Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004518

Physical Location & Seq

Genomic Coordinates Reverse (-)

88577455 .. 88579478

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCACAAACTCCAGCTCTGGATTCAAACAAGGATCACGATTATCACCGTCTTCCTGATTCAGAATCTCCATTATCACCTTCAGGGTCTAGACCAGGTCTCAACAAATATGCTCTTGCTGGTGCCATTTTGGCTTCCACAAACTCTGTCCTCCTAGGCTATGATATAGGAGTGATGAGCGGTGCAGCCCTTTTCATAAGGGAGGACATGAACATTACATCAACTCAAGTAGAGATCTTGGTTGGTTCCCTAAATGTGTGTTCTCTGATCGGATCGGTTGCCTCAGGCAAGACTTCGGATTGGATTGGGAGGCGTTACACTATAGTTCTGGCAGCTGCAACTTTTCTAATAGGGGCACTTCTGATGGGACTAGCACCATCCTTCTCTTTCCTCATAGGCGGTAGAGTAGTGGCTGGGATTGGTGTTGGATATTCATTGATGATTGCCCCGGTTTATGTAGCCGAGCTCTCGCCGGCTCTTACACGTGGCTTTCTGACCTCTCTCCCTGAGGTGTTCATCAATGGTGGAATACTGATAGGGTACATCTCCAACTATGCTTTGTCAGGCCTCCCACAGAACTTGAATTGGAGACTTATGCTTGGACTTGCAGCATTTCCAGCATTTGCTGTTGCAGTTGGCGTGTTGGCAATGCCGGAGTCACCTAGGTGGTTGGTGATGAAAGGCCGGTTAGACGAAGCGAAGCAGGTTTTGATAAGAACATCTGAGAGCAAGGAGGAAGCTGAATTGAGGCTCAAAGAGATAGCCAGAGCAGCTAATTCAATGCCTGCAACTTCTTCAAGCAATTGGAGTGGGCAGGGGGTTTGGAGAGACTTACTGTTGAGGCCCACTAGGCCCATTCGCCGCATTCTCATTGCCGCAATTGGTGTCAACTTTTTCATGCAAGCAAGCTTCCGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

306

Amino Acids

32.77

Weight (kDa)

9.44

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	42 - 302	5.3e-58	Sugar (and other) transporter
MFS_1	PF07690	50 - 301	4.4e-21	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04750 FvH4_1g04750 FvH4_1g04750 FvH4_1g04760 FvH4_1g04760
malus_domestica	MD02G1046300.v1.1 MD15G1184500.v1.1
prunus_persica	Prupe.7G231500_v2.0.a1 Prupe.7G231600_v2.0.a1
pyrus_communis	pycom02g03880 pycom15g16610
rosa_chinensis	RchiOBHm_Chr2g0090351 RchiOBHm_Chr2g0090361
rosa_laevigata	RLG00000016100 RLG00000016102
rosa_multiflora	Rmu_sc0004514.1_g000004 Rmu_sc0006235.1_g000008
rosa_roxburghii	Rroxscaffold_2G00151230 Rroxscaffold_2G00151250
rosa_rugosa	Rorug02G0006700 Rorug02G0006800 Rorug02G0006800
rosa_samantha	Rh2AG052700 Rh2AG052800 Rh2BG051400 Rh2BG051600 Rh2CG053600 Rh2CG053700 Rh2DG052700 Rh2DG052800
rosa_wichuraiana	Rw2G004410 Rw2G004420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	180
AciI	CCGC	4 cut(s)	180, 399, 862, 876
AclWI	GGATC	2 cut(s)	42, 280
AcuI	CTGAAG	1 cut(s)	66
AcvI	CACGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	4 cut(s)	27, 583, 780, 798
AjnI	CCWGG	1 cut(s)	94
AleI	CACNNNNGTG	1 cut(s)	664
AluBI	AGCT	6 cut(s)	17, 335, 466, 740, 773, 909
AluI	AGCT	6 cut(s)	17, 335, 466, 740, 773, 909
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	3 cut(s)	104, 583, 822
AlwI	GGATC	2 cut(s)	42, 280
AoxI	GGCC	4 cut(s)	565, 682, 842, 851
ApeKI	GCWGC	5 cut(s)	185, 332, 335, 608, 770
AspA2I	CCTAGG	2 cut(s)	154, 662
AspS9I	GGNCC	2 cut(s)	843, 852
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	4 cut(s)	38, 69, 651, 685
AvrII	CCTAGG	2 cut(s)	154, 662
AxyI	CCTNAGG	2 cut(s)	283, 507
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	5 cut(s)	197, 322, 344, 620, 782
BccI	CCATC	2 cut(s)	358, 385
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	3 cut(s)	104, 583, 822
BfaI	CTAG	5 cut(s)	90, 155, 371, 663, 849
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	694
BglI	GCCNNNNNGGC	2 cut(s)	131, 850
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	7 cut(s)	186, 333, 336, 609, 771, 862, 876
BlnI	CCTAGG	2 cut(s)	154, 662
BlsI	GCNGC	7 cut(s)	187, 334, 337, 610, 772, 863, 877
Bme1390I	CCNGG	2 cut(s)	96, 449
BmgT120I	GGNCC	2 cut(s)	843, 852
BmiI	GGNNCC	2 cut(s)	124, 247
BmrFI	CCNGG	2 cut(s)	96, 449
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	154, 447, 662
Bse118I	RCCGGY	2 cut(s)	472, 684
Bse21I	CCTNAGG	2 cut(s)	283, 507
Bse3DI	GCAATG	2 cut(s)	654, 870
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	154, 447, 662
BseGI	GGATG	1 cut(s)	377
BseMI	GCAATG	2 cut(s)	654, 870
BseMII	CTCAG	3 cut(s)	297, 498, 714
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	5 cut(s)	197, 322, 344, 620, 782
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	567, 684, 844, 853
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	5 cut(s)	449, 473, 653, 685, 913
BslFI	GGGAC	1 cut(s)	381
BsmAI	GTCTC	3 cut(s)	104, 583, 822
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	864
BsnI	GGCC	4 cut(s)	567, 684, 844, 853
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	358, 468
Bsp143I	GATC	4 cut(s)	34, 234, 267, 272
BspACI	CCGC	4 cut(s)	180, 399, 862, 876
BspANI	GGCC	4 cut(s)	567, 684, 844, 853
BspCNI	CTCAG	3 cut(s)	296, 499, 715
BspLI	GGNNCC	2 cut(s)	124, 247
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	2 cut(s)	42, 280
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	180
BsrDI	GCAATG	2 cut(s)	654, 870
BsrFI	RCCGGY	2 cut(s)	472, 684
BssAI	RCCGGY	2 cut(s)	472, 684
BssECI	CCNNGG	3 cut(s)	154, 447, 662
BssMI	GATC	4 cut(s)	34, 234, 267, 272
BssT1I	CCWWGG	2 cut(s)	154, 662
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	50, 837
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	4 cut(s)	474, 786, 903, 907
BstDEI	CTNAG	3 cut(s)	283, 507, 723
BstF5I	GGATG	1 cut(s)	377
BstKTI	GATC	4 cut(s)	37, 237, 270, 275
BstMAI	GTCTC	3 cut(s)	104, 583, 822
BstMBI	GATC	4 cut(s)	34, 234, 267, 272
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 617, 770, 850
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	94, 447
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	5 cut(s)	197, 322, 344, 620, 782
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
Bsu36I	CCTNAGG	2 cut(s)	283, 507
BsuRI	GGCC	4 cut(s)	567, 684, 844, 853
BtsCI	GGATG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	4 cut(s)	474, 786, 903, 907
Cfr10I	RCCGGY	2 cut(s)	472, 684
Cfr13I	GGNCC	2 cut(s)	843, 852
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	541
CspCI	CAANNNNNGTGG	4 cut(s)	561, 596, 790, 825
CviAII	CATG	2 cut(s)	208, 898
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	3 cut(s)	283, 507, 723
DpnI	GATC	4 cut(s)	36, 236, 269, 274
DpnII	GATC	4 cut(s)	34, 234, 267, 272
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	2 cut(s)	154, 662
Eco147I	AGGCCT	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	485
Eco81I	CCTNAGG	2 cut(s)	283, 507
EcoICRI	GAGCTC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	154, 662
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	2 cut(s)	154, 662
FaeI	CATG	2 cut(s)	211, 901
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	2 cut(s)	207, 897
Fnu4HI	GCNGC	7 cut(s)	186, 333, 336, 609, 771, 862, 876
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	7 cut(s)	186, 333, 336, 609, 771, 862, 876
FspBI	CTAG	5 cut(s)	90, 155, 371, 663, 849
GluI	GCNGC	7 cut(s)	186, 333, 336, 609, 771, 862, 876
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	4 cut(s)	567, 684, 844, 853
HapII	CCGG	5 cut(s)	449, 473, 653, 685, 913
Hin1II	CATG	2 cut(s)	211, 901
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	907
HinfI	GANTC	4 cut(s)	23, 59, 65, 656
HpaII	CCGG	5 cut(s)	449, 473, 653, 685, 913
HphI	GGTGA	4 cut(s)	38, 69, 651, 685
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188I	TCNGA	7 cut(s)	64, 267, 272, 298, 363, 495, 724
Hpy188III	TCNNGA	4 cut(s)	20, 38, 56, 90
Hpy8I	GTNNAC	1 cut(s)	889
HpyAV	CCTTC	2 cut(s)	90, 391
HpyCH4III	ACNGT	2 cut(s)	50, 837
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	6 cut(s)	185, 338, 608, 632, 788, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 617, 770, 850
HpyF3I	CTNAG	3 cut(s)	283, 507, 723
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	211, 901
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	34, 234, 267, 272
Lsp1109I	GCAGC	5 cut(s)	197, 322, 344, 620, 782
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	5 cut(s)	90, 155, 371, 663, 849
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	3 cut(s)	3, 314, 657
MalI	GATC	4 cut(s)	36, 236, 269, 274
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	4 cut(s)	34, 234, 267, 272
MboII	GAAGA	2 cut(s)	44, 786
MfeI	CAATTG	2 cut(s)	802, 879
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	358, 468
MluCI	AATT	5 cut(s)	583, 743, 775, 802, 879
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	406, 573
MroNI	GCCGGC	1 cut(s)	472
MslI	CAYNNNNRTG	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	5 cut(s)	449, 473, 653, 685, 913
MspR9I	CCNGG	2 cut(s)	96, 449
MunI	CAATTG	2 cut(s)	802, 879
Mva1269I	GAATGC	1 cut(s)	864
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	131, 617, 770, 850
NaeI	GCCGGC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	4 cut(s)	34, 234, 267, 272
NgoMIV	GCCGGC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	211, 901
NlaIV	GGNNCC	2 cut(s)	124, 247
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	2 cut(s)	3, 657
OliI	CACNNNNGTG	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	567
PctI	GAATGC	1 cut(s)	864
PdiI	GCCGGC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	23, 59, 65
PflFI	GACNNNGTC	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	187, 334, 337, 610, 772, 863, 877
PleI	GAGTC	1 cut(s)	664
PmaCI	CACGTG	1 cut(s)	485
PmlI	CACGTG	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	664
Ppu21I	YACGTR	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	94
PspCI	CACGTG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	124, 247
PspPI	GGNCC	2 cut(s)	843, 852
PsuI	RGATCY	1 cut(s)	234
PsyI	GACNNNGTC	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	664
SacI	GAGCTC	1 cut(s)	468
SatI	GCNGC	7 cut(s)	186, 333, 336, 609, 771, 862, 876
Sau3AI	GATC	4 cut(s)	34, 234, 267, 272
Sau96I	GGNCC	2 cut(s)	843, 852
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	2 cut(s)	96, 449
SduI	GDGCHC	2 cut(s)	358, 468
SexAI	ACCWGGT	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	321
SfiI	GGCCNNNNNGGCC	1 cut(s)	850
SmiMI	CAYNNNNRTG	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	5 cut(s)	583, 743, 775, 802, 879
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	4 cut(s)	180, 399, 862, 876
SspMI	CTAG	5 cut(s)	90, 155, 371, 663, 849
SstI	GAGCTC	1 cut(s)	468
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	94, 447
StyI	CCWWGG	2 cut(s)	154, 662
TaaI	ACNGT	2 cut(s)	50, 837
TaiI	ACGT	1 cut(s)	487
TasI	AATT	5 cut(s)	583, 743, 775, 802, 879
TauI	GCSGC	2 cut(s)	864, 878
TfiI	GAWTC	3 cut(s)	23, 59, 65
TseFI	GTSAC	2 cut(s)	3, 657
TseI	GCWGC	5 cut(s)	185, 332, 335, 608, 770
Tsp45I	GTSAC	2 cut(s)	3, 657
TspDTI	ATGAA	6 cut(s)	184, 224, 423, 505, 692, 886
Tth111I	GACNNNGTC	1 cut(s)	96
XbaI	TCTAGA	1 cut(s)	89
XmaJI	CCTAGG	2 cut(s)	154, 662
XspI	CTAG	5 cut(s)	90, 155, 371, 663, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.