Rroxscaffold_2G00118700

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
50417112 .. 50426245
9134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118700.1

Sequence Viewer

Length: 4008 bp
ATGGCTCCGTCGTTTGAGTTTCCCCAAAGCCTGAGAGCGTTGGAAGAGGACGGAGAAGACAACCGCCTCTACGCTCGGAACCCAATCGACATCGCTTCTCTTCGTCCCTCCCAACTCGAAGAGTTCGTCAAAGGCATATCCTTTGATCTTTCCGATAAAGAGCTATTCTGTATAGAAGAGCAAGATGTGTTTGATAGTGTGTACTCACTGGTTCGGGGTTACAATGGTCTACCTGCAACTTGTAAAGTTAATCTCGTAGAAAGTCTGCGGTCCAATCTGAGTGTTCTCCTCCCAAATGTTGATTCACTCTCACGGTCTTCTCAAGGTCAGGATGATGCCACTCCGGTGCTGGATCGGGTCGCATCACATCGTAATGCTTTAAAAATCTACACATACTTTCTCTTTACTGTGGTTCTCAATGAGGAGGTTAACATCACTTCCAACAACAATACAAAGGTGACAGCTAGTACCAGGAAGAAGCACCCTAAGAATTCATGGAACTGGGAACCACAAAGGGGCCGCATACTTAATCTGATTGCTAATTCACTGGAGATAAAGCTTGCATTGCTCTTTGGTCCAACAGGCCTAGAAGAAAATTATATTTCTTTTATTGCCAAAAATGCATTTGCTTTGTTTGAAAATGCTACAGTACTAAAGGACTCTGATACAAAAGATGCTCTGTGTCGTATAATTGGGGCCTGTGCTACAAAATACCAGTATATGTCACAATCATGTGCGTCGATCATGCATCTAGTTCACAAATATGATTTTGTTGTTACTCACATTGCTGATGCGGTTGCTGGGGCTGAGAAGAAGTATGCAGATGGAAGCTTAGCTAATTCTCTTATCAGAGAGATTGGGAGGTCAAATCCAAAGGACTACATCAAGGATACCGTTGGGGCTGAAAATGTTGGTCGTCTTTTGGTGGAACTTTCTGATCGGTTACCAAAGTTGATGTCTGTTAACATTGGCCTTCTTGTCCCACATTTTGGTGGGGAATCTTATAAAATAAGGAATGCTCTTGTTGGGGTCTTGGGAAAATTGGTTGCAAAGGCTTTTAAAGATGTTGAGGGTGAAGTGAATTCTAAATCTGTTCGTCTTCGAACCAAGCAAGCCATGTTGGAAATTTTGCTTGAGCGGTGTCGAGATGTATCAGCTTATACCCGGAGTCGGGTTCTCCAAATTTGGGCTGAACTATGCGAAGAACATTGTGTTTCAATTGGATTGTGGAATGAGCTGGCTGAAGTTGCTGCTGGGAGGTTAGAGGATAAGAGTGCAATGGTCAGAAAATCAGCATTAAATTTACTTATCATGATGTTGCAGCATAACCCATTTGGTCCACAGCTTCGAATAGCTTCTTTTGAAGCAACCCTACAACAGTACAAGAAGAAGCTGAAAGAGCTTGAACCAGATACTCCCTCAGAAAGTGATATGAACAGATTACCATCTTTCAGCAATACATCGGGGAATACTGAGGTTGATGATGTAACTGCAGGGTTGACCAAGGTGCAGCAGGATAGCTTACCTGATAGTTGCTTGCCTCAGATGGAAGAAGATCTAGTTCAGAAGGATGGGTGTGTCCCAGATGTTGGGAACTTAGAGCAGACTAGGGCTTTGGTAGCTTCACTTGAGGCTGGATTAAGGTTTTCAAAGTGTATATCTACCACAATCCCAACACTTGCTCAATTGATGGCATCATCTTCTGCCACTGACGTTGAGAACACAATAAATTTGTTAATGAGGTGCCGACAATTTCAAATTGATGCCTCAGAAGCATGTCTTCATAAGATGTTGCCACTGGTATTTTCTCAGGACAAATCCATCTATGAAGCTGTGGAAAATGCCTTCATTACAATTTACATAAAGAAAAACCCCGTAGAAGCGGCCAAGAATCTTATAAATCTTGCCATAGAATCAAATATTGGAGATCTAGCTGCTCTTGAGTTTATAGTTGGTGCCTTGGTGTCCAAAGGCAACATATCCAATGCTGCGATATCAGCGTTATGGGATTTCTTTTGCTTCAACATAAGTGGAACTACTTCTATTCAAAGTTGTGGAGCACTGTCTATCCTTTGCATGGCAGCAAAATCATCCTCTGCAGTTCTTAGCTCTCATTTACAGGACATTATTGATATTGGGTTTGGCCGTTGGGCAAAAATAGAACCGTTGCTTGCTAGGACAGCATGCGTTGCTCTTCAGAGATTATCTGAAGATGATAGGAAAAAGTTGTTATCTAGTAATGGAAGCCGGGCTTTTGGTATTTTAGAAAGCTTAATTACTGGTTTTTGGCTTCCAGAAAACATATGGTATGCTGCTGCTGACAAAGCCATAGCTGCTATATATACAATTCATCCAACACCGGAAACTTTCGCTGCCAATCTAGTCAAGAAGTCGCTAAGATCTGTGTTTGATTGTAGTGGAGGTGAGGAGTTGCATAATGAAATTGGCAGTGCTGGAATACTTACAACTGTTCAAGTGGAAAGACTTGGTAGATATCTCTTTGTCATAAGTCATGTTGCCATGAACCAGCTACTATATATCGAATCCTGCCTGCGGAAGGTTCAGAAACAGAAAGTTGGCAAAGAGAAGATGAATTATGATTTTCAGCATGCTAATGGTGCAATGCCAGCTGATACCTCAAAGGAAATTGGTATAAATGCTGAGCTTGGCCTTACCGCCTCTGAAGATGCAATACTTGACACTCTCTCTGACAAAGCAGAAAAAGAGATAGTTTGTGGTGGTTCCACGGAGAAGAATTTGATTGGACATTGTGCACCCTTTCTGTCAAAACTTTGTAGAAATTTTAGTTTAATGCAAAAGTATCCGGAACTACAAGTATCTGCAATGCTTGCTTTGTGTCGGTTTATGATTATTGATGCATGTTTCTGTGACACAAATCTCCAGCTACTCTTCACAGTTGTGGAGAGTGCACCATCAGAAATTGTCCGTTCCAATTGCACTATTTGTCTTGGAGATTTGGCAGTTCGGTTCCCTAATTTGTTAGAACCATGGACAGAGAATATGTATTCCAGGCTACAGGATCCTTCAGTTTCTGTTAGGAAGAACGCTGTTTTGGTGCTATCACACCTCATACTAAACGACATGATGAAGGTCAAAGGTTACATAAATGAAATGGCCATAAGATTAGAAGATGAAGATGAGAGGATTTCAAATCTGGCTAAGCTATTTTTTAATGAGTTATCCAAAAAAGGTAGCAATCCAATATATAACCTGCTTCCGGATATTCTTGGGAAATTATCCAACCAGAATCTCAAGAGAGAATCTTTCTGCAACATCATGCAGTTTTTGATTGGTTCTATCAAGAAGGACAAACAAATGGAATCTCTTGTTGAAAAACTTTGTAATAGATTCAGTGGAGTTACAGATATCAGACAATGGGAATATATTTCTTATTGCCTTTCTCAGTTGGCATTCACTGAAAAGGGAATGAAGAAGCTTATGGAGTCATTCAAGACATATGAACATGTCCTATCAGAGGATTCTGTGATGGACCATTTTAAGTCCATAATAAACAAGGGCAAGAAGTTTGCAAAACCTGAACTTAAACTGTGCATTGAGGAGTTTGAGGATAAGCTGAATAAGTTCCACTTGGAAAAGAAAGAACAAGAAGTAACAGCAAGAAATGCCCAAATTCATCAACAGAAGATTGACAGCATGGAAGATTTTGTGGTTACTAGGAATGCTGGCGAGGCTAATATGGAATCAGATAATGATGAAGGAACAGATGGTGAAGTCATTGATCCATGTACCGAAGGGATGATCAAGTCTGTGAATGAAACGTCAAAATCCAGATGTGTTGAGTCGGAAGAACATTCTGTTGCTTCCAGTGAGTTGACAGAATCAGAACCAGATGATACTGAAATTCAGTCGCCAAATGTCATCTTGAGAGGGGCCACAAAAGCTGGATCTGAGAAAAGCAACATGAAAGATAAAAAGAGTCACGTCCCTGCATCTTCAAGAAGAAACATCAGGTCAAAGAAAAGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1335

Amino Acids

148.58

Weight (kDa)

5.72

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd1_N PF12922 81 - 243 2.2e-36 non-SMC mitotic condensation complex subunit 1, N-term
Cnd1 PF12717 981 - 1141 2.7e-50 non-SMC mitotic condensation complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1005, 1898
Acc36I ACCTGC 2 cut(s) 241, 3240
AccB1I GGYRCC 2 cut(s) 1743, 1955
AccB7I CCANNNNNTGG 2 cut(s) 989, 1589
AccBSI CCGCTC 1 cut(s) 1138
AccI GTMKAC 1 cut(s) 229
AccIII TCCGGA 2 cut(s) 2824, 3238
AciI CCGC 8 cut(s) 64, 268, 520, 794, 1138, 1883, 2554, 2676
AclWI GGATC 5 cut(s) 360, 3035, 3048, 3755, 3934
AcoI YGGCCR 3 cut(s) 1884, 2143, 3135
AcuI CTGAAG 5 cut(s) 1263, 2180, 2229, 2703, 3030
AfaI GTAC 5 cut(s) 203, 469, 651, 1382, 3769
AflIII ACRYGT 1 cut(s) 3484
AjiI CACGTC 1 cut(s) 3964
AjnI CCWGG 2 cut(s) 470, 3029
AjuI GAANNNNNNNTTGG 6 cut(s) 286, 318, 1905, 1937, 3056, 3088
AleI CACNNNNGTG 2 cut(s) 344, 2918
Alw21I GWGCWC 3 cut(s) 2062, 2776, 2932
Alw44I GTGCAC 2 cut(s) 2772, 2928
AlwI GGATC 5 cut(s) 360, 3035, 3048, 3755, 3934
AlwNI CAGNNNCTG 1 cut(s) 3053
Aor13HI TCCGGA 2 cut(s) 2824, 3238
AoxI GGCC 9 cut(s) 517, 583, 696, 970, 1884, 2143, 2668, 3135, 3912
ApaLI GTGCAC 2 cut(s) 2772, 2928
ArsI GACNNNNNNTTYG 6 cut(s) 111, 143, 941, 973, 1597, 1629
Asp700I GAANNNNTTC 3 cut(s) 1354, 2038, 3602
AspS9I GGNCC 7 cut(s) 270, 517, 575, 696, 1337, 3511, 3912
AsuC2I CCSGG 2 cut(s) 1165, 2249
AsuHPI GGTGA 4 cut(s) 469, 1085, 2435, 3761
AsuII TTCGAA 2 cut(s) 1102, 1348
AvaII GGWCC 4 cut(s) 270, 575, 1337, 3511
BaeGI GKGCMC 2 cut(s) 2776, 2932
BalI TGGCCA 1 cut(s) 3137
BamHI GGATCC 1 cut(s) 3040
BanI GGYRCC 2 cut(s) 1743, 1955
BarI GAAGNNNNNNTAC 4 cut(s) 1356, 1388, 2676, 2708
BbsI GAAGAC 4 cut(s) 63, 309, 1091, 1772
Bbv12I GWGCWC 3 cut(s) 2062, 2776, 2932
BccI CCATC 9 cut(s) 818, 1453, 1540, 1565, 1684, 1829, 2941, 3502, 3740
BceAI ACGGC 1 cut(s) 2130
BciT130I CCWGG 2 cut(s) 472, 3031
BciVI GTATCC 2 cut(s) 883, 2832
BclI TGATCA 1 cut(s) 3780
BcnI CCSGG 2 cut(s) 1165, 2249
BfmI CTRYAG 4 cut(s) 645, 1491, 2097, 3035
BfuAI ACCTGC 2 cut(s) 241, 3240
BfuI GTATCC 2 cut(s) 883, 2832
BglII AGATCT 3 cut(s) 1555, 1927, 2399
BlpI GCTNAGC 3 cut(s) 832, 2661, 3180
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 4 cut(s) 472, 1165, 2249, 3031
Bme18I GGWCC 4 cut(s) 270, 575, 1337, 3511
BmgBI CACGTC 1 cut(s) 3964
BmgT120I GGNCC 7 cut(s) 270, 517, 575, 696, 1337, 3511, 3912
BmrFI CCNGG 4 cut(s) 472, 1165, 2249, 3031
BmrI ACTGGG 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 4 cut(s) 63, 309, 1091, 1772
BpmI CTGGAG 2 cut(s) 569, 2885
Bpu1102I GCTNAGC 3 cut(s) 832, 2661, 3180
Bpu14I TTCGAA 2 cut(s) 1102, 1348
BpuEI CTTGAG 6 cut(s) 306, 1154, 1649, 1961, 3257, 3925
BpuMI CCSGG 2 cut(s) 1165, 2249
BsaBI GATNNNNATC 1 cut(s) 1444
BsaJI CCNNGG 4 cut(s) 1503, 1959, 2745, 3008
BsaWI WCCGGW 4 cut(s) 343, 2359, 2824, 3238
Bse1I ACTGG 7 cut(s) 213, 506, 552, 715, 1803, 2284, 3846
Bse3DI GCAATG 5 cut(s) 563, 783, 1284, 2628, 2850
Bse8I GATNNNNATC 1 cut(s) 1444
BseAI TCCGGA 2 cut(s) 2824, 3238
BseBI CCWGG 2 cut(s) 472, 3031
BseDI CCNNGG 4 cut(s) 1503, 1959, 2745, 3008
BseGI GGATG 5 cut(s) 337, 1576, 2090, 2350, 3783
BseJI GATNNNNATC 1 cut(s) 1444
BseMI GCAATG 5 cut(s) 563, 783, 1284, 2628, 2850
BseNI ACTGG 7 cut(s) 213, 506, 552, 715, 1803, 2284, 3846
BseRI GAGGAG 4 cut(s) 278, 437, 2441, 3593
BseSI GKGCMC 2 cut(s) 2776, 2932
BseYI CCCAGC 2 cut(s) 800, 1253
BsgI GTGCAG 1 cut(s) 1529
BshFI GGCC 9 cut(s) 519, 585, 698, 972, 1886, 2145, 2670, 3137, 3914
BshNI GGYRCC 2 cut(s) 1743, 1955
BsiHKAI GWGCWC 3 cut(s) 2062, 2776, 2932
BsiSI CCGG 6 cut(s) 344, 1165, 2248, 2360, 2825, 3239
BslFI GGGAC 4 cut(s) 90, 965, 1565, 3950
BsmFI GGGAC 4 cut(s) 90, 965, 1565, 3950
BsmI GAATGC 3 cut(s) 1021, 3431, 3706
BsnI GGCC 9 cut(s) 519, 585, 698, 972, 1886, 2145, 2670, 3137, 3914
Bsp119I TTCGAA 2 cut(s) 1102, 1348
Bsp1286I GDGCHC 3 cut(s) 2062, 2776, 2932
Bsp13I TCCGGA 2 cut(s) 2824, 3238
Bsp1720I GCTNAGC 3 cut(s) 832, 2661, 3180
Bsp19I CCATGG 1 cut(s) 3008
BspACI CCGC 8 cut(s) 64, 268, 520, 794, 1138, 1883, 2554, 2676
BspANI GGCC 9 cut(s) 519, 585, 698, 972, 1886, 2145, 2670, 3137, 3914
BspEI TCCGGA 2 cut(s) 2824, 3238
BspHI TCATGA 1 cut(s) 1311
BspMAI CTGCAG 2 cut(s) 1495, 2101
BspMI ACCTGC 2 cut(s) 241, 3240
BspPI GGATC 5 cut(s) 360, 3035, 3048, 3755, 3934
BspQI GCTCTTC 2 cut(s) 171, 2199
BspT104I TTCGAA 2 cut(s) 1102, 1348
BspT107I GGYRCC 2 cut(s) 1743, 1955
BsrBI CCGCTC 1 cut(s) 1138
BsrDI GCAATG 5 cut(s) 563, 783, 1284, 2628, 2850
BsrI ACTGG 7 cut(s) 213, 506, 552, 715, 1803, 2284, 3846
BssECI CCNNGG 4 cut(s) 1503, 1959, 2745, 3008
BssT1I CCWWGG 3 cut(s) 1503, 1959, 3008
Bst2UI CCWGG 2 cut(s) 472, 3031
Bst6I CTCTTC 6 cut(s) 39, 105, 114, 171, 2199, 2915
BstAPI GCANNNNNTGC 3 cut(s) 2189, 2849, 3644
BstBI TTCGAA 2 cut(s) 1102, 1348
BstDSI CCRYGG 2 cut(s) 2745, 3008
BstEII GGTNACC 1 cut(s) 942
BstENI CCTNNNNNAGG 2 cut(s) 2555, 3494
BstF5I GGATG 5 cut(s) 337, 1576, 2090, 2350, 3783
BstNI CCWGG 2 cut(s) 472, 3031
BstNSI RCATGY 5 cut(s) 1779, 2187, 2612, 2883, 3488
BstPI GGTNACC 1 cut(s) 942
BstSCI CCNGG 4 cut(s) 470, 1163, 2247, 3029
BstSFI CTRYAG 4 cut(s) 645, 1491, 2097, 3035
BstSLI GKGCMC 2 cut(s) 2776, 2932
BstV2I GAAGAC 4 cut(s) 63, 309, 1091, 1772
BstX2I RGATCY 5 cut(s) 1555, 1927, 2399, 3040, 3926
BstYI RGATCY 5 cut(s) 1555, 1927, 2399, 3040, 3926
BsuI GTATCC 2 cut(s) 883, 2832
BsuRI GGCC 9 cut(s) 519, 585, 698, 972, 1886, 2145, 2670, 3137, 3914
BtgI CCRYGG 2 cut(s) 2745, 3008
BtgZI GCGATG 1 cut(s) 76
BtrI CACGTC 1 cut(s) 3964
BtsCI GGATG 5 cut(s) 337, 1576, 2090, 2350, 3783
BtsI GCAGTG 1 cut(s) 2455
BtsIMutI CAGTG 9 cut(s) 206, 545, 1707, 1796, 2060, 2455, 3379, 3435, 3853
BveI ACCTGC 2 cut(s) 241, 3240
CaiI CAGNNNCTG 1 cut(s) 3053
CciI TCATGA 1 cut(s) 1311
Cfr13I GGNCC 7 cut(s) 270, 517, 575, 696, 1337, 3511, 3912
CseI GACGC 1 cut(s) 726
Csp6I GTAC 5 cut(s) 202, 468, 650, 1381, 3768
CspCI CAANNNNNGTGG 4 cut(s) 1696, 1731, 2011, 2046
CviQI GTAC 5 cut(s) 202, 468, 650, 1381, 3768
DraI TTTAAA 2 cut(s) 381, 1060
EaeI YGGCCR 3 cut(s) 1884, 2143, 3135
Eam1104I CTCTTC 6 cut(s) 39, 105, 114, 171, 2199, 2915
EarI CTCTTC 6 cut(s) 39, 105, 114, 171, 2199, 2915
Eco130I CCWWGG 3 cut(s) 1503, 1959, 3008
Eco147I AGGCCT 1 cut(s) 585
Eco32I GATATC 3 cut(s) 1995, 2495, 3388
Eco47I GGWCC 4 cut(s) 270, 575, 1337, 3511
Eco57I CTGAAG 5 cut(s) 1263, 2180, 2229, 2703, 3030
Eco91I GGTNACC 1 cut(s) 942
EcoNI CCTNNNNNAGG 2 cut(s) 2555, 3494
EcoO109I RGGNCCY 1 cut(s) 696
EcoO65I GGTNACC 1 cut(s) 942
EcoRI GAATTC 2 cut(s) 490, 1081
EcoRII CCWGG 2 cut(s) 470, 3029
EcoRV GATATC 3 cut(s) 1995, 2495, 3388
EcoT14I CCWWGG 3 cut(s) 1503, 1959, 3008
EcoT22I ATGCAT 3 cut(s) 625, 750, 2881
ErhI CCWWGG 3 cut(s) 1503, 1959, 3008
FalI AAGNNNNNCTT 6 cut(s) 1764, 1796, 2236, 2268, 3593, 3625
FaqI GGGAC 4 cut(s) 90, 965, 1565, 3950
FauNDI CATATG 2 cut(s) 2303, 3478
FbaI TGATCA 1 cut(s) 3780
FblI GTMKAC 1 cut(s) 229
FokI GGATG 5 cut(s) 344, 1583, 2077, 2337, 3790
GsaI CCCAGC 2 cut(s) 804, 1257
GsuI CTGGAG 2 cut(s) 569, 2885
HaeIII GGCC 9 cut(s) 519, 585, 698, 972, 1886, 2145, 2670, 3137, 3914
HapII CCGG 6 cut(s) 344, 1165, 2248, 2360, 2825, 3239
HgaI GACGC 1 cut(s) 726
HincII GTYRAC 4 cut(s) 430, 964, 1500, 3855
HindII GTYRAC 4 cut(s) 430, 964, 1500, 3855
HindIII AAGCTT 4 cut(s) 557, 829, 2269, 3455
HpaI GTTAAC 2 cut(s) 430, 964
HpaII CCGG 6 cut(s) 344, 1165, 2248, 2360, 2825, 3239
HphI GGTGA 4 cut(s) 469, 1085, 2435, 3761
Hpy99I CGWCG 2 cut(s) 13, 742
HpyAV CCTTC 9 cut(s) 983, 1561, 1855, 2551, 3054, 3103, 3319, 3731, 3767
HpyCH4IV ACGT 3 cut(s) 1713, 3800, 3963
HpySE526I ACGT 3 cut(s) 1713, 3800, 3963
Kpn2I TCCGGA 2 cut(s) 2824, 3238
Ksp22I TGATCA 1 cut(s) 3780
KspAI GTTAAC 2 cut(s) 430, 964
LguI GCTCTTC 2 cut(s) 171, 2199
LmnI GCTCC 2 cut(s) 10, 2057
MaeII ACGT 3 cut(s) 1713, 3800, 3963
MbiI CCGCTC 1 cut(s) 1138
MfeI CAATTG 3 cut(s) 1218, 1685, 2953
MflI RGATCY 5 cut(s) 1555, 1927, 2399, 3040, 3926
MhlI GDGCHC 3 cut(s) 2062, 2776, 2932
MlsI TGGCCA 1 cut(s) 3137
MluNI TGGCCA 1 cut(s) 3137
MlyI GAGTC 5 cut(s) 653, 1177, 3473, 3830, 3967
MmeI TCCRAC 7 cut(s) 21, 465, 602, 1101, 2378, 3285, 3804
Mox20I TGGCCA 1 cut(s) 3137
Mph1103I ATGCAT 3 cut(s) 625, 750, 2881
MroI TCCGGA 2 cut(s) 2824, 3238
MroXI GAANNNNTTC 3 cut(s) 1354, 2038, 3602
MscI TGGCCA 1 cut(s) 3137
MslI CAYNNNNRTG 7 cut(s) 344, 372, 730, 762, 990, 2613, 2918
Msp20I TGGCCA 1 cut(s) 3137
MspA1I CMGCKG 1 cut(s) 2630
MspI CCGG 6 cut(s) 344, 1165, 2248, 2360, 2825, 3239
MspR9I CCNGG 4 cut(s) 472, 1165, 2249, 3031
MunI CAATTG 3 cut(s) 1218, 1685, 2953
Mva1269I GAATGC 3 cut(s) 1021, 3431, 3706
MvaI CCWGG 2 cut(s) 472, 3031
NciI CCSGG 2 cut(s) 1165, 2249
NcoI CCATGG 1 cut(s) 3008
NdeI CATATG 2 cut(s) 2303, 3478
NmuCI GTSAC 4 cut(s) 457, 723, 2888, 3959
NsiI ATGCAT 3 cut(s) 625, 750, 2881
NspI RCATGY 5 cut(s) 1779, 2187, 2612, 2883, 3488
NspV TTCGAA 2 cut(s) 1102, 1348
OliI CACNNNNGTG 2 cut(s) 344, 2918
PaeI GCATGC 2 cut(s) 2187, 2612
PagI TCATGA 1 cut(s) 1311
PceI AGGCCT 1 cut(s) 585
PciI ACATGT 1 cut(s) 3484
PciSI GCTCTTC 2 cut(s) 171, 2199
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 3 cut(s) 1021, 3431, 3706
PdmI GAANNNNTTC 3 cut(s) 1354, 2038, 3602
PflMI CCANNNNNTGG 2 cut(s) 989, 1589
PleI GAGTC 5 cut(s) 653, 1176, 3472, 3829, 3966
PpsI GAGTC 5 cut(s) 653, 1176, 3472, 3829, 3966
PscI ACATGT 1 cut(s) 3484
PsiI TTATAA 2 cut(s) 1005, 1898
Psp6I CCWGG 2 cut(s) 470, 3029
PspEI GGTNACC 1 cut(s) 942
PspFI CCCAGC 2 cut(s) 800, 1253
PspGI CCWGG 2 cut(s) 470, 3029
PspPI GGNCC 7 cut(s) 270, 517, 575, 696, 1337, 3511, 3912
PstI CTGCAG 2 cut(s) 1495, 2101
PstNI CAGNNNCTG 1 cut(s) 3053
PsuI RGATCY 5 cut(s) 1555, 1927, 2399, 3040, 3926
PvuII CAGCTG 1 cut(s) 2630
RsaI GTAC 5 cut(s) 203, 469, 651, 1382, 3769
RsaNI GTAC 5 cut(s) 202, 468, 650, 1381, 3768
RseI CAYNNNNRTG 7 cut(s) 344, 372, 730, 762, 990, 2613, 2918
SapI GCTCTTC 2 cut(s) 171, 2199
Sau96I GGNCC 7 cut(s) 270, 517, 575, 696, 1337, 3511, 3912
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 5 cut(s) 653, 1177, 3473, 3830, 3967
ScrFI CCNGG 4 cut(s) 472, 1165, 2249, 3031
SduI GDGCHC 3 cut(s) 2062, 2776, 2932
SfcI CTRYAG 4 cut(s) 645, 1491, 2097, 3035
SfuI TTCGAA 2 cut(s) 1102, 1348
SinI GGWCC 4 cut(s) 270, 575, 1337, 3511
SmiMI CAYNNNNRTG 7 cut(s) 344, 372, 730, 762, 990, 2613, 2918
SmlI CTYRAG 6 cut(s) 321, 1133, 1628, 1940, 3272, 3904
SmoI CTYRAG 6 cut(s) 321, 1133, 1628, 1940, 3272, 3904
SphI GCATGC 2 cut(s) 2187, 2612
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 8 cut(s) 64, 268, 520, 794, 1138, 1883, 2554, 2676
SspI AATATT 1 cut(s) 1921
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 4 cut(s) 470, 1163, 2247, 3029
StyI CCWWGG 3 cut(s) 1503, 1959, 3008
TaiI ACGT 3 cut(s) 1716, 3803, 3966
TaqI TCGA 7 cut(s) 87, 117, 740, 1102, 1144, 1348, 2541
TatI WGTACW 3 cut(s) 201, 649, 1380
TauI GCSGC 2 cut(s) 522, 1886
TscAI CASTG 9 cut(s) 213, 552, 1714, 1803, 2067, 2455, 3379, 3442, 3853
TseFI GTSAC 4 cut(s) 457, 723, 2888, 3959
Tsp45I GTSAC 4 cut(s) 457, 723, 2888, 3959
TspGWI ACGGA 3 cut(s) 66, 2762, 2936
TspRI CASTG 9 cut(s) 213, 552, 1714, 1803, 2067, 2455, 3379, 3442, 3853
Van91I CCANNNNNTGG 2 cut(s) 989, 1589
VneI GTGCAC 2 cut(s) 2772, 2928
VpaK11BI GGWCC 4 cut(s) 270, 575, 1337, 3511
XagI CCTNNNNNAGG 2 cut(s) 2555, 3494
XceI RCATGY 5 cut(s) 1779, 2187, 2612, 2883, 3488
XcmI CCANNNNNNNNNTGG 2 cut(s) 346, 2301
XmiI GTMKAC 1 cut(s) 229
XmnI GAANNNNTTC 3 cut(s) 1354, 2038, 3602
ZrmI AGTACT 1 cut(s) 651
Zsp2I ATGCAT 3 cut(s) 625, 750, 2881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.