Rorug02G0076600

Rho (Ras homology) subfamily of Ras-like small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011005
Physical Location & Seq
Reverse (-)
6057678 .. 6059713
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0076600.1

Sequence Viewer

Length: 1047 bp
ATGGCTCCACCTTTTCTTGAGCTCAGCACTATTGGAAGCCATGATCATGATCAAGATCAGTATGATCATCATCATCATGACCTCTTCAATTATCTAGAACCTCAATCTTCTTTTTCCTCCACTACTTCCTCTCTTTCTAGTCCCATATTCTTAAGTCCAGCTCAAGTCCAAGGACCAATATCTGAACACTACTATAGAGAACCGCAAAACTTTCAATTCCAGCTACTAGAGGCTGATCACATTGTTTCGTATGGCGGATCATGTGATCACGATCAAACCCTTGGAAATGAAGGTGAGAAAGGTACTCTGATCAATTTAAGTATTGATTCCAAGCATGGAGCTGATGATCACAGAAATCATGAAAGTCGAAGTACTCGTGCTGAGAATATTTCGGTTAAGTGGATGTCTTCGAAGATGAGGATCATGAGGAAGATGACCAACCCGGATCAAACAATTAGTAGTAATACTACTGCTGCTACTAGTGATAGTACTGCACGAGTTAACTTCTCATCATCACACAACTTTGAAGAGCAGAAGCTGCATCCATCATCACCTTTAGGAACCGACAGCTCAAACAACACGAACCCGATTAGGGTTTGCTCCGATTGCAACACAACCAAGACACCTCTGTGGAGAAGTGGACCTAGAGGTCCTAAGTCACTTTGTAACGCCTGTGGAATTCGGCAAAGGAAAGCAAGGCGGGCCATGGCGGCAGCCGCGGCAGCAGCAAACGGCACAACCCTGGCGGTGGAGGCGGCGCCATCTATGATCAAGGCGAGTAAGATGAAACTTAAAGACAACAAAACTATTCCATTCAAGAAAAGGTGCCACAAACTTACTACCTCCCCTTCACCTCGAGGCAAATCGAAGACCAAGCTTCGTTACGAAGATTTCTCAATTAGCAGCATGAATCAGAATTCAGGCGCTGCTCCTCCCACTACTGCTACTACTACTACCACCACCACTTTTCAACGAGTTTTCCCTCAAGACGAGAAGGAAGCTGCGATCCTGCTAATGGCCCTATCATGTGGACTGGTTCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632 Ras

Protein Analysis

348

Amino Acids

38.2

Weight (kDa)

8.89

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 200 - 234 1.2e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51290 AT3G51290 AT3G51290
fragaria_vesca FvH4_1g11480 FvH4_1g11480
malus_domestica MD15G1242800.v1.1
prunus_persica Prupe.7G171300_v2.0.a1 Prupe.7G171300_v2.0.a1
pyrus_communis pycom02g09980 pycom15g21400
rosa_chinensis RchiOBHm_Chr2g0099091
rosa_laevigata RLG00000016847
rosa_multiflora Rmu_sc0012098.1_g000004
rosa_roxburghii Rroxscaffold_2G00143450
rosa_rugosa Rorug02G0076600
rosa_samantha Rh2AG125700 Rh2BG129000 Rh2CG130000 Rh2DG130400
rosa_wichuraiana Rw2G009680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 648
AbsI CCTCGAGG 1 cut(s) 855
AccB1I GGYRCC 2 cut(s) 757, 825
AccII CGCG 1 cut(s) 719
AciI CCGC 8 cut(s) 203, 255, 700, 710, 717, 719, 746, 755
AclWI GGATC 4 cut(s) 265, 428, 453, 1000
AcsI RAATTY 2 cut(s) 678, 916
AcyI GRCGYC 1 cut(s) 758
AfaI GTAC 3 cut(s) 304, 373, 490
AfiI CCNNNNNNNGG 3 cut(s) 592, 748, 1015
AflII CTTAAG 1 cut(s) 151
AgsI TTSAA 6 cut(s) 88, 215, 527, 817, 971, 1040
AhlI ACTAGT 1 cut(s) 479
AjnI CCWGG 1 cut(s) 741
AleI CACNNNNGTG 1 cut(s) 628
AluBI AGCT 8 cut(s) 22, 161, 223, 341, 538, 570, 877, 1001
AluI AGCT 8 cut(s) 22, 161, 223, 341, 538, 570, 877, 1001
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 4 cut(s) 265, 428, 453, 1000
AlwNI CAGNNNCTG 2 cut(s) 538, 926
Ama87I CYCGRG 1 cut(s) 855
AoxI GGCC 2 cut(s) 702, 1017
ApeKI GCWGC 8 cut(s) 473, 538, 713, 722, 725, 903, 926, 1001
ApoI RAATTY 2 cut(s) 678, 916
AspLEI GCGC 2 cut(s) 760, 926
AspS9I GGNCC 5 cut(s) 173, 641, 650, 702, 1018
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 305, 543, 843
AsuII TTCGAA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 855
AvaII GGWCC 3 cut(s) 173, 641, 650
BanI GGYRCC 2 cut(s) 757, 825
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 2 cut(s) 375, 495
BbsI GAAGAC 2 cut(s) 399, 875
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 8 cut(s) 460, 525, 725, 734, 737, 913, 915, 988
BccI CCATC 2 cut(s) 553, 769
BceAI ACGGC 1 cut(s) 748
BciT130I CCWGG 1 cut(s) 743
BclI TGATCA 8 cut(s) 43, 49, 64, 235, 265, 309, 346, 768
BcnI CCSGG 1 cut(s) 443
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 5 cut(s) 95, 138, 227, 480, 645
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 2 cut(s) 761, 927
BfrI CTTAAG 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 710
BlpI GCTNAGC 1 cut(s) 23
BmcAI AGTACT 2 cut(s) 373, 490
Bme1390I CCNGG 2 cut(s) 443, 743
Bme18I GGWCC 3 cut(s) 173, 641, 650
BmeT110I CYCGRG 1 cut(s) 855
BmgT120I GGNCC 5 cut(s) 173, 641, 650, 702, 1018
BmiI GGNNCC 4 cut(s) 6, 562, 759, 827
BmrFI CCNGG 2 cut(s) 443, 743
BmsI GCATC 1 cut(s) 550
BpiI GAAGAC 2 cut(s) 399, 875
Bpu1102I GCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 3 cut(s) 38, 147, 969
BpuMI CCSGG 1 cut(s) 443
BsaBI GATNNNNATC 5 cut(s) 48, 54, 69, 270, 419
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 5 cut(s) 169, 280, 705, 717, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 592, 748, 1015
Bse1I ACTGG 1 cut(s) 1038
Bse8I GATNNNNATC 5 cut(s) 48, 54, 69, 270, 419
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 5 cut(s) 169, 280, 705, 717, 741
BseGI GGATG 2 cut(s) 408, 541
BseJI GATNNNNATC 5 cut(s) 48, 54, 69, 270, 419
BseLI CCNNNNNNNGG 3 cut(s) 592, 748, 1015
BseMII CTCAG 2 cut(s) 37, 372
BseNI ACTGG 1 cut(s) 1038
BseRI GAGGAG 1 cut(s) 921
BseXI GCAGC 8 cut(s) 460, 525, 725, 734, 737, 913, 915, 988
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 719
BshFI GGCC 2 cut(s) 704, 1019
BshNI GGYRCC 2 cut(s) 757, 825
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 3 cut(s) 592, 748, 1015
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 704, 1019
BsoBI CYCGRG 1 cut(s) 855
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 24
Bsp1720I GCTNAGC 1 cut(s) 23
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 8 cut(s) 203, 255, 700, 710, 717, 719, 746, 755
BspANI GGCC 2 cut(s) 704, 1019
BspCNI CTCAG 2 cut(s) 36, 373
BspFNI CGCG 1 cut(s) 719
BspHI TCATGA 4 cut(s) 46, 76, 358, 423
BspLI GGNNCC 4 cut(s) 6, 562, 759, 827
BspPI GGATC 4 cut(s) 265, 428, 453, 1000
BspQI GCTCTTC 1 cut(s) 522
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 2 cut(s) 757, 825
BspTI CTTAAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 1038
BssECI CCNNGG 5 cut(s) 169, 280, 705, 717, 741
BssNI GRCGYC 1 cut(s) 758
BssSI CACGAG 2 cut(s) 375, 495
BssT1I CCWWGG 3 cut(s) 169, 280, 705
Bst2BI CACGAG 2 cut(s) 375, 495
Bst2UI CCWGG 1 cut(s) 743
Bst6I CTCTTC 2 cut(s) 89, 522
BstACI GRCGYC 1 cut(s) 758
BstAFI CTTAAG 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 538
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 702
BstDEI CTNAG 3 cut(s) 23, 381, 654
BstDSI CCRYGG 2 cut(s) 705, 717
BstF5I GGATG 2 cut(s) 408, 541
BstFNI CGCG 1 cut(s) 719
BstH2I RGCGCY 2 cut(s) 761, 927
BstHHI GCGC 2 cut(s) 760, 926
BstMWI GCNNNNNNNGC 9 cut(s) 538, 606, 701, 710, 716, 719, 722, 725, 752
BstNI CCWGG 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 441, 741
BstSFI CTRYAG 1 cut(s) 193
BstUI CGCG 1 cut(s) 719
BstV1I GCAGC 8 cut(s) 460, 525, 725, 734, 737, 913, 915, 988
BstV2I GAAGAC 2 cut(s) 399, 875
BsuRI GGCC 2 cut(s) 704, 1019
BtgI CCRYGG 2 cut(s) 705, 717
BtsCI GGATG 2 cut(s) 408, 541
Cac8I GCNNGC 1 cut(s) 702
CaiI CAGNNNCTG 2 cut(s) 538, 926
CciI TCATGA 4 cut(s) 46, 76, 358, 423
CfoI GCGC 2 cut(s) 760, 926
Cfr13I GGNCC 5 cut(s) 173, 641, 650, 702, 1018
Cfr42I CCGCGG 1 cut(s) 720
Csp6I GTAC 3 cut(s) 303, 372, 489
CviQI GTAC 3 cut(s) 303, 372, 489
DdeI CTNAG 3 cut(s) 23, 381, 654
DinI GGCGCC 1 cut(s) 759
DrdI GACNNNNNNGTC 1 cut(s) 648
DseDI GACNNNNNNGTC 1 cut(s) 648
Eam1104I CTCTTC 2 cut(s) 89, 522
EarI CTCTTC 2 cut(s) 89, 522
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 3 cut(s) 169, 280, 705
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 3 cut(s) 173, 641, 650
Eco53kI GAGCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 650
EcoRI GAATTC 2 cut(s) 678, 916
EcoRII CCWGG 1 cut(s) 741
EcoT14I CCWWGG 3 cut(s) 169, 280, 705
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 759
EheI GGCGCC 1 cut(s) 759
ErhI CCWWGG 3 cut(s) 169, 280, 705
FaqI GGGAC 1 cut(s) 126
FauI CCCGC 1 cut(s) 693
FbaI TGATCA 8 cut(s) 43, 49, 64, 235, 265, 309, 346, 768
FokI GGATG 2 cut(s) 415, 528
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 5 cut(s) 95, 138, 227, 480, 645
GlaI GCGC 2 cut(s) 759, 925
HaeII RGCGCY 2 cut(s) 761, 927
HaeIII GGCC 2 cut(s) 704, 1019
HapII CCGG 1 cut(s) 443
HhaI GCGC 2 cut(s) 760, 926
Hin1I GRCGYC 1 cut(s) 758
Hin6I GCGC 2 cut(s) 758, 924
HinP1I GCGC 2 cut(s) 758, 924
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 2 cut(s) 326, 910
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 1 cut(s) 443
HphI GGTGA 3 cut(s) 305, 543, 843
Hpy166II GTNNAC 3 cut(s) 502, 641, 1031
Hpy188I TCNGA 4 cut(s) 184, 309, 604, 915
Hpy8I GTNNAC 3 cut(s) 502, 641, 1031
HpyAV CCTTC 3 cut(s) 284, 858, 988
HpyCH4V TGCA 3 cut(s) 494, 541, 609
HpyF10VI GCNNNNNNNGC 9 cut(s) 538, 606, 701, 710, 716, 719, 722, 725, 752
HpyF3I CTNAG 3 cut(s) 23, 381, 654
Hsp92I GRCGYC 1 cut(s) 758
HspAI GCGC 2 cut(s) 758, 924
KasI GGCGCC 1 cut(s) 757
Ksp22I TGATCA 8 cut(s) 43, 49, 64, 235, 265, 309, 346, 768
KspAI GTTAAC 1 cut(s) 502
KspI CCGCGG 1 cut(s) 720
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 4 cut(s) 10, 338, 605, 934
LpnPI CCDG 9 cut(s) 171, 233, 456, 685, 728, 755, 906, 1019, 1022
Lsp1109I GCAGC 8 cut(s) 460, 525, 725, 734, 737, 913, 915, 988
LweI GCATC 1 cut(s) 550
MaeI CTAG 5 cut(s) 95, 138, 227, 480, 645
MaeIII GTNAC 3 cut(s) 657, 665, 881
MboII GAAGA 8 cut(s) 76, 99, 399, 424, 442, 539, 880, 899
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 7 cut(s) 88, 215, 313, 453, 678, 897, 916
Mly113I GGCGCC 1 cut(s) 758
MseI TTAA 5 cut(s) 152, 317, 396, 501, 792
MslI CAYNNNNRTG 3 cut(s) 45, 75, 628
MspA1I CMGCKG 1 cut(s) 719
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 443, 743
MvaI CCWGG 1 cut(s) 743
MvnI CGCG 1 cut(s) 719
MwoI GCNNNNNNNGC 9 cut(s) 538, 606, 701, 710, 716, 719, 722, 725, 752
NarI GGCGCC 1 cut(s) 758
NciI CCSGG 1 cut(s) 443
NcoI CCATGG 1 cut(s) 705
NlaIV GGNNCC 4 cut(s) 6, 562, 759, 827
NmuCI GTSAC 1 cut(s) 657
NspV TTCGAA 1 cut(s) 410
OliI CACNNNNGTG 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 855
PagI TCATGA 4 cut(s) 46, 76, 358, 423
PciSI GCTCTTC 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 373
PfeI GAWTC 2 cut(s) 326, 910
PluTI GGCGCC 1 cut(s) 761
PpuMI RGGWCCY 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 741
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 4 cut(s) 6, 562, 759, 827
PspPI GGNCC 5 cut(s) 173, 641, 650, 702, 1018
PspPPI RGGWCCY 1 cut(s) 650
PspXI VCTCGAGB 1 cut(s) 855
PstNI CAGNNNCTG 2 cut(s) 538, 926
RsaI GTAC 3 cut(s) 304, 373, 490
RsaNI GTAC 3 cut(s) 303, 372, 489
RseI CAYNNNNRTG 3 cut(s) 45, 75, 628
SacI GAGCTC 1 cut(s) 24
SacII CCGCGG 1 cut(s) 720
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 5 cut(s) 152, 317, 396, 501, 792
Sau96I GGNCC 5 cut(s) 173, 641, 650, 702, 1018
ScaI AGTACT 2 cut(s) 373, 490
ScrFI CCNGG 2 cut(s) 443, 743
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 759
Sfr274I CTCGAG 1 cut(s) 855
Sfr303I CCGCGG 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 410
SgrBI CCGCGG 1 cut(s) 720
SinI GGWCC 3 cut(s) 173, 641, 650
SlaI CTCGAG 1 cut(s) 855
SmiMI CAYNNNNRTG 3 cut(s) 45, 75, 628
SmlI CTYRAG 5 cut(s) 17, 151, 162, 855, 984
SmoI CTYRAG 5 cut(s) 17, 151, 162, 855, 984
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 7 cut(s) 88, 215, 313, 453, 678, 897, 916
SsiI CCGC 8 cut(s) 203, 255, 700, 710, 717, 719, 746, 755
SspDI GGCGCC 1 cut(s) 757
SspI AATATT 1 cut(s) 388
SspMI CTAG 5 cut(s) 95, 138, 227, 480, 645
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 441, 741
StyI CCWWGG 3 cut(s) 169, 280, 705
TaqI TCGA 4 cut(s) 367, 410, 856, 866
TasI AATT 7 cut(s) 88, 215, 313, 453, 678, 897, 916
TatI WGTACW 2 cut(s) 371, 488
TauI GCSGC 4 cut(s) 713, 719, 722, 758
TfiI GAWTC 2 cut(s) 326, 910
Tru1I TTAA 5 cut(s) 152, 317, 396, 501, 792
Tru9I TTAA 5 cut(s) 152, 317, 396, 501, 792
TseFI GTSAC 1 cut(s) 657
TseI GCWGC 8 cut(s) 473, 538, 713, 722, 725, 903, 926, 1001
Tsp45I GTSAC 1 cut(s) 657
TspDTI ATGAA 4 cut(s) 303, 375, 800, 923
Vha464I CTTAAG 1 cut(s) 151
VpaK11BI GGWCC 3 cut(s) 173, 641, 650
XapI RAATTY 2 cut(s) 678, 916
XbaI TCTAGA 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 855
XspI CTAG 5 cut(s) 95, 138, 227, 480, 645
ZrmI AGTACT 2 cut(s) 373, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.