Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015030

Physical Location & Seq

Genomic Coordinates Forward (+)

78574293 .. 78575195

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTCGGTCCGTGATCCAGACTCTCACGTTCTGGCTCTCGGAGCACCCATCAATCGTCGGGTTCCGGTGGTCTCACGCCAACTCCTGGGGCTCCACATGGTCCTTCCTCTTCACCGCCATCGCCCTTTACCTAACTATCTCCGTCCTCCTTCACCTCCTCCTCGCCCTCCTCCGCCGCAAGGGTCGACCCGTCCCCCTCGGACCTATCCCCGCCCTCCACTCCCTCTTCATGACCCTCCTCTCCTTCACCATCTTCGCCGGCATCACACTCTCCTCCGCCGCCGAAATCAAAGAAACCAAATGGTTCTGGCGGCGCTCCAAAACCCCCTTCCAGTGGCTCCTCTGCTTCCCCCTCGGGACCCGCCCCTCGGGTCGGGTCTTCTTCTGGTCCTACATCTACTACCTTTCCCGCTTCTTTCACATGATCCGCACATTCTTCACCATCCTCCGCCGCGGCAGATTAGTCCCCTTCCAGCTCTTCAACCACTCCATCCTCACCTTCATCTCCTTCATGTGGCTAGAATTCTCGCAGTCTTTCCAAGTGCTTGCCATACTTTCGACTACGTTGGTTTATTCTGTTGTTTATGCTTATCGGTTCTGGGTCGCAATAGGGCTGCCGCGGGCCTGCTTCGCCTTCGTGGTGAACTGCCAGATGCTGCTGCTGGGATGCAATGTGGCCTGCCACGTTGGGGTTCTGCTGATGCATTTCTTGAAAGGCGGGTGTAATGGAATCGGGGCTTGGGGTTTCAATTCGGTGCTGAATGCGGTGATTCTGTTGCTGTTCTTGAACTTCTACGTGAAGATACATTGGGGTTATGGGAGGAGGGTCGCGTTGGCTGCGGTGGAGGAGGCCAAGGCGGAGGCCGCGGAGGAGGAGGTGGTTAGAGTGAAGGACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009922 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0032870 GO:0033993 GO:0034625 GO:0034626 GO:0042175 GO:0042221 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0050896 GO:0051716 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0072330 GO:0097305 GO:0097306 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

300

Amino Acids

34.43

Weight (kDa)

10.11

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	31 - 269	4.8e-39	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36830 AT4G36830
fragaria_vesca	FvH4_1g14100
malus_domestica	MD02G1155100.v1.1 MD08G1151400.v1.1 MD15G1269600.v1.1
prunus_persica	Prupe.7G148200_v2.0.a1
pyrus_communis	pycom02g12280
rosa_chinensis	RchiOBHm_Chr2g0102761
rosa_laevigata	RLG00000017178
rosa_multiflora	Rmu_sc0006537.1_g000035
rosa_roxburghii	Rroxscaffold_2G00140330
rosa_rugosa	Rorug02G0109400
rosa_samantha	Rh2BG164300 Rh2CG164000
rosa_wichuraiana	Rw2G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	187
AccII	CGCG	4 cut(s)	456, 622, 833, 869
AclWI	GGATC	2 cut(s)	10, 421
AcsI	RAATTY	1 cut(s)	524
AfiI	CCNNNNNNNGG	7 cut(s)	87, 181, 336, 370, 375, 516, 691
AgsI	TTSAA	4 cut(s)	484, 715, 751, 790
AjnI	CCWGG	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 724, 756
AluBI	AGCT	1 cut(s)	478
AluI	AGCT	1 cut(s)	478
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	2 cut(s)	10, 421
AlwNI	CAGNNNCTG	1 cut(s)	658
Ama87I	CYCGRG	2 cut(s)	356, 370
AoxI	GGCC	4 cut(s)	624, 678, 852, 864
ApeKI	GCWGC	4 cut(s)	616, 658, 661, 839
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	6 cut(s)	9, 102, 203, 360, 390, 624
AsuHPI	GGTGA	7 cut(s)	106, 146, 241, 433, 490, 655, 781
AvaI	CYCGRG	2 cut(s)	356, 370
AvaII	GGWCC	5 cut(s)	9, 102, 203, 360, 390
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	603, 645, 648, 826
BccI	CCATC	5 cut(s)	58, 128, 260, 452, 500
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	5 cut(s)	9, 102, 203, 360, 390
BmeT110I	CYCGRG	2 cut(s)	356, 370
BmgT120I	GGNCC	6 cut(s)	9, 102, 203, 360, 390, 624
BmiI	GGNNCC	5 cut(s)	65, 94, 341, 361, 362
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	4 cut(s)	273, 645, 659, 693
BpiI	GAAGAC	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	799
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	8 cut(s)	87, 199, 355, 369, 454, 620, 855, 867
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	7 cut(s)	87, 181, 336, 370, 375, 516, 691
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	8 cut(s)	87, 199, 355, 369, 454, 620, 855, 867
BseGI	GGATG	3 cut(s)	444, 492, 674
BseLI	CCNNNNNNNGG	7 cut(s)	87, 181, 336, 370, 375, 516, 691
BseMI	GCAATG	1 cut(s)	679
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	603, 645, 648, 826
BseYI	CCCAGC	1 cut(s)	664
Bsh1236I	CGCG	4 cut(s)	456, 622, 833, 869
BshFI	GGCC	4 cut(s)	626, 680, 854, 866
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	356, 370
BsiSI	CCGG	2 cut(s)	67, 261
BslFI	GGGAC	3 cut(s)	179, 373, 452
BslI	CCNNNNNNNGG	7 cut(s)	87, 181, 336, 370, 375, 516, 691
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	179, 373, 452
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	4 cut(s)	626, 680, 854, 866
Bso31I	GGTCTC	1 cut(s)	78
BsoBI	CYCGRG	2 cut(s)	356, 370
Bsp1286I	GDGCHC	2 cut(s)	48, 95
Bsp143I	GATC	2 cut(s)	15, 426
BspANI	GGCC	4 cut(s)	626, 680, 854, 866
BspFNI	CGCG	4 cut(s)	456, 622, 833, 869
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	5 cut(s)	65, 94, 341, 361, 362
BspPI	GGATC	2 cut(s)	10, 421
BspQI	GCTCTTC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	8 cut(s)	87, 199, 355, 369, 454, 620, 855, 867
BssMI	GATC	2 cut(s)	15, 426
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	1 cut(s)	88
Bst6I	CTCTTC	3 cut(s)	116, 233, 485
BstBAI	YACGTR	1 cut(s)	799
BstC8I	GCNNGC	5 cut(s)	262, 549, 624, 628, 682
BstDSI	CCRYGG	3 cut(s)	454, 620, 867
BstF5I	GGATG	3 cut(s)	444, 492, 674
BstFNI	CGCG	4 cut(s)	456, 622, 833, 869
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	18, 429
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	15, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 632, 839, 866
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	4 cut(s)	456, 622, 833, 869
BstV1I	GCAGC	4 cut(s)	603, 645, 648, 826
BstV2I	GAAGAC	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	626, 680, 854, 866
BtgI	CCRYGG	3 cut(s)	454, 620, 867
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	444, 492, 674
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	5 cut(s)	262, 549, 624, 628, 682
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	6 cut(s)	9, 102, 203, 360, 390, 624
Cfr42I	CCGCGG	3 cut(s)	457, 623, 870
CpoI	CGGWCCG	1 cut(s)	9
CspI	CGGWCCG	1 cut(s)	9
CviAII	CATG	4 cut(s)	99, 232, 424, 514
DpnI	GATC	2 cut(s)	17, 428
DpnII	GATC	2 cut(s)	15, 426
Eam1104I	CTCTTC	3 cut(s)	116, 233, 485
EarI	CTCTTC	3 cut(s)	116, 233, 485
EciI	GGCGGA	4 cut(s)	164, 268, 440, 875
Eco130I	CCWWGG	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	5 cut(s)	9, 102, 203, 360, 390
Eco88I	CYCGRG	2 cut(s)	356, 370
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	855
EcoT22I	ATGCAT	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	855
FaeI	CATG	4 cut(s)	102, 235, 427, 517
FaiI	YATR	7 cut(s)	100, 233, 425, 515, 554, 588, 819
FaqI	GGGAC	3 cut(s)	179, 373, 452
FatI	CATG	4 cut(s)	98, 231, 423, 513
FauI	CCCGC	5 cut(s)	220, 371, 419, 615, 713
FblI	GTMKAC	1 cut(s)	187
FokI	GGATG	3 cut(s)	431, 479, 681
FriOI	GRGCYC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	521
GlaI	GCGC	1 cut(s)	317
GsaI	CCCAGC	1 cut(s)	668
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	4 cut(s)	626, 680, 854, 866
HapII	CCGG	2 cut(s)	67, 261
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	102, 235, 427, 517
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HinfI	GANTC	3 cut(s)	22, 732, 772
HpaII	CCGG	2 cut(s)	67, 261
HphI	GGTGA	7 cut(s)	106, 146, 241, 433, 490, 655, 781
Hpy166II	GTNNAC	2 cut(s)	188, 646
Hpy188I	TCNGA	2 cut(s)	43, 203
Hpy188III	TCNNGA	5 cut(s)	19, 232, 358, 712, 787
Hpy8I	GTNNAC	2 cut(s)	188, 646
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	9 cut(s)	115, 161, 256, 340, 481, 511, 520, 646, 886
HpyCH4IV	ACGT	4 cut(s)	29, 566, 687, 798
HpyCH4V	TGCA	2 cut(s)	672, 706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 632, 839, 866
HpySE526I	ACGT	4 cut(s)	29, 566, 687, 798
Hsp92II	CATG	4 cut(s)	102, 235, 427, 517
HspAI	GCGC	1 cut(s)	316
KflI	GGGWCCC	1 cut(s)	360
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
KspI	CCGCGG	3 cut(s)	457, 623, 870
Kzo9I	GATC	2 cut(s)	15, 426
LguI	GCTCTTC	1 cut(s)	485
LmnI	GCTCC	4 cut(s)	43, 98, 323, 345
Lsp1109I	GCAGC	4 cut(s)	603, 645, 648, 826
LweI	GCATC	4 cut(s)	273, 645, 659, 693
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	4 cut(s)	29, 566, 687, 798
MalI	GATC	2 cut(s)	17, 428
MboI	GATC	2 cut(s)	15, 426
MboII	GAAGA	8 cut(s)	103, 220, 247, 373, 376, 430, 472, 814
MhlI	GDGCHC	2 cut(s)	48, 95
MluCI	AATT	2 cut(s)	524, 751
MlyI	GAGTC	1 cut(s)	16
Mph1103I	ATGCAT	1 cut(s)	708
MroNI	GCCGGC	1 cut(s)	260
MspA1I	CMGCKG	3 cut(s)	456, 622, 869
MspI	CCGG	2 cut(s)	67, 261
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	4 cut(s)	456, 622, 833, 869
MwoI	GCNNNNNNNGC	4 cut(s)	43, 632, 839, 866
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	15, 426
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	4 cut(s)	102, 235, 427, 517
NlaIV	GGNNCC	5 cut(s)	65, 94, 341, 361, 362
NsiI	ATGCAT	1 cut(s)	708
PagI	TCATGA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	485
PctI	GAATGC	1 cut(s)	769
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	732, 772
PflMI	CCANNNNNTGG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	799
PpuMI	RGGWCCY	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	5 cut(s)	65, 94, 341, 361, 362
PspPI	GGNCC	6 cut(s)	9, 102, 203, 360, 390, 624
PspPPI	RGGWCCY	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	658
Rsr2I	CGGWCCG	1 cut(s)	9
RsrII	CGGWCCG	1 cut(s)	9
SacII	CCGCGG	3 cut(s)	457, 623, 870
SalI	GTCGAC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	485
Sau3AI	GATC	2 cut(s)	15, 426
Sau96I	GGNCC	6 cut(s)	9, 102, 203, 360, 390, 624
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	2 cut(s)	48, 95
SfaNI	GCATC	4 cut(s)	273, 645, 659, 693
Sfr303I	CCGCGG	3 cut(s)	457, 623, 870
SgrBI	CCGCGG	3 cut(s)	457, 623, 870
SinI	GGWCC	5 cut(s)	9, 102, 203, 360, 390
Sse9I	AATT	2 cut(s)	524, 751
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	855
TaiI	ACGT	4 cut(s)	32, 569, 690, 801
TaqI	TCGA	2 cut(s)	187, 560
TasI	AATT	2 cut(s)	524, 751
TauI	GCSGC	7 cut(s)	180, 284, 316, 456, 459, 622, 869
TfiI	GAWTC	2 cut(s)	732, 772
TscAI	CASTG	1 cut(s)	341
TseI	GCWGC	4 cut(s)	616, 658, 661, 839
TspDTI	ATGAA	3 cut(s)	220, 493, 502
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	5 cut(s)	9, 102, 203, 360, 390
XapI	RAATTY	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.