Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019903

Physical Location & Seq

Genomic Coordinates Reverse (-)

46031505 .. 46034831

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGGAAGCAACCAAGCAGCCGGGAGTAGTTCCAACATGCATTTCGGGTGGAGCAAGTGCCGGGTGGACCCCCACTCCGGATCGGATAAGAATCCTCAAGGAGCTTTACTATGACAAGGGAGTTAACTCTCACCTTTCCCTCTCGCTTGTTCTCCCGCCAATGGAGATCATGGTCTCCGGCCACCCCTTCTTGCCAACTCCACCGTTGTGTGAACTAGCTTCCAATTCCGAGCAAGACCTAAGCTCAACACAGCCTTGCATCAACTTCGGCCTCCACACGCTCCCTTCAATCGAAGAGCTACTGTTCCTCGAAGACCATCGACCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

110

Amino Acids

12.07

Weight (kDa)

5.01

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019903)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472761
rosa_roxburghii	Rroxscaffold_1G00038490 Rroxscaffold_2G00112860 Rroxscaffold_6G00390550 Rroxscaffold_7G00199430
rosa_rugosa	Rorug03G0256400 Rorug03G0300800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	79, 163
AgsI	TTSAA	1 cut(s)	291
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AleI	CACNNNNGTG	1 cut(s)	208
AluBI	AGCT	4 cut(s)	106, 221, 246, 301
AluI	AGCT	4 cut(s)	106, 221, 246, 301
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	2 cut(s)	181, 271
ApeKI	GCWGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	2 cut(s)	24, 64
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	327
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcnI	CCSGG	2 cut(s)	24, 64
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	24, 64
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	24, 64
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	24, 64
BsaBI	GATNNNNATC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 163
Bse8I	GATNNNNATC	1 cut(s)	92
BseAI	TCCGGA	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	79, 163
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	2 cut(s)	183, 273
BsiSI	CCGG	4 cut(s)	23, 63, 80, 180
BslI	CCNNNNNNNGG	2 cut(s)	79, 163
BsmAI	GTCTC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	183, 273
Bso31I	GGTCTC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	82, 168
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	2 cut(s)	183, 273
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	181
BssMI	GATC	2 cut(s)	82, 168
Bst4CI	ACNGT	2 cut(s)	207, 306
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	242
BstKTI	GATC	2 cut(s)	85, 171
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	82, 168
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	22, 62
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	183, 273
Cfr13I	GGNCC	1 cut(s)	69
CviAII	CATG	2 cut(s)	39, 172
CviJI	RGCY	8 cut(s)	22, 106, 183, 221, 246, 256, 273, 301
CviKI_1	RGCY	8 cut(s)	22, 106, 183, 221, 246, 256, 273, 301
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	84, 170
DpnII	GATC	2 cut(s)	82, 168
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	44
FaeI	CATG	2 cut(s)	42, 175
FaiI	YATR	3 cut(s)	40, 114, 173
FatI	CATG	2 cut(s)	38, 171
FauI	CCCGC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	183, 273
HapII	CCGG	4 cut(s)	23, 63, 80, 180
Hin1II	CATG	2 cut(s)	42, 175
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	93
HpaI	GTTAAC	1 cut(s)	127
HpaII	CCGG	4 cut(s)	23, 63, 80, 180
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	3 cut(s)	69, 127, 215
Hpy188I	TCNGA	2 cut(s)	87, 232
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	3 cut(s)	69, 127, 215
HpyAV	CCTTC	2 cut(s)	199, 297
HpyCH4III	ACNGT	2 cut(s)	207, 306
HpyCH4V	TGCA	2 cut(s)	42, 261
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	42, 175
Kpn2I	TCCGGA	1 cut(s)	79
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	82, 168
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	3 cut(s)	53, 103, 288
LpnPI	CCDG	4 cut(s)	36, 76, 93, 193
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	218
MalI	GATC	2 cut(s)	84, 170
MboI	GATC	2 cut(s)	82, 168
MboII	GAAGA	2 cut(s)	308, 326
MluCI	AATT	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	107, 152, 284, 320
Mph1103I	ATGCAT	1 cut(s)	44
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	208
MspI	CCGG	4 cut(s)	23, 63, 80, 180
MspR9I	CCNGG	2 cut(s)	24, 64
NciI	CCSGG	2 cut(s)	24, 64
NdeII	GATC	2 cut(s)	82, 168
NlaIII	CATG	2 cut(s)	42, 175
NlaIV	GGNNCC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	44
NspI	RCATGY	1 cut(s)	42
OliI	CACNNNNGTG	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	82, 168
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	24, 64
SetI	ASST	7 cut(s)	108, 138, 223, 243, 248, 303, 328
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	22, 62
TaaI	ACNGT	2 cut(s)	207, 306
TaqI	TCGA	4 cut(s)	294, 312, 322, 328
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	69
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.