Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007785

Physical Location & Seq

Genomic Coordinates Reverse (-)

26761731 .. 26763022

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAAGATCCAAAAACAACAATGGGGAGTGGAAGAACACTTTCCTGAAGAAATCATAGACAAAATCCTGTTGAAATTGCCCGTCAAAGACGTAATCAGATGCAGCGCCGTGTGCAAGTTATGGAACTCTCTCATTAAAAACCCTACCTTCATTCAAACCCACCTCAAGAATCAAACCCACGACGGCATTTCGAAGCGCCTCCTGCTCATCTCCCGCCAATCATACGATTTGCATTGGGATAACCCTGCAGCTTTATTCGGTCAGTATTCCAACCTCCGAAATCCAATTCGCAACAGTAATTGGACCAAAGGTATCGTTTGGGAAGTGGTCGGAACTTGTAACGGACTTGTATGCCTTGCTGTTTCCTCAATTCACGGTGACCCCTGCCCTCCTGTGATTCTCTGGAATCCATCCATTAGAAAGTTTGGGTTTTTGCCTAGTCCCAGTCGTGCCGTTGATTGCTACCGGTATGAAAGTTATTATCTCTGCTATGATTCTCGTATAGATGATTATAAGGTTGTGAGAATTGTCAGGGAACCACCCTATTGCCAGGTTGAGGTTGAGGTTTGGTCCTTAGCCTCAGGAAGTGCTTGGAAGAGTCTTGATAATGTTCCTGCCGATTTTTCCCCTTGTACATCTCATCATGCTTTTGTCAACGGCGCTCTTCACTGGGCTCAGAGCCGCCTGACAAGGGGAGAGGGGGAGGAGGAGGAGTCTACTGTTTCCGTTGTGGCATTGGACATGGTTGATGGATCATTTCGCAATGTGGAGATTCTCCAAGGCTGGAGAGGTGCACCAATGATTTCAAGGTACCATGGTGATGGGGATCAGTGCTGGCTTGCGTTATTTGAGTTGCAGGGAGACTCTTGTTTTGACTTGTGGGTGATGAAAGAGTACGGTGTGGCTGAATCATGGACTAAATTATTCAATGTGCATCTGCTAGGATCTCCGGAAGAAGAACTTCGGATCGAGCCATTTGGTTTTACAAAGAGTGGTCAGGTGGTGGTCAGAATGGGTCGGGACGAAGAGTTCAATTCGTTCAAGTCTTATGACCCCAAGGACAAACAGTTTAGAGATTTTGGAAATCAGGCATATGACTACTACTTCATGGATTCTTTCGTGGAGAGCCTTGTCTTACTTGGCCAAACCAATGTTTTTTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd1 Cnd1_N Cohesin_HEAT

Protein Analysis

388

Amino Acids

44.58

Weight (kDa)

5.53

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 50	1.1e-10	F-box domain
F-box-like	PF12937	15 - 49	2.1e-08	F-box-like
FBA_3	PF08268	107 - 363	6.8e-17	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57060 AT3G57060 AT3G57060
fragaria_vesca	FvH4_6g25220 FvH4_6g25220 FvH4_6g25220
malus_domestica	MD14G1099800.v1.1
prunus_persica	Prupe.7G042500_v2.0.a1 Prupe.7G042500_v2.0.a1 Prupe.7G042500_v2.0.a1
pyrus_communis	pycom14g07630
rosa_chinensis	RchiOBHm_Chr2g0125151
rosa_laevigata	RLG00000018850
rosa_multiflora	Rmu_sc0003505.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118240 Rroxscaffold_2G00118700
rosa_rugosa	Rorug02G0255700 Rorug02G0255800 Rorug02G0255900
rosa_samantha	Rh2AG314200 Rh2BG322400 Rh2CG304600 Rh2DG340800
rosa_wichuraiana	Rw2G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc65I	GGTACC	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	810
AccI	GTMKAC	1 cut(s)	716
AccIII	TCCGGA	1 cut(s)	949
AciI	CCGC	2 cut(s)	214, 682
AclWI	GGATC	4 cut(s)	760, 834, 952, 974
AcoI	YGGCCR	1 cut(s)	1141
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	3 cut(s)	634, 812, 896
AfiI	CCNNNNNNNGG	2 cut(s)	556, 691
AgeI	ACCGGT	1 cut(s)	465
AgsI	TTSAA	6 cut(s)	73, 155, 807, 928, 1033, 1042
AjnI	CCWGG	1 cut(s)	549
AloI	GAACNNNNNNTCC	2 cut(s)	1013, 1045
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	796
Alw26I	GTCTC	1 cut(s)	855
Alw44I	GTGCAC	1 cut(s)	792
AlwI	GGATC	4 cut(s)	760, 834, 952, 974
Aor13HI	TCCGGA	1 cut(s)	949
AoxI	GGCC	1 cut(s)	1141
ApaLI	GTGCAC	1 cut(s)	792
ApeKI	GCWGC	2 cut(s)	102, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AsiGI	ACCGGT	1 cut(s)	465
Asp700I	GAANNNNTTC	2 cut(s)	39, 960
Asp718I	GGTACC	1 cut(s)	810
AspLEI	GCGC	3 cut(s)	107, 198, 662
AspS9I	GGNCC	2 cut(s)	303, 570
AsuHPI	GGTGA	3 cut(s)	389, 830, 895
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	303, 570
AxyI	CCTNAGG	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	796
BaeI	ACNNNNGTAYC	2 cut(s)	802, 835
BalI	TGGCCA	1 cut(s)	1143
BanI	GGYRCC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	676
Bbv12I	GWGCWC	1 cut(s)	796
BbvI	GCAGC	2 cut(s)	114, 260
BccI	CCATC	3 cut(s)	418, 743, 815
BceAI	ACGGC	4 cut(s)	92, 199, 437, 673
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	2 cut(s)	438, 941
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	3 cut(s)	108, 199, 663
BisI	GCNGC	3 cut(s)	103, 249, 682
BlsI	GCNGC	3 cut(s)	104, 250, 683
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	2 cut(s)	303, 570
BmgT120I	GGNCC	2 cut(s)	303, 570
BmiI	GGNNCC	2 cut(s)	537, 812
BmrFI	CCNGG	1 cut(s)	551
BmrI	ACTGGG	2 cut(s)	438, 679
BmsI	GCATC	2 cut(s)	89, 943
BmuI	ACTGGG	2 cut(s)	438, 679
BpmI	CTGGAG	1 cut(s)	805
Bpu10I	CCTNAGC	1 cut(s)	574
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	825
BsaJI	CCNNGG	3 cut(s)	778, 814, 1056
BsaWI	WCCGGW	2 cut(s)	465, 949
BsaXI	ACNNNNNCTCC	2 cut(s)	698, 728
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 691
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	444, 674
Bse21I	CCTNAGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	769
Bse8I	GATNNNNATC	1 cut(s)	825
BseAI	TCCGGA	1 cut(s)	949
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	778, 814, 1056
BseGI	GGATG	1 cut(s)	410
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	2 cut(s)	556, 691
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	2 cut(s)	594, 689
BseNI	ACTGG	2 cut(s)	444, 674
BseRI	GAGGAG	3 cut(s)	719, 722, 725
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	2 cut(s)	114, 260
BshFI	GGCC	1 cut(s)	1143
BshNI	GGYRCC	1 cut(s)	810
BshTI	ACCGGT	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	796
BsiSI	CCGG	2 cut(s)	466, 950
BslFI	GGGAC	2 cut(s)	426, 1034
BslI	CCNNNNNNNGG	2 cut(s)	556, 691
BsmAI	GTCTC	1 cut(s)	855
BsmFI	GGGAC	2 cut(s)	426, 1034
BsnI	GGCC	1 cut(s)	1143
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	676, 796
Bsp13I	TCCGGA	1 cut(s)	949
Bsp1407I	TGTACA	1 cut(s)	632
Bsp143I	GATC	5 cut(s)	6, 752, 826, 944, 966
Bsp19I	CCATGG	1 cut(s)	814
BspACI	CCGC	2 cut(s)	214, 682
BspANI	GGCC	1 cut(s)	1143
BspCNI	CTCAG	2 cut(s)	593, 688
BspEI	TCCGGA	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	537, 812
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	4 cut(s)	760, 834, 952, 974
BspQI	GCTCTTC	1 cut(s)	669
BspT104I	TTCGAA	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	810
BsrDI	GCAATG	1 cut(s)	769
BsrFI	RCCGGY	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	444, 674
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	3 cut(s)	778, 814, 1056
BssMI	GATC	5 cut(s)	6, 752, 826, 944, 966
BssT1I	CCWWGG	3 cut(s)	778, 814, 1056
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	5 cut(s)	296, 377, 721, 899, 1068
Bst6I	CTCTTC	3 cut(s)	590, 669, 1020
BstAUI	TGTACA	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	836, 840
BstDEI	CTNAG	3 cut(s)	574, 580, 675
BstDSI	CCRYGG	1 cut(s)	814
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	410
BstH2I	RGCGCY	3 cut(s)	108, 199, 663
BstHHI	GCGC	3 cut(s)	107, 198, 662
BstKTI	GATC	5 cut(s)	9, 755, 829, 947, 969
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	5 cut(s)	6, 752, 826, 944, 966
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 202
BstNI	CCWGG	1 cut(s)	551
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	2 cut(s)	114, 260
BstX2I	RGATCY	2 cut(s)	6, 944
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	2 cut(s)	6, 944
Bsu36I	CCTNAGG	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	1143
BtgI	CCRYGG	1 cut(s)	814
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	667, 836
Cac8I	GCNNGC	2 cut(s)	836, 840
CfoI	GCGC	3 cut(s)	107, 198, 662
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	303, 570
Csp6I	GTAC	3 cut(s)	633, 811, 895
CspAI	ACCGGT	1 cut(s)	465
CviAII	CATG	5 cut(s)	644, 742, 815, 912, 1108
CviQI	GTAC	3 cut(s)	633, 811, 895
DdeI	CTNAG	3 cut(s)	574, 580, 675
DpnI	GATC	5 cut(s)	8, 754, 828, 946, 968
DpnII	GATC	5 cut(s)	6, 752, 826, 944, 966
EaeI	YGGCCR	1 cut(s)	1141
Eam1104I	CTCTTC	3 cut(s)	590, 669, 1020
EarI	CTCTTC	3 cut(s)	590, 669, 1020
Eco130I	CCWWGG	3 cut(s)	778, 814, 1056
Eco24I	GRGCYC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	303, 570
Eco57I	CTGAAG	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	580
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	3 cut(s)	778, 814, 1056
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	3 cut(s)	778, 814, 1056
FaeI	CATG	5 cut(s)	647, 745, 818, 915, 1111
FalI	AAGNNNNNCTT	2 cut(s)	945, 977
FaqI	GGGAC	2 cut(s)	426, 1034
FatI	CATG	5 cut(s)	643, 741, 814, 911, 1107
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	1093
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	3 cut(s)	103, 249, 682
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	3 cut(s)	103, 249, 682
FspBI	CTAG	2 cut(s)	438, 941
GlaI	GCGC	3 cut(s)	106, 197, 661
GluI	GCNGC	3 cut(s)	103, 249, 682
GsuI	CTGGAG	1 cut(s)	805
HaeII	RGCGCY	3 cut(s)	108, 199, 663
HaeIII	GGCC	1 cut(s)	1143
HapII	CCGG	2 cut(s)	466, 950
HhaI	GCGC	3 cut(s)	107, 198, 662
Hin1II	CATG	5 cut(s)	647, 745, 818, 915, 1111
Hin6I	GCGC	3 cut(s)	105, 196, 660
HinP1I	GCGC	3 cut(s)	105, 196, 660
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HpaII	CCGG	2 cut(s)	466, 950
HphI	GGTGA	3 cut(s)	389, 830, 895
Hpy166II	GTNNAC	3 cut(s)	655, 717, 794
Hpy188I	TCNGA	6 cut(s)	98, 278, 332, 678, 966, 1010
Hpy188III	TCNNGA	7 cut(s)	44, 166, 403, 582, 602, 950, 1019
Hpy8I	GTNNAC	3 cut(s)	655, 717, 794
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	5 cut(s)	296, 377, 721, 899, 1068
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	7 cut(s)	102, 114, 232, 248, 794, 856, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 202
HpyF3I	CTNAG	3 cut(s)	574, 580, 675
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	647, 745, 818, 915, 1111
HspAI	GCGC	3 cut(s)	105, 196, 660
Kpn2I	TCCGGA	1 cut(s)	949
KpnI	GGTACC	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	6, 752, 826, 944, 966
LguI	GCTCTTC	1 cut(s)	669
Lsp1109I	GCAGC	2 cut(s)	114, 260
LweI	GCATC	2 cut(s)	89, 943
MaeI	CTAG	2 cut(s)	438, 941
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	338, 377
MalI	GATC	5 cut(s)	8, 754, 828, 946, 968
MboI	GATC	5 cut(s)	6, 752, 826, 944, 966
MboII	GAAGA	8 cut(s)	16, 44, 59, 607, 656, 965, 968, 1037
MflI	RGATCY	2 cut(s)	6, 944
MhlI	GDGCHC	2 cut(s)	676, 796
MlsI	TGGCCA	1 cut(s)	1143
MluCI	AATT	7 cut(s)	74, 285, 298, 369, 525, 920, 1033
MluNI	TGGCCA	1 cut(s)	1143
MlyI	GAGTC	3 cut(s)	607, 722, 857
MmeI	TCCRAC	2 cut(s)	294, 310
Mox20I	TGGCCA	1 cut(s)	1143
MroI	TCCGGA	1 cut(s)	949
MroXI	GAANNNNTTC	2 cut(s)	39, 960
MscI	TGGCCA	1 cut(s)	1143
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	1143
MspI	CCGG	2 cut(s)	466, 950
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	111, 202
NcoI	CCATGG	1 cut(s)	814
NdeI	CATATG	1 cut(s)	1093
NdeII	GATC	5 cut(s)	6, 752, 826, 944, 966
NlaIII	CATG	5 cut(s)	647, 745, 818, 915, 1111
NlaIV	GGNNCC	2 cut(s)	537, 812
NmuCI	GTSAC	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	669
PdmI	GAANNNNTTC	2 cut(s)	39, 960
PfeI	GAWTC	7 cut(s)	169, 397, 406, 494, 772, 908, 1112
PinAI	ACCGGT	1 cut(s)	465
PkrI	GCNGC	3 cut(s)	104, 250, 683
PleI	GAGTC	3 cut(s)	606, 721, 857
PpsI	GAGTC	3 cut(s)	606, 721, 857
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	549
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	537, 812
PspPI	GGNCC	2 cut(s)	303, 570
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	6, 944
RsaI	GTAC	3 cut(s)	634, 812, 896
RsaNI	GTAC	3 cut(s)	633, 811, 895
RseI	CAYNNNNRTG	1 cut(s)	819
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	103, 249, 682
Sau3AI	GATC	5 cut(s)	6, 752, 826, 944, 966
Sau96I	GGNCC	2 cut(s)	303, 570
SchI	GAGTC	3 cut(s)	607, 722, 857
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	2 cut(s)	676, 796
SfaNI	GCATC	2 cut(s)	89, 943
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	2 cut(s)	303, 570
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	7 cut(s)	74, 285, 298, 369, 525, 920, 1033
SsiI	CCGC	2 cut(s)	214, 682
SspMI	CTAG	2 cut(s)	438, 941
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	3 cut(s)	778, 814, 1056
TaaI	ACNGT	5 cut(s)	296, 377, 721, 899, 1068
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	191, 969
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	7 cut(s)	74, 285, 298, 369, 525, 920, 1033
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	7 cut(s)	169, 397, 406, 494, 772, 908, 1112
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	674, 836
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	102, 248
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	5 cut(s)	17, 139, 486, 902, 1096
TspGWI	ACGGA	2 cut(s)	357, 715
TspRI	CASTG	2 cut(s)	674, 836
VneI	GTGCAC	1 cut(s)	792
VpaK11BI	GGWCC	2 cut(s)	303, 570
XmiI	GTMKAC	1 cut(s)	716
XmnI	GAANNNNTTC	2 cut(s)	39, 960
XspI	CTAG	2 cut(s)	438, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.