Rroxscaffold_2G00110450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016870
Physical Location & Seq
Forward (+)
34728216 .. 34740044
11829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110450.1

Sequence Viewer

Length: 393 bp
ATGACCTTGGAAAACCCTAAGGGATTGTGTGAGTTCTCGCATAAGTCGGGCGGCGGTCTTTGGCGTGTCCGGGCTCCACCGGGTCAAATTCGGTCTAGCATTACGGACGAAGTGGACCAAGTTTATAGCGGCACATTGCTCCGTCGGCATGCTTCAAATTTTTTGGTTTGGGAAACTCCCTCTGTTGTTGCTCTAGATCATCATGAAAAGTTCTTTGTGATGGTAGATGATATGATCAACACCGCTGAGTTATTCTCTCAAGCACTCAGTAAGCATATCTGTGATCACTCTTCAAGTTGTATTGGAAAGCCGAATTTGCTGCAATCTTCTTCATTACCAGCTCGTCGCAGGGATCCTAGTGCATCTTCCCGTGGTAACTGTTCGTTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.37

Weight (kDa)

7.76

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016870)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06351 FvH4_6g06351
rosa_chinensis RchiOBHm_Chr3g0455451
rosa_laevigata RLG00000025361
rosa_multiflora Rmu_sc0003728.1_g000002
rosa_roxburghii Rroxscaffold_2G00110450 Rroxscaffold_6G00424270
rosa_rugosa Rorug03G0007700 Rorug03G0007700
rosa_samantha Rh3AG067100 Rh3BG069400 Rh3CG067900 Rh3DG069400
rosa_wichuraiana Rw3G005300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 51, 54, 129, 243
AclWI GGATC 2 cut(s) 347, 360
AcsI RAATTY 3 cut(s) 87, 157, 313
AgsI TTSAA 2 cut(s) 156, 294
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
AlwI GGATC 2 cut(s) 347, 360
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 3 cut(s) 87, 157, 313
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 2 cut(s) 71, 81
AvaII GGWCC 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 18
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BclI TGATCA 2 cut(s) 234, 283
BcnI CCSGG 2 cut(s) 71, 81
BfaI CTAG 3 cut(s) 96, 194, 357
BisI GCNGC 3 cut(s) 52, 130, 320
BlsI GCNGC 3 cut(s) 53, 131, 321
Bme1390I CCNGG 2 cut(s) 71, 81
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 75, 354
BmrFI CCNGG 2 cut(s) 71, 81
BmsI GCATC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpuEI CTTGAG 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 71, 81
BsaJI CCNNGG 2 cut(s) 6, 370
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 6, 370
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 237, 280
BseXI GCAGC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 70, 80
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 4 cut(s) 196, 234, 283, 352
BspACI CCGC 4 cut(s) 51, 54, 129, 243
BspCNI CTCAG 2 cut(s) 238, 279
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 75, 354
BspPI GGATC 2 cut(s) 347, 360
BsrDI GCAATG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 6, 370
BssMI GATC 4 cut(s) 196, 234, 283, 352
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 3 cut(s) 18, 246, 266
BstDSI CCRYGG 1 cut(s) 370
BstKTI GATC 4 cut(s) 199, 237, 286, 355
BstMBI GATC 4 cut(s) 196, 234, 283, 352
BstMWI GCNNNNNNNGC 2 cut(s) 145, 316
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 69, 79
BstV1I GCAGC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 115
CviAII CATG 2 cut(s) 149, 203
CviJI RGCY 3 cut(s) 74, 310, 341
CviKI_1 RGCY 3 cut(s) 74, 310, 341
DdeI CTNAG 3 cut(s) 18, 246, 266
DpnI GATC 4 cut(s) 198, 236, 285, 354
DpnII GATC 4 cut(s) 196, 234, 283, 352
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 115
Eco81I CCTNAGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 152, 206
FaiI YATR 7 cut(s) 42, 126, 150, 204, 233, 276, 391
FatI CATG 2 cut(s) 148, 202
FbaI TGATCA 2 cut(s) 234, 283
Fnu4HI GCNGC 3 cut(s) 52, 130, 320
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 3 cut(s) 52, 130, 320
FspBI CTAG 3 cut(s) 96, 194, 357
GluI GCNGC 3 cut(s) 52, 130, 320
HapII CCGG 2 cut(s) 70, 80
Hin1II CATG 2 cut(s) 152, 206
HpaII CCGG 2 cut(s) 70, 80
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 194, 203
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 2 cut(s) 147, 348
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 322, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 316
HpyF3I CTNAG 3 cut(s) 18, 246, 266
Hsp92II CATG 2 cut(s) 152, 206
Ksp22I TGATCA 2 cut(s) 234, 283
Kzo9I GATC 4 cut(s) 196, 234, 283, 352
LmnI GCTCC 2 cut(s) 79, 144
LpnPI CCDG 4 cut(s) 83, 93, 334, 351
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 371
MaeI CTAG 3 cut(s) 96, 194, 357
MaeIII GTNAC 1 cut(s) 374
MalI GATC 4 cut(s) 198, 236, 285, 354
MboI GATC 4 cut(s) 196, 234, 283, 352
MboII GAAGA 4 cut(s) 282, 318, 321, 357
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 87, 157, 313
MnlI CCTC 1 cut(s) 190
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 70, 80
MspR9I CCNGG 2 cut(s) 71, 81
MwoI GCNNNNNNNGC 2 cut(s) 145, 316
NciI CCSGG 2 cut(s) 71, 81
NdeII GATC 4 cut(s) 196, 234, 283, 352
NlaIII CATG 2 cut(s) 152, 206
NlaIV GGNNCC 2 cut(s) 75, 354
NspI RCATGY 1 cut(s) 152
PaeI GCATGC 1 cut(s) 152
PagI TCATGA 1 cut(s) 202
PkrI GCNGC 3 cut(s) 53, 131, 321
PspN4I GGNNCC 2 cut(s) 75, 354
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 279
SatI GCNGC 3 cut(s) 52, 130, 320
Sau3AI GATC 4 cut(s) 196, 234, 283, 352
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 71, 81
SduI GDGCHC 1 cut(s) 76
SetI ASST 2 cut(s) 8, 343
SfaNI GCATC 1 cut(s) 371
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SphI GCATGC 1 cut(s) 152
Sse9I AATT 3 cut(s) 87, 157, 313
SsiI CCGC 4 cut(s) 51, 54, 129, 243
SspMI CTAG 3 cut(s) 96, 194, 357
StyD4I CCNGG 2 cut(s) 69, 79
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 380
TaqII GACCGA 1 cut(s) 81
TasI AATT 3 cut(s) 87, 157, 313
TauI GCSGC 2 cut(s) 54, 132
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 219, 321
TspGWI ACGGA 2 cut(s) 119, 131
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 3 cut(s) 87, 157, 313
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 152
XspI CTAG 3 cut(s) 96, 194, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.