Rroxscaffold_6G00390550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019903
Physical Location & Seq
Reverse (-)
5785364 .. 5796063
10700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390550.1

Sequence Viewer

Length: 702 bp
ATGGAACAAGGACAGATCTATGACATCTCCCATTTCTCCGGACGGAAACACGTATCCAAATACAAAGTTGTAGATCATGATGCTCACCTGTATTTCAAAGAGTCAACTAAATTTGAACCGAGTGGGACATACGTTGCCTCCAATTCTGCAGCTATGTTAGAAATGCTCTCACCTTCCCCTCTGCTTGTTCTCCCGCCAATGGAGATCATGGTCTCCGGCCACCTCTTCTTGCCACCTCCACCGTTGTGTGAACTAGCTTCCAATTCCGAGCAAGACCTAAGCTCAACACGGCCTTGCATCAACTTCAGCCTCCACACGCTCCCTTCAATCGAAGAGCTACGTTCCTCGAAGACCATCGACCTCCGATCATCAACCAGAACGATGGTTATGATCTCCAAGCCTGCAGCTCTCCAATATCGAACACCACCATTCGCGCGCTGGCCGGAATCAAGTCAAGTTTCCGGCTTGTTAGATCGAAGCCACCGCCGGACTAGGACCAGGCCAAGACAACGCAATCCAAGTGGAGGGCGTTCGGCATCGATGAGAGGGTGCACTGCTAGTGAGGAGTTAGATGGTGTTAGTGTCAATGGAGAGGAGGTGGACGCTGCGAAGGTGGCCTGCTTTCCCGGCTTGCTTCCCCACCTCAAAGTTCTTGGACCGGACAAGAACAATGGTGAGACCAGTTCCAAGTTCGGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.67

Weight (kDa)

8.68

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 434, 436
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 2 cut(s) 194, 484
AcoI YGGCCR 2 cut(s) 217, 440
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 199, 524
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 3 cut(s) 97, 116, 327
AjnI CCWGG 1 cut(s) 497
AleI CACNNNNGTG 1 cut(s) 244
AluBI AGCT 5 cut(s) 152, 257, 282, 337, 407
AluI AGCT 5 cut(s) 152, 257, 282, 337, 407
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 2 cut(s) 217, 671
Alw44I GTGCAC 1 cut(s) 550
Aor13HI TCCGGA 1 cut(s) 38
AoxI GGCC 5 cut(s) 217, 290, 440, 500, 615
ApaLI GTGCAC 1 cut(s) 550
ApeKI GCWGC 3 cut(s) 149, 404, 605
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 2 cut(s) 436, 438
AspS9I GGNCC 2 cut(s) 495, 656
AsuC2I CCSGG 1 cut(s) 627
AsuHPI GGTGA 3 cut(s) 77, 162, 686
AvaII GGWCC 2 cut(s) 495, 656
BaeGI GKGCMC 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 161, 416, 592
BccI CCATC 3 cut(s) 362, 376, 566
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 499
BciVI GTATCC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 627
BcoDI GTCTC 2 cut(s) 217, 671
BfaI CTAG 3 cut(s) 254, 492, 558
BfmI CTRYAG 2 cut(s) 147, 402
BfuI GTATCC 1 cut(s) 64
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 150, 405, 606
BlsI GCNGC 3 cut(s) 151, 406, 607
Bme1390I CCNGG 2 cut(s) 499, 627
Bme18I GGWCC 2 cut(s) 495, 656
BmgT120I GGNCC 2 cut(s) 495, 656
BmrFI CCNGG 2 cut(s) 499, 627
BmsI GCATC 3 cut(s) 70, 306, 545
BpiI GAAGAC 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 627
Bsa29I ATCGAT 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 217, 671
BsaWI WCCGGW 2 cut(s) 38, 658
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 524
Bse1I ACTGG 1 cut(s) 681
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 499
BseCI ATCGAT 1 cut(s) 539
BseLI CCNNNNNNNGG 2 cut(s) 199, 524
BseNI ACTGG 1 cut(s) 681
BsePI GCGCGC 1 cut(s) 434
BseRI GAGGAG 2 cut(s) 578, 608
BseSI GKGCMC 1 cut(s) 554
BseXI GCAGC 3 cut(s) 161, 416, 592
Bsh1236I CGCG 2 cut(s) 434, 436
BshFI GGCC 5 cut(s) 219, 292, 442, 502, 617
BshVI ATCGAT 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 7 cut(s) 39, 216, 443, 462, 487, 627, 659
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 199, 524
BsmAI GTCTC 2 cut(s) 217, 671
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 5 cut(s) 219, 292, 442, 502, 617
Bso31I GGTCTC 2 cut(s) 217, 671
Bsp1286I GDGCHC 1 cut(s) 554
Bsp13I TCCGGA 1 cut(s) 38
Bsp143I GATC 6 cut(s) 15, 73, 204, 365, 390, 472
BspACI CCGC 2 cut(s) 194, 484
BspANI GGCC 5 cut(s) 219, 292, 442, 502, 617
BspDI ATCGAT 1 cut(s) 539
BspEI TCCGGA 1 cut(s) 38
BspFNI CGCG 2 cut(s) 434, 436
BspHI TCATGA 1 cut(s) 76
BspMAI CTGCAG 2 cut(s) 151, 406
BspQI GCTCTTC 1 cut(s) 327
BspTNI GGTCTC 2 cut(s) 217, 671
BsrI ACTGG 1 cut(s) 681
BssHII GCGCGC 1 cut(s) 434
BssMI GATC 6 cut(s) 15, 73, 204, 365, 390, 472
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 2 cut(s) 230, 327
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 5 cut(s) 402, 436, 440, 619, 632
BstDEI CTNAG 1 cut(s) 278
BstFNI CGCG 2 cut(s) 434, 436
BstHHI GCGC 2 cut(s) 436, 438
BstKTI GATC 6 cut(s) 18, 76, 207, 368, 393, 475
BstMAI GTCTC 2 cut(s) 217, 671
BstMBI GATC 6 cut(s) 15, 73, 204, 365, 390, 472
BstMWI GCNNNNNNNGC 2 cut(s) 614, 627
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 497, 625
BstSFI CTRYAG 2 cut(s) 147, 402
BstSLI GKGCMC 1 cut(s) 554
BstUI CGCG 2 cut(s) 434, 436
BstV1I GCAGC 3 cut(s) 161, 416, 592
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 15
Bsu15I ATCGAT 1 cut(s) 539
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 5 cut(s) 219, 292, 442, 502, 617
BsuTUI ATCGAT 1 cut(s) 539
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 5 cut(s) 402, 436, 440, 619, 632
CciI TCATGA 1 cut(s) 76
CfoI GCGC 2 cut(s) 436, 438
Cfr13I GGNCC 2 cut(s) 495, 656
ClaI ATCGAT 1 cut(s) 539
CseI GACGC 1 cut(s) 611
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 2 cut(s) 77, 208
DdeI CTNAG 1 cut(s) 278
DpnI GATC 6 cut(s) 17, 75, 206, 367, 392, 474
DpnII GATC 6 cut(s) 15, 73, 204, 365, 390, 472
EaeI YGGCCR 2 cut(s) 217, 440
Eam1104I CTCTTC 2 cut(s) 230, 327
EarI CTCTTC 2 cut(s) 230, 327
Eco31I GGTCTC 2 cut(s) 217, 671
Eco47I GGWCC 2 cut(s) 495, 656
Eco57I CTGAAG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 497
FaeI CATG 2 cut(s) 80, 211
FaiI YATR 6 cut(s) 21, 78, 130, 155, 209, 389
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 76, 207
FauI CCCGC 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 150, 405, 606
Fsp4HI GCNGC 3 cut(s) 150, 405, 606
FspBI CTAG 3 cut(s) 254, 492, 558
GlaI GCGC 2 cut(s) 435, 437
GluI GCNGC 3 cut(s) 150, 405, 606
HaeIII GGCC 5 cut(s) 219, 292, 442, 502, 617
HapII CCGG 7 cut(s) 39, 216, 443, 462, 487, 627, 659
HgaI GACGC 1 cut(s) 611
HhaI GCGC 2 cut(s) 436, 438
Hin1II CATG 2 cut(s) 80, 211
Hin6I GCGC 2 cut(s) 434, 436
HinP1I GCGC 2 cut(s) 434, 436
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 2 cut(s) 101, 446
HpaII CCGG 7 cut(s) 39, 216, 443, 462, 487, 627, 659
HphI GGTGA 3 cut(s) 77, 162, 686
Hpy166II GTNNAC 4 cut(s) 105, 251, 552, 601
Hpy188I TCNGA 2 cut(s) 268, 365
Hpy188III TCNNGA 2 cut(s) 39, 77
Hpy8I GTNNAC 4 cut(s) 105, 251, 552, 601
HpyAV CCTTC 3 cut(s) 183, 333, 604
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 3 cut(s) 51, 132, 340
HpyCH4V TGCA 4 cut(s) 149, 297, 404, 552
HpyF10VI GCNNNNNNNGC 2 cut(s) 614, 627
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 3 cut(s) 51, 132, 340
Hsp92II CATG 2 cut(s) 80, 211
HspAI GCGC 2 cut(s) 434, 436
Kpn2I TCCGGA 1 cut(s) 38
Kzo9I GATC 6 cut(s) 15, 73, 204, 365, 390, 472
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 3 cut(s) 161, 416, 592
LweI GCATC 3 cut(s) 70, 306, 545
MaeI CTAG 3 cut(s) 254, 492, 558
MaeII ACGT 3 cut(s) 51, 132, 340
MalI GATC 6 cut(s) 17, 75, 206, 367, 392, 474
MboI GATC 6 cut(s) 15, 73, 204, 365, 390, 472
MboII GAAGA 3 cut(s) 217, 344, 361
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 554
MluCI AATT 3 cut(s) 110, 142, 262
MlyI GAGTC 1 cut(s) 110
MroI TCCGGA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 244
MspI CCGG 7 cut(s) 39, 216, 443, 462, 487, 627, 659
MspR9I CCNGG 2 cut(s) 499, 627
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 2 cut(s) 434, 436
MwoI GCNNNNNNNGC 2 cut(s) 614, 627
NciI CCSGG 1 cut(s) 627
NdeII GATC 6 cut(s) 15, 73, 204, 365, 390, 472
NlaIII CATG 2 cut(s) 80, 211
OliI CACNNNNGTG 1 cut(s) 244
PagI TCATGA 1 cut(s) 76
PauI GCGCGC 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 3 cut(s) 151, 406, 607
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspPI GGNCC 2 cut(s) 495, 656
PstI CTGCAG 2 cut(s) 151, 406
PsuI RGATCY 1 cut(s) 15
PteI GCGCGC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 327
SatI GCNGC 3 cut(s) 150, 405, 606
Sau3AI GATC 6 cut(s) 15, 73, 204, 365, 390, 472
Sau96I GGNCC 2 cut(s) 495, 656
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 499, 627
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 3 cut(s) 70, 306, 545
SfcI CTRYAG 2 cut(s) 147, 402
SinI GGWCC 2 cut(s) 495, 656
SmiMI CAYNNNNRTG 1 cut(s) 244
Sse9I AATT 3 cut(s) 110, 142, 262
SsiI CCGC 2 cut(s) 194, 484
SspMI CTAG 3 cut(s) 254, 492, 558
StyD4I CCNGG 2 cut(s) 497, 625
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 3 cut(s) 54, 135, 343
TaqI TCGA 6 cut(s) 330, 347, 357, 418, 475, 539
TaqII GACCGA 1 cut(s) 683
TasI AATT 3 cut(s) 110, 142, 262
TfiI GAWTC 1 cut(s) 446
TscAI CASTG 1 cut(s) 559
TseI GCWGC 3 cut(s) 149, 404, 605
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 550
VpaK11BI GGWCC 2 cut(s) 495, 656
XapI RAATTY 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 435
XspI CTAG 3 cut(s) 254, 492, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.