Rroxscaffold_2G00143450

Rho (Ras homology) subfamily of Ras-like small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011005
Physical Location & Seq
Forward (+)
81465062 .. 81468791
3730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143450.1

Sequence Viewer

Length: 1377 bp
ATGGCAATGGTGGTGTCCAGGAATGCTAAGGATCTGGTGGAGATCATTAAGGAGCTTGATGAGTATTTTCTTAAAGCTGCCGACGCCGGTGGCCATCTCTCGTTTCTCTTGGAAGTTCCCACTCCTGGATTTTCTTCTCAGATTAAAGGAGGTAAAGTATATAACCATGGTTGTAATTTGAGTACTCCATCTACATGGACATGGGGTTCGAGTCCTAAACTCAATGGTTTCGGGAAGATGGGTTGCGACGAAATGGTGTTAAGTCATTTAGGCAGCGAAATTGGGAATGATGGTGTGGTGCATAGCAGCCATTGTTCTACTGTGGAGAGGCTTTATGCTTGGGAAAAGAAACTATTCCAGGAGGTCAAGGAGGCAGAGACAATAAAGATAGAGCATGAGAAAAGGGTGTCAACATTGAAGAAGCTAGAGATGAAGAGGGCAGCAGACTATGTGAAGACTGAGAAGACCAAGAAAGAGGTGGAAAAGTTGGAGTCACAAATGATGGTTTCTTCTCAGGCCATTGAGACAACTTCTGCTGAGATCATCAAGATAAGGGACACAGAGTTGTACCCTCAACTACTTGAGCTTGTCAAAGGATTGATGTGTATGTGGAGAAGCATGTATGAGTGCCACCAAGTCCAGAAGCATATTGTTCAGCAACTCAAATACCTTAACACCATACCATCTACTGAGCCCACATCTGAGATTCACAGGCAATCAACTCTCCAGCTCGAGGTTCATGTCCAGCAATGGCACCAGTCCTTTTGCAACCTGGTCATGGCTCAATGTGACTATATCCAGTCCCTTACAGGATGGCTCCGGCTTAGCCTCTTCCAGTTTAGGAGAAATCCATTACCAAAAACAAGTCAAGAATCAAGAATTTACACGTTCTGTGAAGAATGGCACCATGCAGTTGATCGAATCCCAGACAAAGTAGCATCTGAAGGAATCAAGAGCTTTTTAACTGTAGTGCATGCCATTGTAGTTCAACAAGCCGAAGAAAACAAGCAAAAAAAGAAGTCAGAATCTGCGTTTAAAGAGCTCGAGAAGAAGTCAAGTCAACTCAGGTCACTTGAGTCCAAACATGGCCCTTTCTCAATGCTAGATTCCTCTAGCTCTACTGCAAAGAACCCAGTCGCTGATAAGCGAGCAAAGGTGGAGAACTCGAGAGTAAAAGCAGAAGAGGAGAAGAGCAAGCATGAAAAGTTTGTGAGCGTGACAAGATCCATGACCATAAATAACTTGCAGATGGGGTTTCCACATGTGTTTGAGTCGATGGTAGGCTTTTCAAGTGTGTGTATGCAGGCGTTCGAGTCATTATATAACCAAGCCAAAAGTGCTGATCAGGAGCTGGATGTTAAGAGGCTACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632 Ras

Protein Analysis

458

Amino Acids

52.23

Weight (kDa)

8.22

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 12 - 325 3.2e-106 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51290 AT3G51290 AT3G51290
fragaria_vesca FvH4_1g11480 FvH4_1g11480
malus_domestica MD15G1242800.v1.1
prunus_persica Prupe.7G171300_v2.0.a1 Prupe.7G171300_v2.0.a1
pyrus_communis pycom02g09980 pycom15g21400
rosa_chinensis RchiOBHm_Chr2g0099091
rosa_laevigata RLG00000016847
rosa_multiflora Rmu_sc0012098.1_g000004
rosa_roxburghii Rroxscaffold_2G00143450
rosa_rugosa Rorug02G0076600
rosa_samantha Rh2AG125700 Rh2BG129000 Rh2CG130000 Rh2DG130400
rosa_wichuraiana Rw2G009680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 753, 903
AclWI GGATC 2 cut(s) 39, 1218
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 1 cut(s) 879
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 184, 569
AfiI CCNNNNNNNGG 3 cut(s) 125, 733, 778
AflIII ACRYGT 2 cut(s) 885, 1261
AgsI TTSAA 3 cut(s) 418, 989, 1290
AjnI CCWGG 4 cut(s) 17, 124, 357, 771
AloI GAACNNNNNNTCC 2 cut(s) 190, 222
AluBI AGCT 9 cut(s) 55, 77, 424, 586, 730, 957, 1042, 1116, 1351
AluI AGCT 9 cut(s) 55, 77, 424, 586, 730, 957, 1042, 1116, 1351
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 2 cut(s) 371, 518
AlwI GGATC 2 cut(s) 39, 1218
AlwNI CAGNNNCTG 3 cut(s) 1028, 1139, 1351
Ama87I CYCGRG 3 cut(s) 731, 1043, 1165
AoxI GGCC 3 cut(s) 91, 516, 1087
ApeKI GCWGC 4 cut(s) 77, 273, 306, 440
ApoI RAATTY 1 cut(s) 879
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 1088
AvaI CYCGRG 3 cut(s) 731, 1043, 1165
BalI TGGCCA 1 cut(s) 93
BanI GGYRCC 2 cut(s) 753, 903
BanII GRGCYC 2 cut(s) 696, 1044
BbsI GAAGAC 2 cut(s) 461, 470
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 4 cut(s) 64, 285, 318, 452
BccI CCATC 9 cut(s) 102, 196, 232, 284, 496, 691, 807, 1243, 1270
BciT130I CCWGG 4 cut(s) 19, 126, 359, 773
BclI TGATCA 1 cut(s) 1342
BcoDI GTCTC 2 cut(s) 371, 518
BfaI CTAG 3 cut(s) 425, 1103, 1113
BfmI CTRYAG 1 cut(s) 966
BisI GCNGC 4 cut(s) 78, 274, 307, 441
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 4 cut(s) 79, 275, 308, 442
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 4 cut(s) 19, 126, 359, 773
BmeT110I CYCGRG 3 cut(s) 731, 1043, 1165
BmgT120I GGNCC 1 cut(s) 1088
BmiI GGNNCC 3 cut(s) 755, 818, 905
BmrFI CCNGG 4 cut(s) 19, 126, 359, 773
BmrI ACTGGG 1 cut(s) 1127
BmsI GCATC 1 cut(s) 947
BmuI ACTGGG 1 cut(s) 1127
BpiI GAAGAC 2 cut(s) 461, 470
BpmI CTGGAG 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 2 cut(s) 602, 1094
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 733, 778
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 4 cut(s) 757, 799, 835, 1133
Bse3DI GCAATG 2 cut(s) 12, 755
BseBI CCWGG 4 cut(s) 19, 126, 359, 773
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 818, 1360
BseLI CCNNNNNNNGG 3 cut(s) 125, 733, 778
BseMI GCAATG 2 cut(s) 12, 755
BseMII CTCAG 7 cut(s) 152, 450, 527, 528, 681, 693, 1078
BseNI ACTGG 4 cut(s) 757, 799, 835, 1133
BseRI GAGGAG 1 cut(s) 1199
BseXI GCAGC 4 cut(s) 64, 285, 318, 452
BshFI GGCC 3 cut(s) 93, 518, 1089
BshNI GGYRCC 2 cut(s) 753, 903
BsiHKAI GWGCWC 1 cut(s) 1044
BsiHKCI CYCGRG 3 cut(s) 731, 1043, 1165
BsiSI CCGG 2 cut(s) 87, 820
BslFI GGGAC 2 cut(s) 569, 787
BslI CCNNNNNNNGG 3 cut(s) 125, 733, 778
BsmAI GTCTC 2 cut(s) 371, 518
BsmFI GGGAC 2 cut(s) 569, 787
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 3 cut(s) 93, 518, 1089
BsoBI CYCGRG 3 cut(s) 731, 1043, 1165
Bsp1286I GDGCHC 2 cut(s) 696, 1044
Bsp143I GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
Bsp1720I GCTNAGC 1 cut(s) 824
Bsp19I CCATGG 1 cut(s) 166
BspANI GGCC 3 cut(s) 93, 518, 1089
BspCNI CTCAG 7 cut(s) 151, 451, 526, 529, 682, 694, 1077
BspLI GGNNCC 3 cut(s) 755, 818, 905
BspPI GGATC 2 cut(s) 39, 1218
BspQI GCTCTTC 1 cut(s) 1184
BspT107I GGYRCC 2 cut(s) 753, 903
BsrDI GCAATG 2 cut(s) 12, 755
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 4 cut(s) 757, 799, 835, 1133
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 4 cut(s) 19, 126, 359, 773
Bst4CI ACNGT 2 cut(s) 322, 967
Bst6I CTCTTC 4 cut(s) 428, 836, 1176, 1184
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 975, 1149, 1196, 1305
BstDEI CTNAG 9 cut(s) 27, 138, 459, 513, 537, 690, 702, 824, 1064
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 818, 1360
BstKTI GATC 6 cut(s) 34, 45, 543, 919, 1226, 1345
BstMAI GTCTC 2 cut(s) 371, 518
BstMBI GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
BstMWI GCNNNNNNNGC 2 cut(s) 83, 1337
BstNI CCWGG 4 cut(s) 19, 126, 359, 773
BstNSI RCATGY 3 cut(s) 622, 977, 1265
BstSCI CCNGG 4 cut(s) 17, 124, 357, 771
BstSFI CTRYAG 1 cut(s) 966
BstV1I GCAGC 4 cut(s) 64, 285, 318, 452
BstV2I GAAGAC 2 cut(s) 461, 470
BstX2I RGATCY 2 cut(s) 31, 1223
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 2 cut(s) 31, 1223
BsuRI GGCC 3 cut(s) 93, 518, 1089
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 818, 1360
Cac8I GCNNGC 4 cut(s) 975, 1149, 1196, 1305
CaiI CAGNNNCTG 3 cut(s) 1028, 1139, 1351
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 1088
CseI GACGC 1 cut(s) 92
CsiI ACCWGGT 1 cut(s) 771
Csp6I GTAC 2 cut(s) 183, 568
CviQI GTAC 2 cut(s) 183, 568
DdeI CTNAG 9 cut(s) 27, 138, 459, 513, 537, 690, 702, 824, 1064
DpnI GATC 6 cut(s) 33, 44, 542, 918, 1225, 1344
DpnII GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
DraI TTTAAA 1 cut(s) 1036
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 4 cut(s) 428, 836, 1176, 1184
EarI CTCTTC 4 cut(s) 428, 836, 1176, 1184
Ecl136II GAGCTC 1 cut(s) 1042
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 696, 1044
Eco53kI GAGCTC 1 cut(s) 1042
Eco57I CTGAAG 1 cut(s) 963
Eco88I CYCGRG 3 cut(s) 731, 1043, 1165
EcoICRI GAGCTC 1 cut(s) 1042
EcoRII CCWGG 4 cut(s) 17, 124, 357, 771
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 2 cut(s) 696, 1044
ErhI CCWWGG 1 cut(s) 166
FaqI GGGAC 2 cut(s) 569, 787
FbaI TGATCA 1 cut(s) 1342
Fnu4HI GCNGC 4 cut(s) 78, 274, 307, 441
FokI GGATG 2 cut(s) 825, 1367
FriOI GRGCYC 2 cut(s) 696, 1044
Fsp4HI GCNGC 4 cut(s) 78, 274, 307, 441
FspBI CTAG 3 cut(s) 425, 1103, 1113
GluI GCNGC 4 cut(s) 78, 274, 307, 441
GsuI CTGGAG 1 cut(s) 710
HaeIII GGCC 3 cut(s) 93, 518, 1089
HapII CCGG 2 cut(s) 87, 820
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
HincII GTYRAC 2 cut(s) 411, 1061
HindII GTYRAC 2 cut(s) 411, 1061
HpaII CCGG 2 cut(s) 87, 820
Hpy166II GTNNAC 2 cut(s) 411, 1061
Hpy188I TCNGA 4 cut(s) 141, 703, 943, 1024
Hpy188III TCNNGA 9 cut(s) 232, 547, 640, 869, 876, 952, 1045, 1167, 1346
Hpy8I GTNNAC 2 cut(s) 411, 1061
Hpy99I CGWCG 2 cut(s) 86, 251
HpyAV CCTTC 1 cut(s) 938
HpyCH4III ACNGT 2 cut(s) 322, 967
HpyCH4IV ACGT 1 cut(s) 887
HpyCH4V TGCA 7 cut(s) 301, 768, 911, 973, 1124, 1246, 1303
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 1337
HpyF3I CTNAG 9 cut(s) 27, 138, 459, 513, 537, 690, 702, 824, 1064
HpySE526I ACGT 1 cut(s) 887
Hsp92I GRCGYC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 1342
Kzo9I GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
LguI GCTCTTC 1 cut(s) 1184
LmnI GCTCC 3 cut(s) 52, 822, 1348
Lsp1109I GCAGC 4 cut(s) 64, 285, 318, 452
LweI GCATC 1 cut(s) 947
MabI ACCWGGT 1 cut(s) 771
MaeI CTAG 3 cut(s) 425, 1103, 1113
MaeII ACGT 1 cut(s) 887
MaeIII GTNAC 4 cut(s) 492, 788, 1068, 1216
MalI GATC 6 cut(s) 33, 44, 542, 918, 1225, 1344
MboI GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
MflI RGATCY 2 cut(s) 31, 1223
MhlI GDGCHC 2 cut(s) 696, 1044
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 4 cut(s) 175, 279, 879, 1372
MluNI TGGCCA 1 cut(s) 93
MlyI GAGTC 5 cut(s) 220, 500, 1085, 1280, 1322
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 353
MscI TGGCCA 1 cut(s) 93
MseI TTAA 9 cut(s) 48, 72, 144, 260, 672, 962, 1035, 1359, 1375
MslI CAYNNNNRTG 2 cut(s) 193, 199
Msp20I TGGCCA 1 cut(s) 93
MspI CCGG 2 cut(s) 87, 820
MspR9I CCNGG 4 cut(s) 19, 126, 359, 773
Mva1269I GAATGC 1 cut(s) 28
MvaI CCWGG 4 cut(s) 19, 126, 359, 773
MwoI GCNNNNNNNGC 2 cut(s) 83, 1337
NcoI CCATGG 1 cut(s) 166
NdeII GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
NlaIV GGNNCC 3 cut(s) 755, 818, 905
NmuCI GTSAC 4 cut(s) 492, 788, 1068, 1216
NspI RCATGY 3 cut(s) 622, 977, 1265
PaeI GCATGC 1 cut(s) 977
PaeR7I CTCGAG 3 cut(s) 731, 1043, 1165
PciI ACATGT 1 cut(s) 1261
PciSI GCTCTTC 1 cut(s) 1184
PctI GAATGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 6 cut(s) 706, 872, 921, 948, 1025, 1106
PfoI TCCNGGA 3 cut(s) 17, 124, 357
PkrI GCNGC 4 cut(s) 79, 275, 308, 442
PleI GAGTC 5 cut(s) 219, 499, 1084, 1279, 1321
PpsI GAGTC 5 cut(s) 219, 499, 1084, 1279, 1321
PscI ACATGT 1 cut(s) 1261
Psp124BI GAGCTC 1 cut(s) 1044
Psp6I CCWGG 4 cut(s) 17, 124, 357, 771
PspGI CCWGG 4 cut(s) 17, 124, 357, 771
PspN4I GGNNCC 3 cut(s) 755, 818, 905
PspPI GGNCC 1 cut(s) 1088
PspXI VCTCGAGB 1 cut(s) 731
PstNI CAGNNNCTG 3 cut(s) 1028, 1139, 1351
PsuI RGATCY 2 cut(s) 31, 1223
RsaI GTAC 2 cut(s) 184, 569
RsaNI GTAC 2 cut(s) 183, 568
RseI CAYNNNNRTG 2 cut(s) 193, 199
SacI GAGCTC 1 cut(s) 1044
SapI GCTCTTC 1 cut(s) 1184
SaqAI TTAA 9 cut(s) 48, 72, 144, 260, 672, 962, 1035, 1359, 1375
SatI GCNGC 4 cut(s) 78, 274, 307, 441
Sau3AI GATC 6 cut(s) 31, 42, 540, 916, 1223, 1342
Sau96I GGNCC 1 cut(s) 1088
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 5 cut(s) 220, 500, 1085, 1280, 1322
ScrFI CCNGG 4 cut(s) 19, 126, 359, 773
SduI GDGCHC 2 cut(s) 696, 1044
SexAI ACCWGGT 1 cut(s) 771
SfaNI GCATC 1 cut(s) 947
SfcI CTRYAG 1 cut(s) 966
Sfr274I CTCGAG 3 cut(s) 731, 1043, 1165
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 3 cut(s) 731, 1043, 1165
SmiMI CAYNNNNRTG 2 cut(s) 193, 199
SmlI CTYRAG 5 cut(s) 581, 731, 1043, 1073, 1165
SmoI CTYRAG 5 cut(s) 581, 731, 1043, 1073, 1165
SphI GCATGC 1 cut(s) 977
Sse9I AATT 4 cut(s) 175, 279, 879, 1372
SspMI CTAG 3 cut(s) 425, 1103, 1113
SstI GAGCTC 1 cut(s) 1044
StyD4I CCNGG 4 cut(s) 17, 124, 357, 771
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 322, 967
TaiI ACGT 1 cut(s) 890
TaqI TCGA 7 cut(s) 209, 732, 919, 1044, 1166, 1274, 1311
TasI AATT 4 cut(s) 175, 279, 879, 1372
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 6 cut(s) 706, 872, 921, 948, 1025, 1106
Tru1I TTAA 9 cut(s) 48, 72, 144, 260, 672, 962, 1035, 1359, 1375
Tru9I TTAA 9 cut(s) 48, 72, 144, 260, 672, 962, 1035, 1359, 1375
TseFI GTSAC 4 cut(s) 492, 788, 1068, 1216
TseI GCWGC 4 cut(s) 77, 273, 306, 440
Tsp45I GTSAC 4 cut(s) 492, 788, 1068, 1216
TspDTI ATGAA 3 cut(s) 446, 728, 1215
XapI RAATTY 1 cut(s) 879
XceI RCATGY 3 cut(s) 622, 977, 1265
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XhoI CTCGAG 3 cut(s) 731, 1043, 1165
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 3 cut(s) 425, 1103, 1113
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.