Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010174

Physical Location & Seq

Genomic Coordinates Reverse (-)

38321520 .. 38330487

Gene Structure 8968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAGAAGAAGATTATCTTCCACCTCACTTCGGCGTCAACATTGGGTCGGAAGCTCAAAGACCCTCAACTCTCGGCGACCCGAAGCCCGGGAAGCCACGAACCACCGCGAAGCCAAAGCCGAGAAGAAGAAGATGACCAACTCAGCGAAAATTGGAGGAAGAGATTGCAGAATCTAAAAGGAAGAAGAAGAAGAGAACGAAGAAGGAGAAGATGCGGAGCTGCAGCCGGCTTGAGACCGGTGCTGCACTGCTCGGCTTTTAGGAGGAAATTGATAGAGTTGCAGCTGGGCACGGGCGTGGCAGCGAAAGTAGAGGAGAAGGATGGCACGTTGAATGGGGATGCACACAACAATTCTCCTTATTTAATCAAGGTTGAGCTGTTAGCTGCTAAGAATCTTATCGGTGCAAACTTAAATAGCACATCTTCTCGGGCGAATATGGGTGATGAGAAATCTCTTCCAAGCAAATGGGTGAAGAGTATTCCCTTCAAGGGAAATCCAAGTGATGAGTGGAATTCAAGTGAGGAAAAATTCTCTCAAGATGAATCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 DUF4782 GRAM

Protein Analysis

184

Amino Acids

20.67

Weight (kDa)

10.09

Isoelectric Point (pI)

73.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59660 AT3G59660
fragaria_vesca	FvH4_3g33330
malus_domestica	MD00G1149500.v1.1
prunus_persica	Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1
pyrus_communis	pycom13g26060
rosa_chinensis	RchiOBHm_Chr5g0060731
rosa_laevigata	RLG00000035392
rosa_roxburghii	Rroxscaffold_1G00019990 Rroxscaffold_3G00245380 Rroxscaffold_3G00245390
rosa_rugosa	Rorug05G0333300
rosa_samantha	Rh5AG396200 Rh5BG408300 Rh5CG433000 Rh5DG423400
rosa_wichuraiana	Rw5G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	109
AciI	CCGC	2 cut(s)	107, 216
AcsI	RAATTY	2 cut(s)	514, 530
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	31, 88, 491
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	334, 490, 519
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	5 cut(s)	55, 221, 286, 379, 386
AluI	AGCT	5 cut(s)	55, 221, 286, 379, 386
Alw26I	GTCTC	1 cut(s)	229
Ama87I	CYCGRG	2 cut(s)	88, 429
ApeKI	GCWGC	6 cut(s)	221, 224, 244, 283, 302, 386
ApoI	RAATTY	2 cut(s)	514, 530
AsiGI	ACCGGT	1 cut(s)	238
AsuC2I	CCSGG	2 cut(s)	89, 90
AsuHPI	GGTGA	2 cut(s)	455, 484
AvaI	CYCGRG	2 cut(s)	88, 429
BaeGI	GKGCMC	1 cut(s)	293
BbvI	GCAGC	6 cut(s)	208, 231, 236, 295, 314, 373
BccI	CCATC	1 cut(s)	317
BcnI	CCSGG	2 cut(s)	89, 90
BcoDI	GTCTC	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	6 cut(s)	222, 225, 245, 284, 303, 387
BlsI	GCNGC	6 cut(s)	223, 226, 246, 285, 304, 388
Bme1390I	CCNGG	2 cut(s)	89, 90
BmeT110I	CYCGRG	2 cut(s)	88, 429
BmrFI	CCNGG	2 cut(s)	89, 90
BmsI	GCATC	2 cut(s)	203, 331
BpuEI	CTTGAG	2 cut(s)	253, 522
BpuMI	CCSGG	2 cut(s)	89, 90
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 88, 491
Bse118I	RCCGGY	2 cut(s)	227, 238
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	328, 346
BseLI	CCNNNNNNNGG	3 cut(s)	31, 88, 491
BseMII	CTCAG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	6 cut(s)	208, 231, 236, 295, 314, 373
BseYI	CCCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	109
BshTI	ACCGGT	1 cut(s)	238
BsiHKCI	CYCGRG	2 cut(s)	88, 429
BsiSI	CCGG	3 cut(s)	89, 228, 239
BslI	CCNNNNNNNGG	3 cut(s)	31, 88, 491
BsmAI	GTCTC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	2 cut(s)	88, 429
Bsp1286I	GDGCHC	1 cut(s)	293
BspACI	CCGC	2 cut(s)	107, 216
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	229
BsrFI	RCCGGY	2 cut(s)	227, 238
BssAI	RCCGGY	2 cut(s)	227, 238
BssECI	CCNNGG	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	35
Bst6I	CTCTTC	4 cut(s)	155, 187, 462, 470
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	143, 390
BstF5I	GGATG	2 cut(s)	328, 346
BstFNI	CGCG	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	87, 88
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	6 cut(s)	208, 231, 236, 295, 314, 373
BstXI	CCANNNNNNTGG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	328, 346
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	229
Cfr10I	RCCGGY	2 cut(s)	227, 238
Cfr9I	CCCGGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	24
CspAI	ACCGGT	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	143, 390
Eam1104I	CTCTTC	4 cut(s)	155, 187, 462, 470
EarI	CTCTTC	4 cut(s)	155, 187, 462, 470
Eco31I	GGTCTC	1 cut(s)	229
Eco88I	CYCGRG	2 cut(s)	88, 429
EcoRI	GAATTC	1 cut(s)	514
FaiI	YATR	1 cut(s)	440
FalI	AAGNNNNNCTT	1 cut(s)	34
Fnu4HI	GCNGC	6 cut(s)	222, 225, 245, 284, 303, 387
FokI	GGATG	2 cut(s)	335, 353
Fsp4HI	GCNGC	6 cut(s)	222, 225, 245, 284, 303, 387
GluI	GCNGC	6 cut(s)	222, 225, 245, 284, 303, 387
GsaI	CCCAGC	1 cut(s)	290
HapII	CCGG	3 cut(s)	89, 228, 239
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	172, 394, 545
HpaII	CCGG	3 cut(s)	89, 228, 239
HphI	GGTGA	2 cut(s)	455, 484
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	539, 549
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	198, 313, 496
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	6 cut(s)	169, 224, 247, 283, 344, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	2 cut(s)	143, 390
HpySE526I	ACGT	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	35
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	5 cut(s)	102, 241, 252, 272, 534
Lsp1109I	GCAGC	6 cut(s)	208, 231, 236, 295, 314, 373
LweI	GCATC	2 cut(s)	203, 331
MaeII	ACGT	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	5 cut(s)	151, 269, 352, 514, 530
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	6 cut(s)	35, 75, 150, 258, 307, 517
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	2 cut(s)	365, 413
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	3 cut(s)	89, 228, 239
MspR9I	CCNGG	2 cut(s)	89, 90
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	93
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	2 cut(s)	89, 90
NgoMIV	GCCGGC	1 cut(s)	227
NmeAIII	GCCGAG	3 cut(s)	53, 146, 233
OliI	CACNNNNGTG	1 cut(s)	296
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	172, 394, 545
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	223, 226, 246, 285, 304, 388
PspFI	CCCAGC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	365, 413
SatI	GCNGC	6 cut(s)	222, 225, 245, 284, 303, 387
ScrFI	CCNGG	2 cut(s)	89, 90
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	8 cut(s)	27, 57, 223, 288, 332, 375, 381, 388
SfaNI	GCATC	2 cut(s)	203, 331
SfcI	CTRYAG	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	232, 537
SmoI	CTYRAG	2 cut(s)	232, 537
Sse9I	AATT	5 cut(s)	151, 269, 352, 514, 530
SsiI	CCGC	2 cut(s)	107, 216
StyD4I	CCNGG	2 cut(s)	87, 88
TaiI	ACGT	1 cut(s)	332
TasI	AATT	5 cut(s)	151, 269, 352, 514, 530
TfiI	GAWTC	3 cut(s)	172, 394, 545
Tru1I	TTAA	2 cut(s)	365, 413
Tru9I	TTAA	2 cut(s)	365, 413
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	6 cut(s)	221, 224, 244, 283, 302, 386
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	88
TspRI	CASTG	1 cut(s)	254
XapI	RAATTY	2 cut(s)	514, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XmaI	CCCGGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.