Rroxscaffold_2G00112860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019903
Physical Location & Seq
Forward (+)
38257684 .. 38258554
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112860.1

Sequence Viewer

Length: 327 bp
ATGGAAGGACCAGTCACATATACAATTGGATTATTTCAGTCTTTCTCTTCTCTCTCACTTCGACTCGGTCACCATCCCTTTCCCCTCTCGCTTGCTCTCCTACCAGTGGAGATCATGGTCTCCGGCCACCACTTCTTGTCACCTCCACCATTGCGTGAACCGGCTTCCAATTCCGAGCAAGACCTAAGCTCAACACGACCTTGCATCAACTTCGGCCTCCACACGCTCCCTTCAAGTCCGAAGTGCAGCTGCTCCTCCAAGATCACCGAGTCTCCAATCAGTCCTCAACTTCATCACCTCGGTGCCTTAACCCGAGCCGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.61

Weight (kDa)

6.63

Isoelectric Point (pI)

69.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 234
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 2 cut(s) 189, 249
AluI AGCT 2 cut(s) 189, 249
Alw26I GTCTC 2 cut(s) 124, 276
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 2 cut(s) 124, 214
ApeKI GCWGC 2 cut(s) 246, 249
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 4 cut(s) 62, 132, 256, 287
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 236, 258
BccI CCATC 2 cut(s) 81, 314
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BcoDI GTCTC 2 cut(s) 124, 276
BisI GCNGC 2 cut(s) 247, 250
BlsI GCNGC 2 cut(s) 248, 251
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 11, 104
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 11, 104
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 236, 258
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 126, 216
BshNI GGYRCC 1 cut(s) 302
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 2 cut(s) 123, 161
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 124, 276
BsnI GGCC 2 cut(s) 126, 216
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 312
Bsp143I GATC 2 cut(s) 111, 261
BspANI GGCC 2 cut(s) 126, 216
BspLI GGNNCC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 2 cut(s) 11, 104
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 2 cut(s) 111, 261
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 185
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 114, 264
BstMAI GTCTC 2 cut(s) 124, 276
BstMBI GATC 2 cut(s) 111, 261
BstPI GGTNACC 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 236, 258
BsuRI GGCC 2 cut(s) 126, 216
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 8
CviAII CATG 1 cut(s) 115
CviJI RGCY 6 cut(s) 126, 164, 189, 216, 249, 317
CviKI_1 RGCY 6 cut(s) 126, 164, 189, 216, 249, 317
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 113, 263
DpnII GATC 2 cut(s) 111, 261
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
FaeI CATG 1 cut(s) 118
FaiI YATR 3 cut(s) 19, 21, 116
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 247, 250
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 247, 250
GluI GCNGC 2 cut(s) 247, 250
HaeIII GGCC 2 cut(s) 126, 216
HapII CCGG 2 cut(s) 123, 161
Hin1II CATG 1 cut(s) 118
HinfI GANTC 2 cut(s) 63, 269
HpaII CCGG 2 cut(s) 123, 161
HphI GGTGA 4 cut(s) 62, 132, 256, 287
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 175, 240
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 204, 246
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 2 cut(s) 111, 261
LmnI GCTCC 2 cut(s) 231, 257
LpnPI CCDG 4 cut(s) 24, 117, 136, 174
Lsp1109I GCAGC 2 cut(s) 236, 258
LweI GCATC 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 13, 68, 138
MalI GATC 2 cut(s) 113, 263
MboI GATC 2 cut(s) 111, 261
MboII GAAGA 1 cut(s) 39
MfeI CAATTG 1 cut(s) 24
MluCI AATT 2 cut(s) 24, 169
MlyI GAGTC 2 cut(s) 57, 278
MnlI CCTC 6 cut(s) 95, 153, 227, 265, 294, 308
MseI TTAA 2 cut(s) 308, 325
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 2 cut(s) 123, 161
MunI CAATTG 1 cut(s) 24
NdeII GATC 2 cut(s) 111, 261
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 3 cut(s) 13, 68, 138
OliI CACNNNNGTG 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 248, 251
PleI GAGTC 2 cut(s) 57, 277
PpsI GAGTC 2 cut(s) 57, 277
PspEI GGTNACC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 8
PsyI GACNNNGTC 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 308, 325
SatI GCNGC 2 cut(s) 247, 250
Sau3AI GATC 2 cut(s) 111, 261
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 2 cut(s) 57, 278
SetI ASST 6 cut(s) 145, 186, 191, 202, 251, 300
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 24, 169
TaqI TCGA 1 cut(s) 61
TaqII GACCGA 1 cut(s) 56
TasI AATT 2 cut(s) 24, 169
Tru1I TTAA 2 cut(s) 308, 325
Tru9I TTAA 2 cut(s) 308, 325
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 3 cut(s) 13, 68, 138
TseI GCWGC 2 cut(s) 246, 249
Tsp45I GTSAC 3 cut(s) 13, 68, 138
TspDTI ATGAA 1 cut(s) 281
TspRI CASTG 1 cut(s) 111
Tth111I GACNNNGTC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.