Belongs to the peptidase A1 family
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0404551 |
| rosa_roxburghii | Rroxscaffold_3G00255500 |
| rosa_rugosa | Rorug05G0202500 |
| rosa_samantha | Rh2DG252600 Rh2DG252800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 161 |
| AccII | CGCG | 1 cut(s) | 902 |
| AciI | CCGC | 2 cut(s) | 262, 504 |
| AclWI | GGATC | 7 cut(s) | 202, 330, 410, 423, 471, 884, 1071 |
| AcsI | RAATTY | 4 cut(s) | 849, 930, 1346, 1436 |
| AcuI | CTGAAG | 3 cut(s) | 295, 420, 1301 |
| AfaI | GTAC | 6 cut(s) | 306, 426, 600, 728, 808, 1324 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 161, 457, 510, 1360 |
| AflII | CTTAAG | 1 cut(s) | 1202 |
| AjnI | CCWGG | 2 cut(s) | 892, 1353 |
| AleI | CACNNNNGTG | 2 cut(s) | 312, 1121 |
| AluBI | AGCT | 2 cut(s) | 620, 1024 |
| AluI | AGCT | 2 cut(s) | 620, 1024 |
| Alw21I | GWGCWC | 1 cut(s) | 499 |
| Alw26I | GTCTC | 3 cut(s) | 521, 530, 957 |
| AlwI | GGATC | 7 cut(s) | 202, 330, 410, 423, 471, 884, 1071 |
| Ama87I | CYCGRG | 2 cut(s) | 770, 1360 |
| AoxI | GGCC | 4 cut(s) | 1351, 1368, 1373, 1378 |
| ApaI | GGGCCC | 1 cut(s) | 1382 |
| ApoI | RAATTY | 4 cut(s) | 849, 930, 1346, 1436 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 816, 848 |
| AseI | ATTAAT | 1 cut(s) | 1302 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 283 |
| AspLEI | GCGC | 1 cut(s) | 699 |
| AspS9I | GGNCC | 5 cut(s) | 108, 1368, 1373, 1378, 1379 |
| AsuC2I | CCSGG | 3 cut(s) | 1372, 1377, 1420 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 1322 |
| AsuII | TTCGAA | 1 cut(s) | 277 |
| AvaI | CYCGRG | 2 cut(s) | 770, 1360 |
| AvaII | GGWCC | 1 cut(s) | 108 |
| BaeGI | GKGCMC | 2 cut(s) | 452, 1382 |
| BamHI | GGATCC | 1 cut(s) | 415 |
| BanII | GRGCYC | 3 cut(s) | 1361, 1382, 1404 |
| BbsI | GAAGAC | 1 cut(s) | 195 |
| Bbv12I | GWGCWC | 1 cut(s) | 499 |
| BccI | CCATC | 5 cut(s) | 123, 862, 1152, 1240, 1288 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 761, 795 |
| BciT130I | CCWGG | 2 cut(s) | 894, 1355 |
| BclI | TGATCA | 1 cut(s) | 1068 |
| BcnI | CCSGG | 3 cut(s) | 1372, 1377, 1420 |
| BcoDI | GTCTC | 3 cut(s) | 521, 530, 957 |
| BfaI | CTAG | 2 cut(s) | 123, 818 |
| BfmI | CTRYAG | 3 cut(s) | 300, 615, 1268 |
| BfrI | CTTAAG | 1 cut(s) | 1202 |
| BmcAI | AGTACT | 1 cut(s) | 808 |
| Bme1390I | CCNGG | 5 cut(s) | 894, 1355, 1372, 1377, 1420 |
| Bme18I | GGWCC | 1 cut(s) | 108 |
| BmeT110I | CYCGRG | 2 cut(s) | 770, 1360 |
| BmgT120I | GGNCC | 5 cut(s) | 108, 1368, 1373, 1378, 1379 |
| BmiI | GGNNCC | 2 cut(s) | 417, 1380 |
| BmrFI | CCNGG | 5 cut(s) | 894, 1355, 1372, 1377, 1420 |
| BmrI | ACTGGG | 1 cut(s) | 1057 |
| BmsI | GCATC | 3 cut(s) | 46, 235, 769 |
| BmuI | ACTGGG | 1 cut(s) | 1057 |
| BpiI | GAAGAC | 1 cut(s) | 195 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 311, 343 |
| BpmI | CTGGAG | 1 cut(s) | 479 |
| Bpu14I | TTCGAA | 1 cut(s) | 277 |
| BpuEI | CTTGAG | 1 cut(s) | 512 |
| BpuMI | CCSGG | 3 cut(s) | 1372, 1377, 1420 |
| BsaBI | GATNNNNATC | 1 cut(s) | 888 |
| BsaJI | CCNNGG | 4 cut(s) | 160, 1354, 1418, 1441 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 481, 511 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 161, 457, 510, 1360 |
| Bse1I | ACTGG | 3 cut(s) | 211, 462, 1052 |
| Bse8I | GATNNNNATC | 1 cut(s) | 888 |
| BseBI | CCWGG | 2 cut(s) | 894, 1355 |
| BseDI | CCNNGG | 4 cut(s) | 160, 1354, 1418, 1441 |
| BseGI | GGATG | 2 cut(s) | 61, 784 |
| BseJI | GATNNNNATC | 1 cut(s) | 888 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 161, 457, 510, 1360 |
| BseNI | ACTGG | 3 cut(s) | 211, 462, 1052 |
| BseRI | GAGGAG | 2 cut(s) | 788, 1346 |
| BseSI | GKGCMC | 2 cut(s) | 452, 1382 |
| BsgI | GTGCAG | 1 cut(s) | 648 |
| Bsh1236I | CGCG | 1 cut(s) | 902 |
| BshFI | GGCC | 4 cut(s) | 1353, 1370, 1375, 1380 |
| BsiHKAI | GWGCWC | 1 cut(s) | 499 |
| BsiHKCI | CYCGRG | 2 cut(s) | 770, 1360 |
| BsiSI | CCGG | 4 cut(s) | 53, 1371, 1376, 1420 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 161, 457, 510, 1360 |
| BsmAI | GTCTC | 3 cut(s) | 521, 530, 957 |
| BsmI | GAATGC | 1 cut(s) | 571 |
| BsnI | GGCC | 4 cut(s) | 1353, 1370, 1375, 1380 |
| BsoBI | CYCGRG | 2 cut(s) | 770, 1360 |
| Bsp119I | TTCGAA | 1 cut(s) | 277 |
| Bsp120I | GGGCCC | 1 cut(s) | 1378 |
| Bsp1286I | GDGCHC | 5 cut(s) | 452, 499, 1361, 1382, 1404 |
| Bsp1407I | TGTACA | 1 cut(s) | 1322 |
| Bsp143I | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| Bsp68I | TCGCGA | 1 cut(s) | 902 |
| BspACI | CCGC | 2 cut(s) | 262, 504 |
| BspANI | GGCC | 4 cut(s) | 1353, 1370, 1375, 1380 |
| BspFNI | CGCG | 1 cut(s) | 902 |
| BspHI | TCATGA | 1 cut(s) | 637 |
| BspLI | GGNNCC | 2 cut(s) | 417, 1380 |
| BspPI | GGATC | 7 cut(s) | 202, 330, 410, 423, 471, 884, 1071 |
| BspT104I | TTCGAA | 1 cut(s) | 277 |
| BspTI | CTTAAG | 1 cut(s) | 1202 |
| BsrGI | TGTACA | 1 cut(s) | 1322 |
| BsrI | ACTGG | 3 cut(s) | 211, 462, 1052 |
| BssECI | CCNNGG | 4 cut(s) | 160, 1354, 1418, 1441 |
| BssMI | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| BssT1I | CCWWGG | 1 cut(s) | 160 |
| Bst2UI | CCWGG | 2 cut(s) | 894, 1355 |
| Bst4CI | ACNGT | 6 cut(s) | 115, 472, 650, 916, 1277, 1411 |
| Bst6I | CTCTTC | 2 cut(s) | 156, 671 |
| BstAFI | CTTAAG | 1 cut(s) | 1202 |
| BstAUI | TGTACA | 1 cut(s) | 1322 |
| BstBI | TTCGAA | 1 cut(s) | 277 |
| BstC8I | GCNNGC | 3 cut(s) | 924, 985, 996 |
| BstDEI | CTNAG | 1 cut(s) | 1102 |
| BstDSI | CCRYGG | 1 cut(s) | 1441 |
| BstF5I | GGATG | 2 cut(s) | 61, 784 |
| BstFNI | CGCG | 1 cut(s) | 902 |
| BstHHI | GCGC | 1 cut(s) | 699 |
| BstKTI | GATC | 8 cut(s) | 210, 325, 418, 466, 892, 1071, 1079, 1315 |
| BstMAI | GTCTC | 3 cut(s) | 521, 530, 957 |
| BstMBI | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 503, 908 |
| BstNI | CCWGG | 2 cut(s) | 894, 1355 |
| BstSCI | CCNGG | 5 cut(s) | 892, 1353, 1370, 1375, 1418 |
| BstSFI | CTRYAG | 3 cut(s) | 300, 615, 1268 |
| BstSLI | GKGCMC | 2 cut(s) | 452, 1382 |
| BstUI | CGCG | 1 cut(s) | 902 |
| BstV2I | GAAGAC | 1 cut(s) | 195 |
| BstX2I | RGATCY | 5 cut(s) | 322, 415, 463, 889, 1076 |
| BstYI | RGATCY | 5 cut(s) | 322, 415, 463, 889, 1076 |
| BsuRI | GGCC | 4 cut(s) | 1353, 1370, 1375, 1380 |
| BtgI | CCRYGG | 1 cut(s) | 1441 |
| BtsCI | GGATG | 2 cut(s) | 61, 784 |
| BtsI | GCAGTG | 1 cut(s) | 660 |
| BtsIMutI | CAGTG | 8 cut(s) | 49, 111, 319, 455, 660, 1045, 1282, 1325 |
| BtuMI | TCGCGA | 1 cut(s) | 902 |
| Cac8I | GCNNGC | 3 cut(s) | 924, 985, 996 |
| CciI | TCATGA | 1 cut(s) | 637 |
| CfoI | GCGC | 1 cut(s) | 699 |
| Cfr13I | GGNCC | 5 cut(s) | 108, 1368, 1373, 1378, 1379 |
| CseI | GACGC | 1 cut(s) | 8 |
| Csp6I | GTAC | 6 cut(s) | 305, 425, 599, 727, 807, 1323 |
| CviAII | CATG | 4 cut(s) | 445, 539, 638, 754 |
| CviQI | GTAC | 6 cut(s) | 305, 425, 599, 727, 807, 1323 |
| DdeI | CTNAG | 1 cut(s) | 1102 |
| DpnI | GATC | 8 cut(s) | 209, 324, 417, 465, 891, 1070, 1078, 1314 |
| DpnII | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| Eam1104I | CTCTTC | 2 cut(s) | 156, 671 |
| EarI | CTCTTC | 2 cut(s) | 156, 671 |
| Eco130I | CCWWGG | 1 cut(s) | 160 |
| Eco24I | GRGCYC | 3 cut(s) | 1361, 1382, 1404 |
| Eco47I | GGWCC | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 3 cut(s) | 295, 420, 1301 |
| Eco88I | CYCGRG | 2 cut(s) | 770, 1360 |
| EcoRII | CCWGG | 2 cut(s) | 892, 1353 |
| EcoT14I | CCWWGG | 1 cut(s) | 160 |
| EcoT38I | GRGCYC | 3 cut(s) | 1361, 1382, 1404 |
| ErhI | CCWWGG | 1 cut(s) | 160 |
| FaeI | CATG | 4 cut(s) | 448, 542, 641, 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 234, 266 |
| FatI | CATG | 4 cut(s) | 444, 538, 637, 753 |
| FbaI | TGATCA | 1 cut(s) | 1068 |
| FokI | GGATG | 2 cut(s) | 68, 791 |
| FriOI | GRGCYC | 3 cut(s) | 1361, 1382, 1404 |
| FspBI | CTAG | 2 cut(s) | 123, 818 |
| GlaI | GCGC | 1 cut(s) | 698 |
| GsuI | CTGGAG | 1 cut(s) | 479 |
| HaeIII | GGCC | 4 cut(s) | 1353, 1370, 1375, 1380 |
| HapII | CCGG | 4 cut(s) | 53, 1371, 1376, 1420 |
| HgaI | GACGC | 1 cut(s) | 8 |
| HhaI | GCGC | 1 cut(s) | 699 |
| Hin1II | CATG | 4 cut(s) | 448, 542, 641, 757 |
| Hin6I | GCGC | 1 cut(s) | 697 |
| HinP1I | GCGC | 1 cut(s) | 697 |
| HpaII | CCGG | 4 cut(s) | 53, 1371, 1376, 1420 |
| HphI | GGTGA | 2 cut(s) | 251, 1322 |
| Hpy166II | GTNNAC | 4 cut(s) | 108, 307, 729, 1323 |
| Hpy188I | TCNGA | 8 cut(s) | 271, 468, 481, 559, 588, 1011, 1076, 1150 |
| Hpy188III | TCNNGA | 8 cut(s) | 330, 638, 802, 842, 901, 956, 1034, 1464 |
| Hpy8I | GTNNAC | 4 cut(s) | 108, 307, 729, 1323 |
| HpyAV | CCTTC | 3 cut(s) | 226, 266, 406 |
| HpyCH4III | ACNGT | 6 cut(s) | 115, 472, 650, 916, 1277, 1411 |
| HpyCH4V | TGCA | 6 cut(s) | 59, 248, 569, 665, 671, 911 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 503, 908 |
| HpyF3I | CTNAG | 1 cut(s) | 1102 |
| Hsp92II | CATG | 4 cut(s) | 448, 542, 641, 757 |
| HspAI | GCGC | 1 cut(s) | 697 |
| Ksp22I | TGATCA | 1 cut(s) | 1068 |
| Kzo9I | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| LmnI | GCTCC | 2 cut(s) | 502, 751 |
| LweI | GCATC | 3 cut(s) | 46, 235, 769 |
| MaeI | CTAG | 2 cut(s) | 123, 818 |
| MaeIII | GTNAC | 1 cut(s) | 1034 |
| MalI | GATC | 8 cut(s) | 209, 324, 417, 465, 891, 1070, 1078, 1314 |
| MboI | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| MflI | RGATCY | 5 cut(s) | 322, 415, 463, 889, 1076 |
| MhlI | GDGCHC | 5 cut(s) | 452, 499, 1361, 1382, 1404 |
| MlyI | GAGTC | 3 cut(s) | 20, 523, 882 |
| MmeI | TCCRAC | 1 cut(s) | 524 |
| MroXI | GAANNNNTTC | 1 cut(s) | 283 |
| MseI | TTAA | 6 cut(s) | 486, 611, 1203, 1302, 1337, 1434 |
| MslI | CAYNNNNRTG | 3 cut(s) | 312, 1119, 1121 |
| MspCI | CTTAAG | 1 cut(s) | 1202 |
| MspI | CCGG | 4 cut(s) | 53, 1371, 1376, 1420 |
| MspR9I | CCNGG | 5 cut(s) | 894, 1355, 1372, 1377, 1420 |
| Mva1269I | GAATGC | 1 cut(s) | 571 |
| MvaI | CCWGG | 2 cut(s) | 894, 1355 |
| MvnI | CGCG | 1 cut(s) | 902 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 503, 908 |
| NciI | CCSGG | 3 cut(s) | 1372, 1377, 1420 |
| NdeII | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| NlaIII | CATG | 4 cut(s) | 448, 542, 641, 757 |
| NlaIV | GGNNCC | 2 cut(s) | 417, 1380 |
| NmuCI | GTSAC | 1 cut(s) | 1034 |
| NruI | TCGCGA | 1 cut(s) | 902 |
| NspV | TTCGAA | 1 cut(s) | 277 |
| OliI | CACNNNNGTG | 2 cut(s) | 312, 1121 |
| PaeR7I | CTCGAG | 1 cut(s) | 770 |
| PagI | TCATGA | 1 cut(s) | 637 |
| PctI | GAATGC | 1 cut(s) | 571 |
| PdmI | GAANNNNTTC | 1 cut(s) | 283 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 161 |
| PfoI | TCCNGGA | 1 cut(s) | 892 |
| PleI | GAGTC | 3 cut(s) | 19, 522, 881 |
| PpsI | GAGTC | 3 cut(s) | 19, 522, 881 |
| PshBI | ATTAAT | 1 cut(s) | 1302 |
| Psp6I | CCWGG | 2 cut(s) | 892, 1353 |
| PspGI | CCWGG | 2 cut(s) | 892, 1353 |
| PspN4I | GGNNCC | 2 cut(s) | 417, 1380 |
| PspOMI | GGGCCC | 1 cut(s) | 1378 |
| PspPI | GGNCC | 5 cut(s) | 108, 1368, 1373, 1378, 1379 |
| PspXI | VCTCGAGB | 1 cut(s) | 770 |
| PsuI | RGATCY | 5 cut(s) | 322, 415, 463, 889, 1076 |
| RruI | TCGCGA | 1 cut(s) | 902 |
| RsaI | GTAC | 6 cut(s) | 306, 426, 600, 728, 808, 1324 |
| RsaNI | GTAC | 6 cut(s) | 305, 425, 599, 727, 807, 1323 |
| RseI | CAYNNNNRTG | 3 cut(s) | 312, 1119, 1121 |
| SaqAI | TTAA | 6 cut(s) | 486, 611, 1203, 1302, 1337, 1434 |
| Sau3AI | GATC | 8 cut(s) | 207, 322, 415, 463, 889, 1068, 1076, 1312 |
| Sau96I | GGNCC | 5 cut(s) | 108, 1368, 1373, 1378, 1379 |
| ScaI | AGTACT | 1 cut(s) | 808 |
| SchI | GAGTC | 3 cut(s) | 20, 523, 882 |
| ScrFI | CCNGG | 5 cut(s) | 894, 1355, 1372, 1377, 1420 |
| SduI | GDGCHC | 5 cut(s) | 452, 499, 1361, 1382, 1404 |
| SetI | ASST | 5 cut(s) | 162, 534, 622, 1026, 1312 |
| SfaNI | GCATC | 3 cut(s) | 46, 235, 769 |
| SfcI | CTRYAG | 3 cut(s) | 300, 615, 1268 |
| Sfr274I | CTCGAG | 1 cut(s) | 770 |
| SfuI | TTCGAA | 1 cut(s) | 277 |
| SinI | GGWCC | 1 cut(s) | 108 |
| SlaI | CTCGAG | 1 cut(s) | 770 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 312, 1119, 1121 |
| SmlI | CTYRAG | 3 cut(s) | 527, 770, 1202 |
| SmoI | CTYRAG | 3 cut(s) | 527, 770, 1202 |
| SsiI | CCGC | 2 cut(s) | 262, 504 |
| SspI | AATATT | 1 cut(s) | 1262 |
| SspMI | CTAG | 2 cut(s) | 123, 818 |
| StyD4I | CCNGG | 5 cut(s) | 892, 1353, 1370, 1375, 1418 |
| StyI | CCWWGG | 1 cut(s) | 160 |
| TaaI | ACNGT | 6 cut(s) | 115, 472, 650, 916, 1277, 1411 |
| TaqI | TCGA | 7 cut(s) | 206, 277, 318, 331, 375, 771, 1156 |
| TaqII | GACCGA | 1 cut(s) | 1412 |
| TatI | WGTACW | 5 cut(s) | 304, 424, 598, 806, 1322 |
| Tru1I | TTAA | 6 cut(s) | 486, 611, 1203, 1302, 1337, 1434 |
| Tru9I | TTAA | 6 cut(s) | 486, 611, 1203, 1302, 1337, 1434 |
| TscAI | CASTG | 8 cut(s) | 49, 118, 319, 462, 667, 1052, 1282, 1325 |
| TseFI | GTSAC | 1 cut(s) | 1034 |
| Tsp45I | GTSAC | 1 cut(s) | 1034 |
| TspDTI | ATGAA | 5 cut(s) | 395, 425, 433, 626, 694 |
| TspGWI | ACGGA | 1 cut(s) | 1430 |
| TspRI | CASTG | 8 cut(s) | 49, 118, 319, 462, 667, 1052, 1282, 1325 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 161 |
| Vha464I | CTTAAG | 1 cut(s) | 1202 |
| VpaK11BI | GGWCC | 1 cut(s) | 108 |
| VspI | ATTAAT | 1 cut(s) | 1302 |
| XapI | RAATTY | 4 cut(s) | 849, 930, 1346, 1436 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1021 |
| XhoI | CTCGAG | 1 cut(s) | 770 |
| XmnI | GAANNNNTTC | 1 cut(s) | 283 |
| XspI | CTAG | 2 cut(s) | 123, 818 |
| ZrmI | AGTACT | 1 cut(s) | 808 |