Rorug05G0202500

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
20117384 .. 20119335
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0202500.1

Sequence Viewer

Length: 1470 bp
ATGGCTTGTGAGTCCAAGCGTCAAAATGGAGTTGATAGAATCAGTGAATTGCCGGATGCAGTTCTTTGCCACATACTTTCCTTTCTTCCTACAATATATGCTATGTGGACCACTGTTCTGTCTAGGAGATGGAATAATTTATGGACATCTCTTCCAAACCTTGGCTTTGATAACAAAGATTTTCCTACAAATCATACAATGTCTTCGATCCAGTCCTTCAATCGTTTTATGACTGCTGTTGAAGATGCACTTTCCCTTCACCGCTTATCAGACATTCGAAAGTTTTCTCTTTCCATTTCTGTAGTACACTTCAGTGTCGAGGATCTCTCTCGAATCAATAATTTGATTTGTTCTGCCATTAGGCATAATGTTGTCGAAATGAATCTTTCTTTCTGGGCTGAAGATTATATGAAGGATCCTTTTGTACTGCCTCAAAGCCTTTTCATGTGCCCAACACTGGAGGATCTGACAGTCTTTTCAGATTTTAATACTTGTGCTCCAACCGCAACAGGGAGTCTCCCAAGTCTCAAGGTTCTCCATGTTTCAGTTTTATGGTCTGATGAGAATGCACCAGAATCTTTTTTTCGGAACTGCCCTGTACTTGAAGATTTAACTATAGCTGGAAGAATCTGTTTTCATGACATTGACTGTATCAATATCACTGCACTTGCATTGAAGAGGCTACGAATATCGTTGCGCTGTTTCATTGAATGGTATGATAGTTGGTACACTTTTTCTATTTATGCTCCAAGCATGGAATACTTTGAACTCGAGGAGGATGCTTTCTCAAATTATATTTTCAAGAGTACTAAATCTCTAGTCAAAGCCAAAGTCCATTTTCTTGACGAAATTCAATACCAAGATGAGATGGGAGTCTTTTATGATAAAGATCCTGGATTCGCGAATCGTGCAACTGTGTTGCTGGCAGGAATTTCCAATGTTGAATATCTGTCTCTTGATAACCAGCCTCATTGTATGGAGGCTTGCTATGTGCCTGCTTTGGAAAATCTGACCAAATTGAAGCTGGTTCTTCGTGACTGCTACCACTGGGAATTGCTTACAGAGTTGATCATCAGATCCCCTAAACTGAAATATCTTGTCTTAGAGCATATTCACACAAATGTGGATAACAAATACCCAGAGGAATCAGAAAGTCGATGGAATCCACCAGACTTTGTGCCTATTTGTTTGCTCTCACGCCTTAAGACAATCAAAATAAGGGGATTCAAAGGAAAGCGTGATGAGATGGAAGTGGCACAATATTTGCTACAGAACAGTGATGTTTTGAATGAGATGGCTATTAATACAGGTGATCTTCAGTGTACAAAGGAGGAGTTAATTGAGGAATTTGGCCTGGGCTCGGGTCGGGCCGGGCCGGGCCCGAAAATTAGTAAGACCGAGCCCGAAACTGTAATACCCCGGAAAATCCAAATTAAATTCCGTGGATTTTTAGAAATGATTTCACGATAG

Protein Analysis

489

Amino Acids

56.29

Weight (kDa)

5.42

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 52 5.6e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 85 - 438 2.5e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 121 - 231 8.1e-08 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 390 - 434 3.7e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021399)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0404551
rosa_roxburghii Rroxscaffold_3G00255500
rosa_rugosa Rorug05G0202500
rosa_samantha Rh2DG252600 Rh2DG252800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 161
AccII CGCG 1 cut(s) 902
AciI CCGC 2 cut(s) 262, 504
AclWI GGATC 7 cut(s) 202, 330, 410, 423, 471, 884, 1071
AcsI RAATTY 4 cut(s) 849, 930, 1346, 1436
AcuI CTGAAG 3 cut(s) 295, 420, 1301
AfaI GTAC 6 cut(s) 306, 426, 600, 728, 808, 1324
AfiI CCNNNNNNNGG 4 cut(s) 161, 457, 510, 1360
AflII CTTAAG 1 cut(s) 1202
AjnI CCWGG 2 cut(s) 892, 1353
AleI CACNNNNGTG 2 cut(s) 312, 1121
AluBI AGCT 2 cut(s) 620, 1024
AluI AGCT 2 cut(s) 620, 1024
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 3 cut(s) 521, 530, 957
AlwI GGATC 7 cut(s) 202, 330, 410, 423, 471, 884, 1071
Ama87I CYCGRG 2 cut(s) 770, 1360
AoxI GGCC 4 cut(s) 1351, 1368, 1373, 1378
ApaI GGGCCC 1 cut(s) 1382
ApoI RAATTY 4 cut(s) 849, 930, 1346, 1436
ArsI GACNNNNNNTTYG 2 cut(s) 816, 848
AseI ATTAAT 1 cut(s) 1302
Asp700I GAANNNNTTC 1 cut(s) 283
AspLEI GCGC 1 cut(s) 699
AspS9I GGNCC 5 cut(s) 108, 1368, 1373, 1378, 1379
AsuC2I CCSGG 3 cut(s) 1372, 1377, 1420
AsuHPI GGTGA 2 cut(s) 251, 1322
AsuII TTCGAA 1 cut(s) 277
AvaI CYCGRG 2 cut(s) 770, 1360
AvaII GGWCC 1 cut(s) 108
BaeGI GKGCMC 2 cut(s) 452, 1382
BamHI GGATCC 1 cut(s) 415
BanII GRGCYC 3 cut(s) 1361, 1382, 1404
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 499
BccI CCATC 5 cut(s) 123, 862, 1152, 1240, 1288
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 2 cut(s) 894, 1355
BclI TGATCA 1 cut(s) 1068
BcnI CCSGG 3 cut(s) 1372, 1377, 1420
BcoDI GTCTC 3 cut(s) 521, 530, 957
BfaI CTAG 2 cut(s) 123, 818
BfmI CTRYAG 3 cut(s) 300, 615, 1268
BfrI CTTAAG 1 cut(s) 1202
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 5 cut(s) 894, 1355, 1372, 1377, 1420
Bme18I GGWCC 1 cut(s) 108
BmeT110I CYCGRG 2 cut(s) 770, 1360
BmgT120I GGNCC 5 cut(s) 108, 1368, 1373, 1378, 1379
BmiI GGNNCC 2 cut(s) 417, 1380
BmrFI CCNGG 5 cut(s) 894, 1355, 1372, 1377, 1420
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 3 cut(s) 46, 235, 769
BmuI ACTGGG 1 cut(s) 1057
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 479
Bpu14I TTCGAA 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 3 cut(s) 1372, 1377, 1420
BsaBI GATNNNNATC 1 cut(s) 888
BsaJI CCNNGG 4 cut(s) 160, 1354, 1418, 1441
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 457, 510, 1360
Bse1I ACTGG 3 cut(s) 211, 462, 1052
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 2 cut(s) 894, 1355
BseDI CCNNGG 4 cut(s) 160, 1354, 1418, 1441
BseGI GGATG 2 cut(s) 61, 784
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 4 cut(s) 161, 457, 510, 1360
BseNI ACTGG 3 cut(s) 211, 462, 1052
BseRI GAGGAG 2 cut(s) 788, 1346
BseSI GKGCMC 2 cut(s) 452, 1382
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 902
BshFI GGCC 4 cut(s) 1353, 1370, 1375, 1380
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 2 cut(s) 770, 1360
BsiSI CCGG 4 cut(s) 53, 1371, 1376, 1420
BslI CCNNNNNNNGG 4 cut(s) 161, 457, 510, 1360
BsmAI GTCTC 3 cut(s) 521, 530, 957
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 4 cut(s) 1353, 1370, 1375, 1380
BsoBI CYCGRG 2 cut(s) 770, 1360
Bsp119I TTCGAA 1 cut(s) 277
Bsp120I GGGCCC 1 cut(s) 1378
Bsp1286I GDGCHC 5 cut(s) 452, 499, 1361, 1382, 1404
Bsp1407I TGTACA 1 cut(s) 1322
Bsp143I GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
Bsp68I TCGCGA 1 cut(s) 902
BspACI CCGC 2 cut(s) 262, 504
BspANI GGCC 4 cut(s) 1353, 1370, 1375, 1380
BspFNI CGCG 1 cut(s) 902
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 417, 1380
BspPI GGATC 7 cut(s) 202, 330, 410, 423, 471, 884, 1071
BspT104I TTCGAA 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 1202
BsrGI TGTACA 1 cut(s) 1322
BsrI ACTGG 3 cut(s) 211, 462, 1052
BssECI CCNNGG 4 cut(s) 160, 1354, 1418, 1441
BssMI GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 894, 1355
Bst4CI ACNGT 6 cut(s) 115, 472, 650, 916, 1277, 1411
Bst6I CTCTTC 2 cut(s) 156, 671
BstAFI CTTAAG 1 cut(s) 1202
BstAUI TGTACA 1 cut(s) 1322
BstBI TTCGAA 1 cut(s) 277
BstC8I GCNNGC 3 cut(s) 924, 985, 996
BstDEI CTNAG 1 cut(s) 1102
BstDSI CCRYGG 1 cut(s) 1441
BstF5I GGATG 2 cut(s) 61, 784
BstFNI CGCG 1 cut(s) 902
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 8 cut(s) 210, 325, 418, 466, 892, 1071, 1079, 1315
BstMAI GTCTC 3 cut(s) 521, 530, 957
BstMBI GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
BstMWI GCNNNNNNNGC 2 cut(s) 503, 908
BstNI CCWGG 2 cut(s) 894, 1355
BstSCI CCNGG 5 cut(s) 892, 1353, 1370, 1375, 1418
BstSFI CTRYAG 3 cut(s) 300, 615, 1268
BstSLI GKGCMC 2 cut(s) 452, 1382
BstUI CGCG 1 cut(s) 902
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 5 cut(s) 322, 415, 463, 889, 1076
BstYI RGATCY 5 cut(s) 322, 415, 463, 889, 1076
BsuRI GGCC 4 cut(s) 1353, 1370, 1375, 1380
BtgI CCRYGG 1 cut(s) 1441
BtsCI GGATG 2 cut(s) 61, 784
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 8 cut(s) 49, 111, 319, 455, 660, 1045, 1282, 1325
BtuMI TCGCGA 1 cut(s) 902
Cac8I GCNNGC 3 cut(s) 924, 985, 996
CciI TCATGA 1 cut(s) 637
CfoI GCGC 1 cut(s) 699
Cfr13I GGNCC 5 cut(s) 108, 1368, 1373, 1378, 1379
CseI GACGC 1 cut(s) 8
Csp6I GTAC 6 cut(s) 305, 425, 599, 727, 807, 1323
CviAII CATG 4 cut(s) 445, 539, 638, 754
CviQI GTAC 6 cut(s) 305, 425, 599, 727, 807, 1323
DdeI CTNAG 1 cut(s) 1102
DpnI GATC 8 cut(s) 209, 324, 417, 465, 891, 1070, 1078, 1314
DpnII GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
Eam1104I CTCTTC 2 cut(s) 156, 671
EarI CTCTTC 2 cut(s) 156, 671
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 3 cut(s) 1361, 1382, 1404
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 3 cut(s) 295, 420, 1301
Eco88I CYCGRG 2 cut(s) 770, 1360
EcoRII CCWGG 2 cut(s) 892, 1353
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 3 cut(s) 1361, 1382, 1404
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 4 cut(s) 448, 542, 641, 757
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 4 cut(s) 444, 538, 637, 753
FbaI TGATCA 1 cut(s) 1068
FokI GGATG 2 cut(s) 68, 791
FriOI GRGCYC 3 cut(s) 1361, 1382, 1404
FspBI CTAG 2 cut(s) 123, 818
GlaI GCGC 1 cut(s) 698
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 4 cut(s) 1353, 1370, 1375, 1380
HapII CCGG 4 cut(s) 53, 1371, 1376, 1420
HgaI GACGC 1 cut(s) 8
HhaI GCGC 1 cut(s) 699
Hin1II CATG 4 cut(s) 448, 542, 641, 757
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HpaII CCGG 4 cut(s) 53, 1371, 1376, 1420
HphI GGTGA 2 cut(s) 251, 1322
Hpy166II GTNNAC 4 cut(s) 108, 307, 729, 1323
Hpy188I TCNGA 8 cut(s) 271, 468, 481, 559, 588, 1011, 1076, 1150
Hpy188III TCNNGA 8 cut(s) 330, 638, 802, 842, 901, 956, 1034, 1464
Hpy8I GTNNAC 4 cut(s) 108, 307, 729, 1323
HpyAV CCTTC 3 cut(s) 226, 266, 406
HpyCH4III ACNGT 6 cut(s) 115, 472, 650, 916, 1277, 1411
HpyCH4V TGCA 6 cut(s) 59, 248, 569, 665, 671, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 908
HpyF3I CTNAG 1 cut(s) 1102
Hsp92II CATG 4 cut(s) 448, 542, 641, 757
HspAI GCGC 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 1068
Kzo9I GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
LmnI GCTCC 2 cut(s) 502, 751
LweI GCATC 3 cut(s) 46, 235, 769
MaeI CTAG 2 cut(s) 123, 818
MaeIII GTNAC 1 cut(s) 1034
MalI GATC 8 cut(s) 209, 324, 417, 465, 891, 1070, 1078, 1314
MboI GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
MflI RGATCY 5 cut(s) 322, 415, 463, 889, 1076
MhlI GDGCHC 5 cut(s) 452, 499, 1361, 1382, 1404
MlyI GAGTC 3 cut(s) 20, 523, 882
MmeI TCCRAC 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 6 cut(s) 486, 611, 1203, 1302, 1337, 1434
MslI CAYNNNNRTG 3 cut(s) 312, 1119, 1121
MspCI CTTAAG 1 cut(s) 1202
MspI CCGG 4 cut(s) 53, 1371, 1376, 1420
MspR9I CCNGG 5 cut(s) 894, 1355, 1372, 1377, 1420
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 2 cut(s) 894, 1355
MvnI CGCG 1 cut(s) 902
MwoI GCNNNNNNNGC 2 cut(s) 503, 908
NciI CCSGG 3 cut(s) 1372, 1377, 1420
NdeII GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
NlaIII CATG 4 cut(s) 448, 542, 641, 757
NlaIV GGNNCC 2 cut(s) 417, 1380
NmuCI GTSAC 1 cut(s) 1034
NruI TCGCGA 1 cut(s) 902
NspV TTCGAA 1 cut(s) 277
OliI CACNNNNGTG 2 cut(s) 312, 1121
PaeR7I CTCGAG 1 cut(s) 770
PagI TCATGA 1 cut(s) 637
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 892
PleI GAGTC 3 cut(s) 19, 522, 881
PpsI GAGTC 3 cut(s) 19, 522, 881
PshBI ATTAAT 1 cut(s) 1302
Psp6I CCWGG 2 cut(s) 892, 1353
PspGI CCWGG 2 cut(s) 892, 1353
PspN4I GGNNCC 2 cut(s) 417, 1380
PspOMI GGGCCC 1 cut(s) 1378
PspPI GGNCC 5 cut(s) 108, 1368, 1373, 1378, 1379
PspXI VCTCGAGB 1 cut(s) 770
PsuI RGATCY 5 cut(s) 322, 415, 463, 889, 1076
RruI TCGCGA 1 cut(s) 902
RsaI GTAC 6 cut(s) 306, 426, 600, 728, 808, 1324
RsaNI GTAC 6 cut(s) 305, 425, 599, 727, 807, 1323
RseI CAYNNNNRTG 3 cut(s) 312, 1119, 1121
SaqAI TTAA 6 cut(s) 486, 611, 1203, 1302, 1337, 1434
Sau3AI GATC 8 cut(s) 207, 322, 415, 463, 889, 1068, 1076, 1312
Sau96I GGNCC 5 cut(s) 108, 1368, 1373, 1378, 1379
ScaI AGTACT 1 cut(s) 808
SchI GAGTC 3 cut(s) 20, 523, 882
ScrFI CCNGG 5 cut(s) 894, 1355, 1372, 1377, 1420
SduI GDGCHC 5 cut(s) 452, 499, 1361, 1382, 1404
SetI ASST 5 cut(s) 162, 534, 622, 1026, 1312
SfaNI GCATC 3 cut(s) 46, 235, 769
SfcI CTRYAG 3 cut(s) 300, 615, 1268
Sfr274I CTCGAG 1 cut(s) 770
SfuI TTCGAA 1 cut(s) 277
SinI GGWCC 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 770
SmiMI CAYNNNNRTG 3 cut(s) 312, 1119, 1121
SmlI CTYRAG 3 cut(s) 527, 770, 1202
SmoI CTYRAG 3 cut(s) 527, 770, 1202
SsiI CCGC 2 cut(s) 262, 504
SspI AATATT 1 cut(s) 1262
SspMI CTAG 2 cut(s) 123, 818
StyD4I CCNGG 5 cut(s) 892, 1353, 1370, 1375, 1418
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 6 cut(s) 115, 472, 650, 916, 1277, 1411
TaqI TCGA 7 cut(s) 206, 277, 318, 331, 375, 771, 1156
TaqII GACCGA 1 cut(s) 1412
TatI WGTACW 5 cut(s) 304, 424, 598, 806, 1322
Tru1I TTAA 6 cut(s) 486, 611, 1203, 1302, 1337, 1434
Tru9I TTAA 6 cut(s) 486, 611, 1203, 1302, 1337, 1434
TscAI CASTG 8 cut(s) 49, 118, 319, 462, 667, 1052, 1282, 1325
TseFI GTSAC 1 cut(s) 1034
Tsp45I GTSAC 1 cut(s) 1034
TspDTI ATGAA 5 cut(s) 395, 425, 433, 626, 694
TspGWI ACGGA 1 cut(s) 1430
TspRI CASTG 8 cut(s) 49, 118, 319, 462, 667, 1052, 1282, 1325
Van91I CCANNNNNTGG 1 cut(s) 161
Vha464I CTTAAG 1 cut(s) 1202
VpaK11BI GGWCC 1 cut(s) 108
VspI ATTAAT 1 cut(s) 1302
XapI RAATTY 4 cut(s) 849, 930, 1346, 1436
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XhoI CTCGAG 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 2 cut(s) 123, 818
ZrmI AGTACT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.