Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010174

Physical Location & Seq

Genomic Coordinates Reverse (-)

38330853 .. 38331143

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCGGAGCTGCAGCCGGCTTGAGGGCGGTGCTGCCTTGCTCGGCTTTTGGGAGGAAATTGATAGAGTTGCGGTGGGCACGGGCGTGGCGGCGAAAGTAGAGGAGAAGGATGGCACGTTGAATGGGGATGCACACAACAATTCTCCTTATTTAATCAAGGTTGAGCTGTTAGCTGCTAAGAATCTTATCGGTGCAAACTTAAATAGCACGTCGGACCCATGTGCTATCATCACATGTGGAACAGAAAAGCGATTTAGTTCAATGGTCCCTGGTTCAAGAATTTCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 DUF4782 GRAM

Protein Analysis

96

Amino Acids

10.13

Weight (kDa)

5.75

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59660 AT3G59660
fragaria_vesca	FvH4_3g33330
malus_domestica	MD00G1149500.v1.1
prunus_persica	Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1 Prupe.1G207300_v2.0.a1
pyrus_communis	pycom13g26060
rosa_chinensis	RchiOBHm_Chr5g0060731
rosa_laevigata	RLG00000035392
rosa_roxburghii	Rroxscaffold_1G00019990 Rroxscaffold_3G00245380 Rroxscaffold_3G00245390
rosa_rugosa	Rorug05G0333300
rosa_samantha	Rh5AG396200 Rh5BG408300 Rh5CG433000 Rh5DG423400
rosa_wichuraiana	Rw5G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	4, 27, 71, 89
AcsI	RAATTY	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	121, 261, 276
AjiI	CACGTC	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	268
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	3 cut(s)	9, 166, 173
AluI	AGCT	3 cut(s)	9, 166, 173
ApeKI	GCWGC	4 cut(s)	9, 12, 32, 173
ApoI	RAATTY	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	214, 265
AvaII	GGWCC	2 cut(s)	214, 265
BaeGI	GKGCMC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	19, 24, 160
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	10
BisI	GCNGC	5 cut(s)	10, 13, 33, 90, 174
BlsI	GCNGC	5 cut(s)	11, 14, 34, 91, 175
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	2 cut(s)	214, 265
BmgBI	CACGTC	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	214, 265
BmiI	GGNNCC	2 cut(s)	216, 267
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	115, 133
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	19, 24, 160
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	80
BspACI	CCGC	4 cut(s)	4, 27, 71, 89
BspLI	GGNNCC	2 cut(s)	216, 267
BspMAI	CTGCAG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	115, 133
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	19, 24, 160
BtrI	CACGTC	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	115, 133
Cac8I	GCNNGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	214, 265
CviAII	CATG	3 cut(s)	219, 234, 286
CviJI	RGCY	6 cut(s)	9, 15, 19, 45, 166, 173
CviKI_1	RGCY	6 cut(s)	9, 15, 19, 45, 166, 173
DdeI	CTNAG	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	214, 265
EcoRII	CCWGG	1 cut(s)	268
FaeI	CATG	3 cut(s)	222, 237, 289
FaiI	YATR	3 cut(s)	220, 235, 287
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	218, 233, 285
Fnu4HI	GCNGC	5 cut(s)	10, 13, 33, 90, 174
FokI	GGATG	2 cut(s)	122, 140
Fsp4HI	GCNGC	5 cut(s)	10, 13, 33, 90, 174
GluI	GCNGC	5 cut(s)	10, 13, 33, 90, 174
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	3 cut(s)	222, 237, 289
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	276
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	116, 209
HpyCH4V	TGCA	3 cut(s)	12, 131, 194
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	116, 209
Hsp92II	CATG	3 cut(s)	222, 237, 289
KroI	GCCGGC	1 cut(s)	15
KroNI	GCCGGC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	3 cut(s)	29, 255, 282
Lsp1109I	GCAGC	3 cut(s)	19, 24, 160
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	2 cut(s)	116, 209
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	57, 139, 279
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	3 cut(s)	16, 46, 94
MroNI	GCCGGC	1 cut(s)	15
MseI	TTAA	2 cut(s)	152, 200
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
NaeI	GCCGGC	1 cut(s)	17
NgoMIV	GCCGGC	1 cut(s)	15
NlaIII	CATG	3 cut(s)	222, 237, 289
NlaIV	GGNNCC	2 cut(s)	216, 267
NmeAIII	GCCGAG	1 cut(s)	21
NspI	RCATGY	1 cut(s)	237
OliI	CACNNNNGTG	1 cut(s)	83
PciI	ACATGT	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	11, 14, 34, 91, 175
PscI	ACATGT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	216, 267
PspPI	GGNCC	2 cut(s)	214, 265
PstI	CTGCAG	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	152, 200
SatI	GCNGC	5 cut(s)	10, 13, 33, 90, 174
Sau96I	GGNCC	2 cut(s)	214, 265
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	6 cut(s)	11, 119, 162, 168, 175, 212
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	214, 265
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	57, 139, 279
SsiI	CCGC	4 cut(s)	4, 27, 71, 89
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	2 cut(s)	119, 212
TasI	AATT	3 cut(s)	57, 139, 279
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	152, 200
Tru9I	TTAA	2 cut(s)	152, 200
TseI	GCWGC	4 cut(s)	9, 12, 32, 173
VpaK11BI	GGWCC	2 cut(s)	214, 265
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.