Rorug02G0255700

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007785
Physical Location & Seq
Reverse (-)
26752234 .. 26752791
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0255700.1

Sequence Viewer

Length: 558 bp
ATGGCCAAGTACCTTTCAGCTAGTATTCTACTTCTTGCGGCTCTAGTTTGTGTTTCAGGATTTGCACAAAACAATGGTCATGATACTCACAAAGGTATTTGCAAATCTCTTGTGGAGACACGAGGCTATATTTGCGAAGAACATCAAGTAACAACAGAAGATAGTTACATTCTCGGGTTGCAGAGAATTCCATCTGGACGGTTTGGTAAAAATTCGACCACATCTCAGAAGCCTCCTGTTTTGTTGCAACATGGGCTTCTAACGGATGCTACATCATGGCTACTCAATCCACCGGACCAGGCTTTGGCGTTCATCTTGGCTGACAAAGGGTTTGATGTATGGCTTGCTAATTCTCGAGGAACGGACTCTAGCCGTGGACACAAATCACTTGCTACTAAGGATCCTGCTTATTGGGACTGGACATGGGAACAGTCGGCTGCTTATGATCTTCCTGCTTTGTTAAATTATGTGAACAAGCAAACAGGACAGAGGTCACACTATGTTGGCCATTCCTTAGCCCAATTGCTTATCTGGGTCACATATCCAGCCCGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd1 Cnd1_N Cohesin_HEAT

Protein Analysis

185

Amino Acids

20.53

Weight (kDa)

7.77

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 96 1.4e-20 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 78 - 172 2e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 304
AciI CCGC 2 cut(s) 38, 550
AclWI GGATC 2 cut(s) 395, 408
AcoI YGGCCR 2 cut(s) 3, 505
AcsI RAATTY 2 cut(s) 186, 211
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 304
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 2 cut(s) 395, 408
Ama87I CYCGRG 2 cut(s) 173, 354
AoxI GGCC 2 cut(s) 3, 505
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 186, 211
ArsI GACNNNNNNTTYG 4 cut(s) 61, 93, 314, 346
AspS9I GGNCC 1 cut(s) 295
AvaI CYCGRG 2 cut(s) 173, 354
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 2 cut(s) 5, 507
BamHI GGATCC 1 cut(s) 400
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 3 cut(s) 21, 44, 369
BisI GCNGC 2 cut(s) 39, 438
BlsI GCNGC 2 cut(s) 40, 439
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 173, 354
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 490
Bpu10I CCTNAGC 1 cut(s) 514
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 424
BshFI GGCC 2 cut(s) 5, 507
BsiHKCI CYCGRG 2 cut(s) 173, 354
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 2 cut(s) 5, 507
BsoBI CYCGRG 2 cut(s) 173, 354
Bsp143I GATC 2 cut(s) 400, 445
BspACI CCGC 2 cut(s) 38, 550
BspANI GGCC 2 cut(s) 5, 507
BspCNI CTCAG 1 cut(s) 238
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 395, 408
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 2 cut(s) 400, 445
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 201, 432
BstC8I GCNNGC 2 cut(s) 345, 550
BstDEI CTNAG 3 cut(s) 225, 396, 514
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 403, 448
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 400, 445
BstMWI GCNNNNNNNGC 2 cut(s) 132, 253
BstNI CCWGG 1 cut(s) 299
BstPAI GACNNNNGTC 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 2 cut(s) 5, 507
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 345, 550
CciI TCATGA 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 10
CviAII CATG 4 cut(s) 80, 251, 276, 423
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 3 cut(s) 225, 396, 514
DpnI GATC 2 cut(s) 402, 447
DpnII GATC 2 cut(s) 400, 445
EaeI YGGCCR 2 cut(s) 3, 505
Eco47I GGWCC 1 cut(s) 295
Eco88I CYCGRG 2 cut(s) 173, 354
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 297
FaeI CATG 4 cut(s) 83, 254, 279, 426
FaqI GGGAC 1 cut(s) 428
FatI CATG 4 cut(s) 79, 250, 275, 422
Fnu4HI GCNGC 2 cut(s) 39, 438
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 39, 438
FspBI CTAG 3 cut(s) 21, 44, 369
GluI GCNGC 2 cut(s) 39, 438
HaeIII GGCC 2 cut(s) 5, 507
HapII CCGG 1 cut(s) 293
Hin1II CATG 4 cut(s) 83, 254, 279, 426
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 377, 472
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 4 cut(s) 57, 80, 195, 354
Hpy8I GTNNAC 2 cut(s) 377, 472
HpyCH4III ACNGT 2 cut(s) 201, 432
HpyCH4V TGCA 4 cut(s) 65, 102, 181, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 253
HpyF3I CTNAG 3 cut(s) 225, 396, 514
Hsp92II CATG 4 cut(s) 83, 254, 279, 426
Kzo9I GATC 2 cut(s) 400, 445
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 256
MaeI CTAG 3 cut(s) 21, 44, 369
MaeIII GTNAC 4 cut(s) 148, 164, 492, 535
MalI GATC 2 cut(s) 402, 447
MboI GATC 2 cut(s) 400, 445
MboII GAAGA 3 cut(s) 149, 170, 440
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 1 cut(s) 400
MlsI TGGCCA 2 cut(s) 5, 507
MluCI AATT 5 cut(s) 186, 211, 349, 463, 521
MluNI TGGCCA 2 cut(s) 5, 507
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 4 cut(s) 116, 243, 350, 483
Mox20I TGGCCA 2 cut(s) 5, 507
MscI TGGCCA 2 cut(s) 5, 507
MseI TTAA 2 cut(s) 461, 556
Msp20I TGGCCA 2 cut(s) 5, 507
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 521
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 132, 253
NdeII GATC 2 cut(s) 400, 445
NlaIII CATG 4 cut(s) 83, 254, 279, 426
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 2 cut(s) 492, 535
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 2 cut(s) 40, 439
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PshAI GACNNNNGTC 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 461, 556
SatI GCNGC 2 cut(s) 39, 438
Sau3AI GATC 2 cut(s) 400, 445
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 299
SetI ASST 4 cut(s) 15, 22, 97, 494
SfaNI GCATC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 5 cut(s) 186, 211, 349, 463, 521
SsiI CCGC 2 cut(s) 38, 550
SspMI CTAG 3 cut(s) 21, 44, 369
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 201, 432
TaqI TCGA 2 cut(s) 215, 355
TasI AATT 5 cut(s) 186, 211, 349, 463, 521
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 461, 556
Tru9I TTAA 2 cut(s) 461, 556
TseFI GTSAC 2 cut(s) 492, 535
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 2 cut(s) 492, 535
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 2 cut(s) 278, 377
Van91I CCANNNNNTGG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 186, 211
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 3 cut(s) 21, 44, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.