Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0021399

Physical Location & Seq

Genomic Coordinates Forward (+)

26247058 .. 26273146

Gene Structure 26089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG252800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGAACCCGACAAGTCCCCTGCTCGAACCCTCTAGGCCTCTACCCATCTCTACGCCGCCGGCCGCCGCTGCCAAAGAGTTCGCCGACGGAACCCTCTACAGTCTACCCATTTCTCTTCTTTCACTTCTCGCAACTCTTCATTTTCAGCTTGTTCTGTTCTCGCCGACGGGCTCCATGGTGCAAAGTGGTTCATTCCTGGATATTGCTGCTTCTAATGGTTTGTTTGGTCTTGGTATGGAGAAGATGTCTATTCCTAGCATTTTATCCCGGGAAGGCTTTACTCTCTTCCATCCATCAAGTTCGTTCAGTAAAGTACATTACGACCATACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

112

Amino Acids

11.96

Weight (kDa)

6.38

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021399)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404551
rosa_roxburghii	Rroxscaffold_3G00255500
rosa_rugosa	Rorug05G0202500
rosa_samantha	Rh2DG252600 Rh2DG252800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AciI	CCGC	3 cut(s)	59, 66, 69
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	1 cut(s)	318
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	2 cut(s)	38, 63
ApeKI	GCWGC	2 cut(s)	71, 209
AsuC2I	CCSGG	2 cut(s)	271, 272
AvaI	CYCGRG	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	58, 196
BccI	CCATC	3 cut(s)	56, 300, 304
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	2 cut(s)	271, 272
BfaI	CTAG	2 cut(s)	36, 258
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	5 cut(s)	59, 66, 69, 72, 210
BlsI	GCNGC	5 cut(s)	60, 67, 70, 73, 211
Bme1390I	CCNGG	3 cut(s)	200, 271, 272
BmeT110I	CYCGRG	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	94, 175
BmrFI	CCNGG	3 cut(s)	200, 271, 272
BpuMI	CCSGG	2 cut(s)	271, 272
BsaJI	CCNNGG	2 cut(s)	177, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse118I	RCCGGY	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	177, 270
BseGI	GGATG	1 cut(s)	292
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	58, 196
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	40, 65
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	62, 271
BslFI	GGGAC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	3
BsnI	GGCC	2 cut(s)	40, 65
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	3 cut(s)	59, 66, 69
BspANI	GGCC	2 cut(s)	40, 65
BspLI	GGNNCC	2 cut(s)	94, 175
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	177, 270
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	3 cut(s)	123, 144, 293
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	292
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	198, 269, 270
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	58, 196
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	40, 65
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	61
Cfr9I	CCCGGG	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	5 cut(s)	40, 65, 151, 174, 279
CviKI_1	RGCY	5 cut(s)	40, 65, 151, 174, 279
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	3 cut(s)	123, 144, 293
EarI	CTCTTC	3 cut(s)	123, 144, 293
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	181
FaiI	YATR	3 cut(s)	179, 239, 330
FaqI	GGGAC	1 cut(s)	3
FatI	CATG	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	59, 66, 69, 72, 210
FokI	GGATG	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	5 cut(s)	59, 66, 69, 72, 210
FspBI	CTAG	2 cut(s)	36, 258
GluI	GCNGC	5 cut(s)	59, 66, 69, 72, 210
HaeIII	GGCC	2 cut(s)	40, 65
HapII	CCGG	2 cut(s)	62, 271
Hin1II	CATG	1 cut(s)	181
HpaII	CCGG	2 cut(s)	62, 271
Hpy166II	GTNNAC	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	2 cut(s)	92, 172
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	5 cut(s)	35, 75, 185, 212, 284
Lsp1109I	GCAGC	2 cut(s)	58, 196
MaeI	CTAG	2 cut(s)	36, 258
MboII	GAAGA	5 cut(s)	16, 110, 131, 256, 280
MhlI	GDGCHC	1 cut(s)	176
MnlI	CCTC	3 cut(s)	43, 51, 107
MroNI	GCCGGC	1 cut(s)	61
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	62, 271
MspR9I	CCNGG	3 cut(s)	200, 271, 272
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	71
NaeI	GCCGGC	1 cut(s)	63
NciI	CCSGG	2 cut(s)	271, 272
NcoI	CCATGG	1 cut(s)	177
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	94, 175
PceI	AGGCCT	1 cut(s)	40
PdiI	GCCGGC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	60, 67, 70, 73, 211
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	94, 175
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SatI	GCNGC	5 cut(s)	59, 66, 69, 72, 210
ScrFI	CCNGG	3 cut(s)	200, 271, 272
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	2 cut(s)	153, 337
SfcI	CTRYAG	1 cut(s)	100
SmaI	CCCGGG	1 cut(s)	272
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	3 cut(s)	59, 66, 69
SspMI	CTAG	2 cut(s)	36, 258
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	3 cut(s)	198, 269, 270
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	27
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	3 cut(s)	61, 68, 71
TseI	GCWGC	2 cut(s)	71, 209
TspDTI	ATGAA	3 cut(s)	17, 131, 183
TspGWI	ACGGA	1 cut(s)	105
TspMI	CCCGGG	1 cut(s)	270
XmaI	CCCGGG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	106
XspI	CTAG	2 cut(s)	36, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.