Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0021399

Physical Location & Seq

Genomic Coordinates Reverse (-)

49790714 .. 49793237

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAGCTTCGAGTACTACCCCAAACTCACCTACTCGACCGCCTCCTCCGCGGCCGCAAGCTCGTCGAATCCAATGACACCCTCGCTTTCTCCGACGACAACTCCACTTTTCATATCACCTCTTTGGGATATTTGCCTTATACACTGGTGCAATTGGGGATGCCTGGAATGAAGTTTATGGTGGCGCTTGATAGCGGGAGTGACCTGTTTAGGGTGCCTTGTGAAGGTATTCTTCTTTACCAGGTAGTATCCAATCTTGAACTTATTGTTCTTCTTCTTGTGCTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

96

Amino Acids

10.79

Weight (kDa)

6.02

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021399)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404551
rosa_roxburghii	Rroxscaffold_3G00255500
rosa_rugosa	Rorug05G0202500
rosa_samantha	Rh2DG252600 Rh2DG252800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	51
AciI	CCGC	5 cut(s)	40, 49, 51, 55, 195
AcoI	YGGCCR	1 cut(s)	52
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	211, 224
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	2 cut(s)	163, 240
AluBI	AGCT	2 cut(s)	7, 61
AluI	AGCT	2 cut(s)	7, 61
Alw21I	GWGCWC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	20, 109
BanI	GGYRCC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	285
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	165, 242
BciVI	GTATCC	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	2 cut(s)	52, 55
BlsI	GCNGC	2 cut(s)	53, 56
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	165, 242
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	165, 242
BmsI	GCATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 224
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	165, 242
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	211, 224
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	2 cut(s)	40, 55
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	2 cut(s)	40, 55
BsiHKAI	GWGCWC	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	211, 224
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	285
BspACI	CCGC	5 cut(s)	40, 49, 51, 55, 195
BspANI	GGCC	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	165, 242
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstMCI	CGRYCG	2 cut(s)	40, 55
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNI	CCWGG	2 cut(s)	165, 242
BstSCI	CCNGG	2 cut(s)	163, 240
BstUI	CGCG	1 cut(s)	51
BstZI	CGGCCG	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	59
CciNI	GCGGCCGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	52
CsiI	ACCWGGT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	14
CviJI	RGCY	3 cut(s)	7, 54, 61
CviKI_1	RGCY	3 cut(s)	7, 54, 61
CviQI	GTAC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	52
Eco52I	CGGCCG	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	163, 240
FaiI	YATR	3 cut(s)	114, 141, 179
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	52, 55
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	52, 55
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	52, 55
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	1 cut(s)	68
HphI	GGTGA	2 cut(s)	20, 109
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	257
Hpy99I	CGWCG	2 cut(s)	68, 98
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HspAI	GCGC	1 cut(s)	185
KspI	CCGCGG	1 cut(s)	52
LpnPI	CCDG	6 cut(s)	131, 150, 177, 218, 227, 254
LweI	GCATC	1 cut(s)	150
MabI	ACCWGGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	3 cut(s)	224, 263, 266
MfeI	CAATTG	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	53, 56, 92, 130
MroXI	GAANNNNTTC	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	165, 242
MunI	CAATTG	1 cut(s)	152
MvaI	CCWGG	2 cut(s)	165, 242
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	200
NotI	GCGGCCGC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	53, 56
Psp6I	CCWGG	2 cut(s)	163, 240
PspGI	CCWGG	2 cut(s)	163, 240
PspN4I	GGNNCC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SacII	CCGCGG	1 cut(s)	52
SatI	GCNGC	2 cut(s)	52, 55
ScaI	AGTACT	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	165, 242
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	9, 33, 63, 122, 207, 229, 246
SexAI	ACCWGGT	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	150
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	5 cut(s)	40, 49, 51, 55, 195
StyD4I	CCNGG	2 cut(s)	163, 240
TaqI	TCGA	3 cut(s)	10, 36, 66
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	2 cut(s)	54, 57
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	17, 101, 185
TspRI	CASTG	1 cut(s)	150
XagI	CCTNNNNNAGG	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.