(s) 28, 49, 271
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 137, 250, 280
MalI GATC 4 cut(s) 50, 427, 441, 519
MboI GATC 4 cut(s) 48, 425, 439, 517
MboII GAAGA 1 cut(s) 542
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 2 cut(s) 425, 439
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 3 cut(s) 76, 336, 354
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 8 cut(s) 138, 180, 304, 310, 343, 397, 493, 526
MseI TTAA 1 cut(s) 339
MspR9I CCNGG 3 cut(s) 27, 270, 506
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 3 cut(s) 27, 270, 506
MwoI GCNNNNNNNGC 1 cut(s) 160
NcoI CCATGG 2 cut(s) 55, 454
NdeI CATATG 1 cut(s) 480
NdeII GATC 4 cut(s) 48, 425, 439, 517
NlaIII CATG 4 cut(s) 18, 39, 59, 458
NlaIV GGNNCC 3 cut(s) 45, 390, 441
NmuCI GTSAC 2 cut(s) 250, 280
PfeI GAWTC 3 cut(s) 166, 188, 472
PflMI CCANNNNNTGG 2 cut(s) 239, 269
PshBI ATTAAT 1 cut(s) 339
Psp6I CCWGG 3 cut(s) 25, 268, 504
PspFI CCCAGC 2 cut(s) 262, 314
PspGI CCWGG 3 cut(s) 25, 268, 504
PspN4I GGNNCC 3 cut(s) 45, 390, 441
PspPI GGNCC 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 2 cut(s) 425, 439
RsaI GTAC 2 cut(s) 244, 277
RsaNI GTAC 2 cut(s) 243, 276
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 4 cut(s) 48, 425, 439, 517
Sau96I GGNCC 1 cut(s) 502
ScaI AGTACT 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 27, 270, 506
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 502
SinI GGWCC 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 3 cut(s) 76, 336, 354
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 3 cut(s) 25, 268, 504
StyI CCWWGG 2 cut(s) 55, 454
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 470
TasI AATT 3 cut(s) 76, 336, 354
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 3 cut(s) 166, 188, 472
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 250, 280
Tsp45I GTSAC 2 cut(s) 250, 280
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 3 cut(s) 114, 196, 381
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 2 cut(s) 239, 269
VpaK11BI GGWCC 1 cut(s) 502
VspI ATTAAT 1 cut(s) 339
XspI CTAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.