Rh2DG252600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0021399
Physical Location & Seq
Forward (+)
26204188 .. 26220509
16322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG252600.1

Sequence Viewer

Length: 357 bp
ATGGCAACTCCACTTTTCAGATCACCTCTTTGGGATAGTACTTCGCATTATACGACGGTGCAATTGGGGACGCCGGGAATAAAGTTTATGATGGCGCTTGATACTGGGAGTGACCTGTTTTGGGTGTCTTGTGAAGGAACAGCTTATGCTCCTGTGCAAAGTGGTTCATTCCTGGATATTGCTGCTTCTAATGGTTTGTTTGGTCTTGGTATGGAGAAGATGTCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACTCTCTTCCATCCATCAAGTTCGTTCGATGCAAACATTCAAGTTGAGTTATTAAGTAGTTATTTTGTTTTGACGCAAAATAGTTGTGCAAGAGAAATTTGA

Protein Analysis

118

Amino Acids

12.83

Weight (kDa)

4.63

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 17 - 46 1.7e-07 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021399)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0404551
rosa_roxburghii Rroxscaffold_3G00255500
rosa_rugosa Rorug05G0202500
rosa_samantha Rh2DG252600 Rh2DG252800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 351
AspLEI GCGC 1 cut(s) 97
AsuC2I CCSGG 3 cut(s) 75, 244, 245
AsuHPI GGTGA 1 cut(s) 15
AvaI CYCGRG 1 cut(s) 243
BbvI GCAGC 1 cut(s) 169
BccI CCATC 3 cut(s) 85, 273, 277
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 3 cut(s) 75, 244, 245
BfaI CTAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 4 cut(s) 75, 173, 244, 245
BmeT110I CYCGRG 1 cut(s) 243
BmrFI CCNGG 4 cut(s) 75, 173, 244, 245
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 114
BpuMI CCSGG 3 cut(s) 75, 244, 245
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 74, 244
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 71
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 4 cut(s) 73, 171, 242, 243
BstV1I GCAGC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 265
CfoI GCGC 1 cut(s) 97
Cfr9I CCCGGG 1 cut(s) 243
CseI GACGC 2 cut(s) 79, 337
Csp6I GTAC 1 cut(s) 39
CviJI RGCY 2 cut(s) 143, 252
CviKI_1 RGCY 2 cut(s) 143, 252
CviQI GTAC 1 cut(s) 39
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 171
FaiI YATR 4 cut(s) 51, 89, 147, 212
FaqI GGGAC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 98
HapII CCGG 2 cut(s) 74, 244
HgaI GACGC 2 cut(s) 79, 337
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HpaII CCGG 2 cut(s) 74, 244
HphI GGTGA 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 128, 242
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 61, 157, 287, 344
Hsp92I GRCGYC 1 cut(s) 71
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 7 cut(s) 87, 90, 128, 158, 165, 185, 257
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 2 cut(s) 229, 253
MfeI CAATTG 1 cut(s) 62
MluCI AATT 2 cut(s) 62, 351
MnlI CCTC 1 cut(s) 36
MseI TTAA 1 cut(s) 308
MspI CCGG 2 cut(s) 74, 244
MspR9I CCNGG 4 cut(s) 75, 173, 244, 245
MunI CAATTG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 173
NciI CCSGG 3 cut(s) 75, 244, 245
NdeII GATC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 20
ScaI AGTACT 1 cut(s) 40
ScrFI CCNGG 4 cut(s) 75, 173, 244, 245
SetI ASST 3 cut(s) 28, 117, 145
SfaNI GCATC 1 cut(s) 274
SmaI CCCGGG 1 cut(s) 245
Sse9I AATT 2 cut(s) 62, 351
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 4 cut(s) 73, 171, 242, 243
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 282
TasI AATT 2 cut(s) 62, 351
TatI WGTACW 1 cut(s) 38
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 156
TspMI CCCGGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 351
XmaI CCCGGG 1 cut(s) 243
XspI CTAG 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.