Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004518

Physical Location & Seq

Genomic Coordinates Forward (+)

612262 .. 617576

Gene Structure 5315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGTCACTCCTTCCCTCCAAGTTTGGCTCTCTCCACCTCCATCTCCTCCGCCCTCCAAACCCTAACCCTAGCCGCCGCGCACTCCCTCATCCTCGCCGCCACACACTCAAAATCTCCAGCGGCAAGAGGTCCGGCAGGCAGAGATACCCATCGGAGAGGAAGGTGCTCAAATTGAAGCACAAGGATATCGTCGGCAACGTCAAGAACAAATACGAGGGCATCTGGAGGCTCTCCAAGCTCGGAGTTCCGGTCGACCGTGACCCCGGAAAGGACTTCCTCGGCGTCTCCCAGAGCTTGCTTGAGGAAATTGCCAAAGTGCTCGAGTTTCCGGTTGCTTCAATGCTGCCCTCGGAGGCCTTCACCGTGGTTCGGAAATCTTTTGATGCAAGGAAGAGGTTGAAAGAACCAAAATTCGTTTACATAGTGGAAATGGATGTTGATAAGCTATTGAGTTTAGAGCCTCGTGCTTGGGACTTCATTTCGGAGTTGGAGCCTAAGGTTGGGCTGGTAGAACACATGCCTCAAGCAAAGATATCTGGAGATTTGACGAGTATTATACATGGCTTGAAAGAAGTGCATCAAAGTTCAGTTTCCGGAGAAAGTGGAAATACAATGCTGAATGGGTCTCAAGGATCGTACAAATTTCCAACGGCTAGAAAACCCAAGATTGCGGTAGTGGGCAGTGGACCATCTGGGCTGTTTGCTGCCCTTGTTCTTGCGGAATTTGGTGCAGATGTCACCTTAATAGAAAGAGGTCAGCCTGTTGAACAGAGGGGGCGCGACATTGGTGCATTGGCTGTCCGCCGGATCTTGCAAACTGAAAGCAATTTCTGCTTTGGAGAGGGTGGTGCAGGTACCTGGAGTGATGGAAAGCTGGTGACTAGGATTGGAAGAAACAGTGGGAGTGTTTTGGCGGTTATGGAAACTTTAGTTCAATTTGGAGCTCCAGAAGGAATACTGGTTAACGGAAAGCCTCATTTGGGAACAGATAAATTGGTTCCACTACTTCGCAATTTTCGGCAGCATCTACTAAAGCTGGGTGTGACCATCAAGTTTGGGACAAGGGTTGATGATCTCCTTGTAGATAATGAACAAGTTGTAGGTGTCAGAGTTTCTGATTCAGTCGACAGGTTACAGTCTAGTAGCAAGAAATGGGAGTACGATGCTGTTGTTCTGGCTGTTGGACATTCTGCACGGGATCTTTATCAAACACTTCTATCTCATAACATTGAGTTGATCCCAAAAGATTTTGCTGTTGGCTTGCGGATTGAGCATCCTCAAGAAGTTGTAAACAGCTTACAGTATTCTGGATTGGCAACTGAGGTTTGCAGAGGACGCGGTAAAGTACCAGTGGCAGATTACAAGGTTGCAAAGTATGTAAGTGGAGAGAACAGGGCTGAACCTTTGCATGCAACAAGTCGAAGCTGCTATTCCTTCTGTATGTGTCCTGGTGGTCAGGTTGTTCTGACAAGTACAAATCCATCTGAAATCTGTGTCAATGGCATGTCATTTTCTCGACGTGACTCAAAGTGGGCAAATGCTGCACTTGTTGTGACCGTCTCAACAAAAGATTTTGGTGCATTGAATCTCCATGGACCTCTAGCAGGGGTTGAGTTTCAGAGAGAATTTGAACAAAGAGCGGCAAGAATGGGAGGTGGAAATTTTGTGGTGCCTGTGCAGACAGTTACAGATTTTATGGACAATAAATTATCAGTAACATCTGTGCCACAGTCAAGTTATCGATTAGGAGTGAAGGCAGCAAATCTTCACAAGTTATTTCCTGATTATGTAACAGAGACTTTACAGCAGTCAATCTCAGCATTTGACAAAGAGTTACCGGGCTTTATCTGCGAAGAGGCCCTTCTTCACGGAGTGGAGACTAGGACCAGTTCTCCCATCCAGATTCCCCGCAGTGTTGAAACTTATGAGAGCACATCGTTGAAAGGTCTCTACCCTATTGGTGAAGGAGCAGGTTATGCTGGAGGGATTGTAAGTGCAGCTGTGGATGGTATGCATGCTGGTTTTGCAGTGGCAAAAAAATTTGGATTGTGTAATGATGGCATAGAGTCAATTTTGGGCAAGGCTCGGAGTGCTGGATTTTTGGAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

703

Amino Acids

76.67

Weight (kDa)

9.19

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox	PF00070	222 - 271	7.4e-06	Pyridine nucleotide-disulphide oxidoreductase
FAD-depend_C	PF21688	416 - 629	2.7e-67	FAD-dependent protein, C-terminal domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04750 FvH4_1g04750 FvH4_1g04750 FvH4_1g04760 FvH4_1g04760
malus_domestica	MD02G1046300.v1.1 MD15G1184500.v1.1
prunus_persica	Prupe.7G231500_v2.0.a1 Prupe.7G231600_v2.0.a1
pyrus_communis	pycom02g03880 pycom15g16610
rosa_chinensis	RchiOBHm_Chr2g0090351 RchiOBHm_Chr2g0090361
rosa_laevigata	RLG00000016100 RLG00000016102
rosa_multiflora	Rmu_sc0004514.1_g000004 Rmu_sc0006235.1_g000008
rosa_roxburghii	Rroxscaffold_2G00151230 Rroxscaffold_2G00151250
rosa_rugosa	Rorug02G0006700 Rorug02G0006800 Rorug02G0006800
rosa_samantha	Rh2AG052700 Rh2AG052800 Rh2BG051400 Rh2BG051600 Rh2CG053600 Rh2CG053700 Rh2DG052700 Rh2DG052800
rosa_wichuraiana	Rw2G004410 Rw2G004420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	842, 1961
Acc65I	GGTACC	1 cut(s)	854
AccB1I	GGYRCC	2 cut(s)	854, 1669
AccBSI	CCGCTC	1 cut(s)	1640
AccI	GTMKAC	2 cut(s)	252, 1125
AccII	CGCG	3 cut(s)	78, 780, 1338
AccIII	TCCGGA	1 cut(s)	593
AclWI	GGATC	4 cut(s)	640, 815, 1206, 1231
AcsI	RAATTY	6 cut(s)	410, 641, 722, 1625, 1660, 2039
AcyI	GRCGYC	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	1873
AfaI	GTAC	6 cut(s)	638, 856, 1160, 1347, 1474, 2108
AfiI	CCNNNNNNNGG	5 cut(s)	268, 369, 500, 980, 1604
AjiI	CACGTC	1 cut(s)	1520
AjnI	CCWGG	2 cut(s)	857, 1447
AluBI	AGCT	9 cut(s)	238, 294, 445, 874, 944, 1036, 1296, 1425, 2000
AluI	AGCT	9 cut(s)	238, 294, 445, 874, 944, 1036, 1296, 1425, 2000
Alw21I	GWGCWC	4 cut(s)	168, 321, 946, 1934
Alw26I	GTCTC	6 cut(s)	289, 630, 1564, 1790, 1871, 1952
AlwI	GGATC	4 cut(s)	640, 815, 1206, 1231
Ama87I	CYCGRG	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	2 cut(s)	354, 1857
ApeKI	GCWGC	7 cut(s)	343, 704, 1021, 1425, 1541, 1757, 1997
ApoI	RAATTY	6 cut(s)	410, 641, 722, 1625, 1660, 2039
Asp718I	GGTACC	1 cut(s)	854
AspLEI	GCGC	2 cut(s)	80, 780
AspS9I	GGNCC	5 cut(s)	129, 686, 1595, 1858, 1884
AsuC2I	CCSGG	2 cut(s)	264, 1839
AsuHPI	GGTGA	4 cut(s)	352, 730, 889, 1973
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	4 cut(s)	129, 686, 1595, 1884
AxyI	CCTNAGG	1 cut(s)	495
BanI	GGYRCC	2 cut(s)	854, 1669
BanII	GRGCYC	1 cut(s)	946
BauI	CACGAG	1 cut(s)	462
Bbv12I	GWGCWC	4 cut(s)	168, 321, 946, 1934
BbvI	GCAGC	7 cut(s)	330, 691, 1033, 1412, 1528, 1769, 2009
BccI	CCATC	9 cut(s)	48, 157, 697, 860, 1055, 1489, 1904, 2000, 2051
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciT130I	CCWGG	2 cut(s)	859, 1449
BcnI	CCSGG	2 cut(s)	264, 1839
BcoDI	GTCTC	6 cut(s)	289, 630, 1564, 1790, 1871, 1952
BfaI	CTAG	7 cut(s)	69, 654, 882, 1140, 1601, 1881, 2110
BfuAI	ACCTGC	2 cut(s)	842, 1961
BmcAI	AGTACT	1 cut(s)	2108
Bme1390I	CCNGG	4 cut(s)	264, 859, 1449, 1839
Bme18I	GGWCC	4 cut(s)	129, 686, 1595, 1884
BmeT110I	CYCGRG	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	1520
BmgT120I	GGNCC	5 cut(s)	129, 686, 1595, 1858, 1884
BmiI	GGNNCC	4 cut(s)	492, 856, 999, 1671
BmrFI	CCNGG	4 cut(s)	264, 859, 1449, 1839
BmsI	GCATC	6 cut(s)	228, 373, 586, 1033, 1153, 1282
BpmI	CTGGAG	6 cut(s)	100, 244, 558, 880, 930, 2001
BpuEI	CTTGAG	4 cut(s)	320, 507, 612, 1263
BpuMI	CCSGG	2 cut(s)	264, 1839
Bsa29I	ATCGAT	1 cut(s)	1741
BsaBI	GATNNNNATC	2 cut(s)	148, 1203
BsaHI	GRCGYC	1 cut(s)	282
BsaI	GGTCTC	2 cut(s)	630, 1952
BsaJI	CCNNGG	5 cut(s)	262, 277, 348, 363, 1591
BsaWI	WCCGGW	3 cut(s)	247, 328, 593
BsaXI	ACNNNNNCTCC	6 cut(s)	234, 264, 1876, 1906, 1974, 2004
Bsc4I	CCNNNNNNNGG	5 cut(s)	268, 369, 500, 980, 1604
Bse1I	ACTGG	3 cut(s)	963, 1349, 1887
Bse21I	CCTNAGG	1 cut(s)	495
Bse8I	GATNNNNATC	2 cut(s)	148, 1203
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	859, 1449
BseCI	ATCGAT	1 cut(s)	1741
BseDI	CCNNGG	5 cut(s)	262, 277, 348, 363, 1591
BseGI	GGATG	5 cut(s)	88, 439, 1273, 1896, 2011
BseJI	GATNNNNATC	2 cut(s)	148, 1203
BseLI	CCNNNNNNNGG	5 cut(s)	268, 369, 500, 980, 1604
BseMII	CTCAG	2 cut(s)	1311, 1830
BseNI	ACTGG	3 cut(s)	963, 1349, 1887
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	7 cut(s)	330, 691, 1033, 1412, 1528, 1769, 2009
BseYI	CCCAGC	1 cut(s)	1036
BsgI	GTGCAG	6 cut(s)	750, 870, 1176, 1527, 1697, 2016
Bsh1236I	CGCG	3 cut(s)	78, 780, 1338
Bsh1285I	CGRYCG	2 cut(s)	252, 256
BshFI	GGCC	2 cut(s)	356, 1859
BshNI	GGYRCC	2 cut(s)	854, 1669
BshVI	ATCGAT	1 cut(s)	1741
BsiEI	CGRYCG	2 cut(s)	252, 256
BsiHKAI	GWGCWC	4 cut(s)	168, 321, 946, 1934
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	7 cut(s)	132, 248, 264, 329, 594, 805, 1838
BslFI	GGGAC	2 cut(s)	485, 1072
BslI	CCNNNNNNNGG	5 cut(s)	268, 369, 500, 980, 1604
BsmAI	GTCTC	6 cut(s)	289, 630, 1564, 1790, 1871, 1952
BsmBI	CGTCTC	2 cut(s)	289, 1564
BsmFI	GGGAC	2 cut(s)	485, 1072
BsnI	GGCC	2 cut(s)	356, 1859
Bso31I	GGTCTC	2 cut(s)	630, 1952
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	4 cut(s)	168, 321, 946, 1934
Bsp13I	TCCGGA	1 cut(s)	593
Bsp143I	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
Bsp19I	CCATGG	1 cut(s)	1591
BspANI	GGCC	2 cut(s)	356, 1859
BspCNI	CTCAG	2 cut(s)	1312, 1829
BspDI	ATCGAT	1 cut(s)	1741
BspEI	TCCGGA	1 cut(s)	593
BspFNI	CGCG	3 cut(s)	78, 780, 1338
BspLI	GGNNCC	4 cut(s)	492, 856, 999, 1671
BspMI	ACCTGC	2 cut(s)	842, 1961
BspPI	GGATC	4 cut(s)	640, 815, 1206, 1231
BspT107I	GGYRCC	2 cut(s)	854, 1669
BspTNI	GGTCTC	2 cut(s)	630, 1952
BsrBI	CCGCTC	1 cut(s)	1640
BsrI	ACTGG	3 cut(s)	963, 1349, 1887
BssECI	CCNNGG	5 cut(s)	262, 277, 348, 363, 1591
BssMI	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
BssNI	GRCGYC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	1591
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	859, 1449
Bst4CI	ACNGT	8 cut(s)	257, 364, 899, 1137, 1302, 1558, 1684, 1731
Bst6I	CTCTTC	2 cut(s)	386, 1848
BstACI	GRCGYC	1 cut(s)	282
BstAPI	GCANNNNNTGC	3 cut(s)	831, 1541, 1976
BstC8I	GCNNGC	5 cut(s)	137, 296, 1262, 1410, 2016
BstDEI	CTNAG	3 cut(s)	495, 1320, 1816
BstDSI	CCRYGG	2 cut(s)	363, 1591
BstENI	CCTNNNNNAGG	1 cut(s)	1602
BstF5I	GGATG	5 cut(s)	88, 439, 1273, 1896, 2011
BstFNI	CGCG	3 cut(s)	78, 780, 1338
BstHHI	GCGC	2 cut(s)	80, 780
BstKTI	GATC	5 cut(s)	635, 810, 1075, 1201, 1239
BstMAI	GTCTC	6 cut(s)	289, 630, 1564, 1790, 1871, 1952
BstMBI	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
BstMCI	CGRYCG	2 cut(s)	252, 256
BstMWI	GCNNNNNNNGC	9 cut(s)	235, 831, 1270, 1335, 1541, 1848, 1976, 2024, 2090
BstNI	CCWGG	2 cut(s)	859, 1449
BstNSI	RCATGY	4 cut(s)	520, 1412, 1507, 2018
BstSCI	CCNGG	4 cut(s)	262, 857, 1447, 1837
BstUI	CGCG	3 cut(s)	78, 780, 1338
BstV1I	GCAGC	7 cut(s)	330, 691, 1033, 1412, 1528, 1769, 2009
BstX2I	RGATCY	2 cut(s)	807, 1198
BstYI	RGATCY	2 cut(s)	807, 1198
Bsu15I	ATCGAT	1 cut(s)	1741
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	356, 1859
BsuTUI	ATCGAT	1 cut(s)	1741
BtgI	CCRYGG	2 cut(s)	363, 1591
BtrI	CACGTC	1 cut(s)	1520
BtsCI	GGATG	5 cut(s)	88, 439, 1273, 1896, 2011
BtsI	GCAGTG	3 cut(s)	688, 1918, 2034
BtsIMutI	CAGTG	5 cut(s)	688, 904, 1356, 1918, 2034
BveI	ACCTGC	2 cut(s)	842, 1961
Cac8I	GCNNGC	5 cut(s)	137, 296, 1262, 1410, 2016
CfoI	GCGC	2 cut(s)	80, 780
Cfr13I	GGNCC	5 cut(s)	129, 686, 1595, 1858, 1884
ClaI	ATCGAT	1 cut(s)	1741
CseI	GACGC	2 cut(s)	271, 1344
Csp6I	GTAC	6 cut(s)	637, 855, 1159, 1346, 1473, 2107
CviAII	CATG	6 cut(s)	517, 560, 1409, 1504, 1592, 2015
CviQI	GTAC	6 cut(s)	637, 855, 1159, 1346, 1473, 2107
DdeI	CTNAG	3 cut(s)	495, 1320, 1816
DpnI	GATC	5 cut(s)	634, 809, 1074, 1200, 1238
DpnII	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
DraIII	CACNNNGTG	1 cut(s)	1873
Eam1104I	CTCTTC	2 cut(s)	386, 1848
EarI	CTCTTC	2 cut(s)	386, 1848
EciI	GGCGGA	2 cut(s)	38, 791
Ecl136II	GAGCTC	1 cut(s)	944
Eco130I	CCWWGG	1 cut(s)	1591
Eco147I	AGGCCT	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	946
Eco31I	GGTCTC	2 cut(s)	630, 1952
Eco32I	GATATC	2 cut(s)	187, 534
Eco47I	GGWCC	4 cut(s)	129, 686, 1595, 1884
Eco53kI	GAGCTC	1 cut(s)	944
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	944
EcoNI	CCTNNNNNAGG	1 cut(s)	1602
EcoO109I	RGGNCCY	1 cut(s)	1858
EcoRII	CCWGG	2 cut(s)	857, 1447
EcoRV	GATATC	2 cut(s)	187, 534
EcoT14I	CCWWGG	1 cut(s)	1591
EcoT22I	ATGCAT	1 cut(s)	2016
EcoT38I	GRGCYC	1 cut(s)	946
ErhI	CCWWGG	1 cut(s)	1591
Esp3I	CGTCTC	2 cut(s)	289, 1564
FaeI	CATG	6 cut(s)	520, 563, 1412, 1507, 1595, 2018
FalI	AAGNNNNNCTT	2 cut(s)	1845, 1877
FaqI	GGGAC	2 cut(s)	485, 1072
FatI	CATG	6 cut(s)	516, 559, 1408, 1503, 1591, 2014
FauI	CCCGC	1 cut(s)	1916
FblI	GTMKAC	2 cut(s)	252, 1125
FokI	GGATG	5 cut(s)	75, 446, 1260, 1883, 2018
FriOI	GRGCYC	1 cut(s)	946
FspBI	CTAG	7 cut(s)	69, 654, 882, 1140, 1601, 1881, 2110
GlaI	GCGC	2 cut(s)	79, 779
GsaI	CCCAGC	1 cut(s)	1040
GsuI	CTGGAG	6 cut(s)	100, 244, 558, 880, 930, 2001
HaeIII	GGCC	2 cut(s)	356, 1859
HapII	CCGG	7 cut(s)	132, 248, 264, 329, 594, 805, 1838
HgaI	GACGC	2 cut(s)	271, 1344
HhaI	GCGC	2 cut(s)	80, 780
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	6 cut(s)	520, 563, 1412, 1507, 1595, 2018
Hin6I	GCGC	2 cut(s)	78, 778
HinP1I	GCGC	2 cut(s)	78, 778
HincII	GTYRAC	3 cut(s)	253, 964, 1126
HindII	GTYRAC	3 cut(s)	253, 964, 1126
HinfI	GANTC	5 cut(s)	1118, 1523, 1585, 1903, 2066
HpaI	GTTAAC	1 cut(s)	964
HpaII	CCGG	7 cut(s)	132, 248, 264, 329, 594, 805, 1838
HphI	GGTGA	4 cut(s)	352, 730, 889, 1973
Hpy166II	GTNNAC	6 cut(s)	253, 418, 686, 964, 1126, 1291
Hpy8I	GTNNAC	6 cut(s)	253, 418, 686, 964, 1126, 1291
Hpy99I	CGWCG	2 cut(s)	194, 1521
HpyAV	CCTTC	8 cut(s)	20, 154, 367, 944, 1444, 1747, 1871, 1958
HpyCH4III	ACNGT	8 cut(s)	257, 364, 899, 1137, 1302, 1558, 1684, 1731
HpyCH4IV	ACGT	2 cut(s)	198, 1519
HpyF10VI	GCNNNNNNNGC	9 cut(s)	235, 831, 1270, 1335, 1541, 1848, 1976, 2024, 2090
HpyF3I	CTNAG	3 cut(s)	495, 1320, 1816
HpySE526I	ACGT	2 cut(s)	198, 1519
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	520, 563, 1412, 1507, 1595, 2018
HspAI	GCGC	2 cut(s)	78, 778
Kpn2I	TCCGGA	1 cut(s)	593
KpnI	GGTACC	1 cut(s)	858
KspAI	GTTAAC	1 cut(s)	964
Kzo9I	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
LmnI	GCTCC	4 cut(s)	490, 941, 949, 1967
Lsp1109I	GCAGC	7 cut(s)	330, 691, 1033, 1412, 1528, 1769, 2009
LweI	GCATC	6 cut(s)	228, 373, 586, 1033, 1153, 1282
MaeI	CTAG	7 cut(s)	69, 654, 882, 1140, 1601, 1881, 2110
MaeII	ACGT	2 cut(s)	198, 1519
MalI	GATC	5 cut(s)	634, 809, 1074, 1200, 1238
MbiI	CCGCTC	1 cut(s)	1640
MboI	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
MboII	GAAGA	5 cut(s)	403, 903, 1757, 1856, 1865
MflI	RGATCY	2 cut(s)	807, 1198
MhlI	GDGCHC	4 cut(s)	168, 321, 946, 1934
MlyI	GAGTC	2 cut(s)	1517, 2075
MmeI	TCCRAC	3 cut(s)	468, 671, 1162
Mph1103I	ATGCAT	1 cut(s)	2016
MroI	TCCGGA	1 cut(s)	593
MseI	TTAA	2 cut(s)	743, 963
MspA1I	CMGCKG	2 cut(s)	120, 2000
MspI	CCGG	7 cut(s)	132, 248, 264, 329, 594, 805, 1838
MspR9I	CCNGG	4 cut(s)	264, 859, 1449, 1839
MvaI	CCWGG	2 cut(s)	859, 1449
MvnI	CGCG	3 cut(s)	78, 780, 1338
MwoI	GCNNNNNNNGC	9 cut(s)	235, 831, 1270, 1335, 1541, 1848, 1976, 2024, 2090
NciI	CCSGG	2 cut(s)	264, 1839
NcoI	CCATGG	1 cut(s)	1591
NdeII	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
NlaIII	CATG	6 cut(s)	520, 563, 1412, 1507, 1595, 2018
NlaIV	GGNNCC	4 cut(s)	492, 856, 999, 1671
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	7 cut(s)	3, 257, 736, 877, 1042, 1520, 1552
NsiI	ATGCAT	1 cut(s)	2016
NspI	RCATGY	4 cut(s)	520, 1412, 1507, 2018
PaeI	GCATGC	2 cut(s)	1412, 2018
PaeR7I	CTCGAG	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	1118, 1585, 1903
PleI	GAGTC	2 cut(s)	1517, 2074
PpsI	GAGTC	2 cut(s)	1517, 2074
Psp124BI	GAGCTC	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	857, 1447
PspFI	CCCAGC	1 cut(s)	1036
PspGI	CCWGG	2 cut(s)	857, 1447
PspN4I	GGNNCC	4 cut(s)	492, 856, 999, 1671
PspPI	GGNCC	5 cut(s)	129, 686, 1595, 1858, 1884
PspXI	VCTCGAGB	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	807, 1198
PvuII	CAGCTG	1 cut(s)	2000
RsaI	GTAC	6 cut(s)	638, 856, 1160, 1347, 1474, 2108
RsaNI	GTAC	6 cut(s)	637, 855, 1159, 1346, 1473, 2107
SacI	GAGCTC	1 cut(s)	946
SalI	GTCGAC	2 cut(s)	251, 1124
SaqAI	TTAA	2 cut(s)	743, 963
Sau3AI	GATC	5 cut(s)	632, 807, 1072, 1198, 1236
Sau96I	GGNCC	5 cut(s)	129, 686, 1595, 1858, 1884
ScaI	AGTACT	1 cut(s)	2108
SchI	GAGTC	2 cut(s)	1517, 2075
ScrFI	CCNGG	4 cut(s)	264, 859, 1449, 1839
SduI	GDGCHC	4 cut(s)	168, 321, 946, 1934
SfaNI	GCATC	6 cut(s)	228, 373, 586, 1033, 1153, 1282
Sfr274I	CTCGAG	1 cut(s)	320
SinI	GGWCC	4 cut(s)	129, 686, 1595, 1884
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	5 cut(s)	299, 320, 522, 627, 1278
SmoI	CTYRAG	5 cut(s)	299, 320, 522, 627, 1278
SphI	GCATGC	2 cut(s)	1412, 2018
SseBI	AGGCCT	1 cut(s)	356
SspMI	CTAG	7 cut(s)	69, 654, 882, 1140, 1601, 1881, 2110
SstI	GAGCTC	1 cut(s)	946
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	4 cut(s)	262, 857, 1447, 1837
StyI	CCWWGG	1 cut(s)	1591
TaaI	ACNGT	8 cut(s)	257, 364, 899, 1137, 1302, 1558, 1684, 1731
TaiI	ACGT	2 cut(s)	201, 1522
TaqI	TCGA	6 cut(s)	252, 321, 1125, 1420, 1516, 1741
TatI	WGTACW	2 cut(s)	1472, 2106
TauI	GCSGC	5 cut(s)	75, 78, 99, 123, 1643
TfiI	GAWTC	3 cut(s)	1118, 1585, 1903
Tru1I	TTAA	2 cut(s)	743, 963
Tru9I	TTAA	2 cut(s)	743, 963
TscAI	CASTG	5 cut(s)	688, 904, 1356, 1918, 2034
TseFI	GTSAC	7 cut(s)	3, 257, 736, 877, 1042, 1520, 1552
TseI	GCWGC	7 cut(s)	343, 704, 1021, 1425, 1541, 1757, 1997
Tsp45I	GTSAC	7 cut(s)	3, 257, 736, 877, 1042, 1520, 1552
TspDTI	ATGAA	2 cut(s)	466, 1104
TspGWI	ACGGA	2 cut(s)	981, 1884
TspRI	CASTG	5 cut(s)	688, 904, 1356, 1918, 2034
VpaK11BI	GGWCC	4 cut(s)	129, 686, 1595, 1884
XagI	CCTNNNNNAGG	1 cut(s)	1602
XapI	RAATTY	6 cut(s)	410, 641, 722, 1625, 1660, 2039
XceI	RCATGY	4 cut(s)	520, 1412, 1507, 2018
XhoI	CTCGAG	1 cut(s)	320
XmiI	GTMKAC	2 cut(s)	252, 1125
XspI	CTAG	7 cut(s)	69, 654, 882, 1140, 1601, 1881, 2110
ZrmI	AGTACT	1 cut(s)	2108
Zsp2I	ATGCAT	1 cut(s)	2016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.