Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017551

Physical Location & Seq

Genomic Coordinates Forward (+)

59585211 .. 59587302

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGAGGATGATACATAGCGGAGTACATGGGGCGAAGAAGCTTCTGAACCGCTCCGCCGACTCACGCGCCGTCATCAATTCGACGACGCCGCAGCTGAAGAAGCTACCATTTACCTCCTCCAACGGCGGCCCAGCAGCCACAGAAAGAGAACATCAAACACTCCACCATGTTCTTAAATCCTGCAAACTCACTTTGGATTCCGCAACTGCAATTCAAACCCACGCTAGAATCATTACACGTGGATATGGCACATACCCTTCTCTCCTTGCTTCCCTTCTAGCTGTTTATAAGCGCTGTGGTTGTGTCACTCTTGCTACTCAACTTGTTGATCACATTTTCAATTGTGCTAATGGTATTAATTTTTTGAATCTCGTTATCGAAAGCCTAATGAGGAATGGGGAATGTGACATTGCCAAGAGGGTGTTCCGAAAAGTCCGTAGCCCGGATTTAGTAACTTGGAACACTGTCATTGGAGGTTGTGTTCGAAATGAGCGTTTTCAGGAGGCATTGGGATTGTTCCGGAAGCTGTTGTGCTCGGATTTGGAACCGGATGGGTTCACGTTTTCGTCTGTTATCACTGCGTGTGCGCGGCTTGGAGCGCTGCATAATGCGCAGAGGGTGCATTGTTTGATGATGAAGAAGAGAATTGAGCTGAATTTTATTCTGCGTGCAGCTCTTATAGACATGTACTCAAAGTGTGGTAGAGTGCAGACTGCTAGAGAGATTTTTGGTACTGTCCAGCATAATGATGTCTCGGTTTGGAATGTGATGATTAATGGATTGGCAATTCACGGGCTTGCTTTGGATGCAATCGAGATATTCTCAGAGATGGAGATGGATAATGTGTTACCTGATTCAATAACTTTTAAGCACTTGAAGGATAACCAAGAAACCTATGTGATATCGATTAATGTTCTTCGATTCCTATACCTTGTCATACCCCATCAGAGTAATGCTGAGAACGAGCCTTCAGGGTCCAGATTTAAACCTTGGGTAGCTGCTAGCAAACCGACTAGAGGTGAACTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 RNase_T

Protein Analysis

344

Amino Acids

38.32

Weight (kDa)

9.26

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	149 - 198	1.1e-12	PPR repeat family
PPR	PF01535	152 - 179	2.3e-06	PPR repeat
PPR_2	PF13041	251 - 291	6e-08	PPR repeat family
PPR	PF01535	254 - 282	4.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50990
fragaria_vesca	FvH4_5g09670
rosa_chinensis	RchiOBHm_Chr7g0188581
rosa_laevigata	RLG00000004682
rosa_roxburghii	Rroxscaffold_3G00266240
rosa_rugosa	Rorug06G0491400 Rorug06G0491500
rosa_samantha	Rh7AG096200 Rh7BG098100 Rh7CG099100 Rh7DG098200
rosa_wichuraiana	Rw7G008320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
Acc16I	TGCGCA	1 cut(s)	615
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	2 cut(s)	69, 592
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	7 cut(s)	21, 52, 57, 92, 129, 204, 592
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	2 cut(s)	119, 957
AcvI	CACGTG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	27, 692, 736
AfeI	AGCGCT	2 cut(s)	296, 603
AfiI	CCNNNNNNNGG	2 cut(s)	445, 1019
AflIII	ACRYGT	2 cut(s)	239, 687
AgsI	TTSAA	5 cut(s)	218, 343, 370, 861, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	8 cut(s)	43, 97, 106, 284, 529, 655, 677, 1001
AluI	AGCT	8 cut(s)	43, 97, 106, 284, 529, 655, 677, 1001
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	1 cut(s)	760
Aor13HI	TCCGGA	1 cut(s)	522
Aor51HI	AGCGCT	2 cut(s)	296, 603
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	5 cut(s)	94, 137, 604, 674, 1001
ApoI	RAATTY	1 cut(s)	658
AseI	ATTAAT	3 cut(s)	360, 777, 912
AspLEI	GCGC	5 cut(s)	71, 297, 592, 604, 616
AspS9I	GGNCC	2 cut(s)	131, 978
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	1034
AsuII	TTCGAA	1 cut(s)	487
AsuNHI	GCTAGC	1 cut(s)	1004
AvaII	GGWCC	1 cut(s)	978
BbrPI	CACGTG	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	5 cut(s)	106, 149, 591, 686, 988
BccI	CCATC	4 cut(s)	548, 826, 832, 954
BceAI	ACGGC	2 cut(s)	56, 142
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	760
BfaI	CTAG	5 cut(s)	228, 281, 720, 1005, 1017
BfoI	RGCGCY	2 cut(s)	298, 605
BisI	GCNGC	8 cut(s)	92, 95, 130, 138, 593, 605, 675, 1002
BlsI	GCNGC	8 cut(s)	93, 96, 131, 139, 594, 606, 676, 1003
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	978
BmgT120I	GGNCC	2 cut(s)	131, 978
BmiI	GGNNCC	2 cut(s)	549, 979
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	799
BmtI	GCTAGC	1 cut(s)	1008
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
Bpu14I	TTCGAA	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	908
BsaAI	YACGTR	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	992
BsaWI	WCCGGW	2 cut(s)	522, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 1019
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	522
BseCI	ATCGAT	1 cut(s)	908
BseDI	CCNNGG	1 cut(s)	992
BseGI	GGATG	3 cut(s)	15, 559, 814
BseLI	CCNNNNNNNGG	2 cut(s)	445, 1019
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	840, 951
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	5 cut(s)	106, 149, 591, 686, 988
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	2 cut(s)	693, 731
Bsh1236I	CGCG	2 cut(s)	69, 592
BshFI	GGCC	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	908
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	3 cut(s)	446, 523, 551
BslI	CCNNNNNNNGG	2 cut(s)	445, 1019
BsmAI	GTCTC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp13I	TCCGGA	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	7 cut(s)	21, 52, 57, 92, 129, 204, 592
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	839, 952
BspDI	ATCGAT	1 cut(s)	908
BspEI	TCCGGA	1 cut(s)	522
BspFNI	CGCG	2 cut(s)	69, 592
BspLI	GGNNCC	2 cut(s)	549, 979
BspOI	GCTAGC	1 cut(s)	1008
BspT104I	TTCGAA	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	992
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	992
Bst4CI	ACNGT	2 cut(s)	469, 739
Bst6I	CTCTTC	1 cut(s)	638
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	487
BstC8I	GCNNGC	3 cut(s)	672, 801, 1006
BstDEI	CTNAG	2 cut(s)	826, 960
BstF5I	GGATG	3 cut(s)	15, 559, 814
BstFNI	CGCG	2 cut(s)	69, 592
BstH2I	RGCGCY	2 cut(s)	298, 605
BstHHI	GCGC	5 cut(s)	71, 297, 592, 604, 616
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	760
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 601, 613, 622, 809
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	444
BstUI	CGCG	2 cut(s)	69, 592
BstV1I	GCAGC	5 cut(s)	106, 149, 591, 686, 988
Bsu15I	ATCGAT	1 cut(s)	908
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	908
BtsCI	GGATG	3 cut(s)	15, 559, 814
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	465, 579
Cac8I	GCNNGC	3 cut(s)	672, 801, 1006
CfoI	GCGC	5 cut(s)	71, 297, 592, 604, 616
Cfr13I	GGNCC	2 cut(s)	131, 978
ClaI	ATCGAT	1 cut(s)	908
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	26, 691, 735
CviAII	CATG	3 cut(s)	29, 170, 688
CviQI	GTAC	3 cut(s)	26, 691, 735
DdeI	CTNAG	2 cut(s)	826, 960
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraI	TTTAAA	1 cut(s)	988
DraIII	CACNNNGTG	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	992
Eco32I	GATATC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	978
Eco47III	AGCGCT	2 cut(s)	296, 603
Eco57I	CTGAAG	2 cut(s)	119, 957
Eco72I	CACGTG	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	906
EcoT14I	CCWWGG	1 cut(s)	992
ErhI	CCWWGG	1 cut(s)	992
FaeI	CATG	3 cut(s)	32, 173, 691
FatI	CATG	3 cut(s)	28, 169, 687
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	8 cut(s)	92, 95, 130, 138, 593, 605, 675, 1002
FokI	GGATG	3 cut(s)	22, 566, 821
Fsp4HI	GCNGC	8 cut(s)	92, 95, 130, 138, 593, 605, 675, 1002
FspBI	CTAG	5 cut(s)	228, 281, 720, 1005, 1017
FspI	TGCGCA	1 cut(s)	615
GlaI	GCGC	5 cut(s)	70, 296, 591, 603, 615
GluI	GCNGC	8 cut(s)	92, 95, 130, 138, 593, 605, 675, 1002
GsaI	CCCAGC	1 cut(s)	137
HaeII	RGCGCY	2 cut(s)	298, 605
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	3 cut(s)	446, 523, 551
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	5 cut(s)	71, 297, 592, 604, 616
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	32, 173, 691
Hin6I	GCGC	5 cut(s)	69, 295, 590, 602, 614
HinP1I	GCGC	5 cut(s)	69, 295, 590, 602, 614
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	6 cut(s)	62, 200, 231, 370, 857, 924
HpaII	CCGG	3 cut(s)	446, 523, 551
HphI	GGTGA	1 cut(s)	1034
Hpy166II	GTNNAC	2 cut(s)	561, 1025
Hpy188I	TCNGA	5 cut(s)	48, 431, 541, 829, 951
Hpy188III	TCNNGA	4 cut(s)	503, 523, 817, 981
Hpy8I	GTNNAC	2 cut(s)	561, 1025
Hpy99I	CGWCG	2 cut(s)	88, 91
HpyAV	CCTTC	4 cut(s)	270, 287, 874, 981
HpyCH4III	ACNGT	2 cut(s)	469, 739
HpyCH4IV	ACGT	2 cut(s)	241, 563
HpyCH4V	TGCA	7 cut(s)	186, 212, 607, 625, 674, 712, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 601, 613, 622, 809
HpyF3I	CTNAG	2 cut(s)	826, 960
HpySE526I	ACGT	2 cut(s)	241, 563
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	32, 173, 691
HspAI	GCGC	5 cut(s)	69, 295, 590, 602, 614
Kpn2I	TCCGGA	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	59, 599
Lsp1109I	GCAGC	5 cut(s)	106, 149, 591, 686, 988
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	5 cut(s)	228, 281, 720, 1005, 1017
MaeII	ACGT	2 cut(s)	241, 563
MaeIII	GTNAC	4 cut(s)	307, 407, 454, 849
MalI	GATC	1 cut(s)	333
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	331
MboII	GAAGA	5 cut(s)	49, 112, 652, 655, 911
MfeI	CAATTG	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	7 cut(s)	79, 213, 343, 361, 648, 658, 789
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	127, 130, 387, 414, 470, 499, 612, 1013
MroI	TCCGGA	1 cut(s)	522
MseI	TTAA	6 cut(s)	177, 360, 777, 870, 912, 987
MslI	CAYNNNNRTG	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	3 cut(s)	446, 523, 551
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	343
MvnI	CGCG	2 cut(s)	69, 592
MwoI	GCNNNNNNNGC	5 cut(s)	103, 601, 613, 622, 809
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	1 cut(s)	331
NheI	GCTAGC	1 cut(s)	1004
NlaIII	CATG	3 cut(s)	32, 173, 691
NlaIV	GGNNCC	2 cut(s)	549, 979
NmuCI	GTSAC	2 cut(s)	307, 407
NsbI	TGCGCA	1 cut(s)	615
NspI	RCATGY	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	487
PciI	ACATGT	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PfeI	GAWTC	5 cut(s)	200, 231, 370, 857, 924
PkrI	GCNGC	8 cut(s)	93, 96, 131, 139, 594, 606, 676, 1003
PleI	GAGTC	1 cut(s)	56
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	56
Ppu21I	YACGTR	1 cut(s)	242
PscI	ACATGT	1 cut(s)	687
PshBI	ATTAAT	3 cut(s)	360, 777, 912
PsiI	TTATAA	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	549, 979
PspPI	GGNCC	2 cut(s)	131, 978
PvuII	CAGCTG	1 cut(s)	97
RsaI	GTAC	3 cut(s)	27, 692, 736
RsaNI	GTAC	3 cut(s)	26, 691, 735
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	6 cut(s)	177, 360, 777, 870, 912, 987
SatI	GCNGC	8 cut(s)	92, 95, 130, 138, 593, 605, 675, 1002
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	131, 978
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	1 cut(s)	799
SfuI	TTCGAA	1 cut(s)	487
SinI	GGWCC	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	750
Sse9I	AATT	7 cut(s)	79, 213, 343, 361, 648, 658, 789
SsiI	CCGC	7 cut(s)	21, 52, 57, 92, 129, 204, 592
SspMI	CTAG	5 cut(s)	228, 281, 720, 1005, 1017
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	992
TaaI	ACNGT	2 cut(s)	469, 739
TaiI	ACGT	2 cut(s)	244, 566
TaqI	TCGA	6 cut(s)	83, 381, 487, 816, 908, 922
TasI	AATT	7 cut(s)	79, 213, 343, 361, 648, 658, 789
TatI	WGTACW	2 cut(s)	25, 690
TauI	GCSGC	3 cut(s)	94, 132, 595
TfiI	GAWTC	5 cut(s)	200, 231, 370, 857, 924
Tru1I	TTAA	6 cut(s)	177, 360, 777, 870, 912, 987
Tru9I	TTAA	6 cut(s)	177, 360, 777, 870, 912, 987
TscAI	CASTG	2 cut(s)	472, 586
TseFI	GTSAC	2 cut(s)	307, 407
TseI	GCWGC	5 cut(s)	94, 137, 604, 674, 1001
Tsp45I	GTSAC	2 cut(s)	307, 407
TspDTI	ATGAA	1 cut(s)	653
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	472, 586
VpaK11BI	GGWCC	1 cut(s)	978
VspI	ATTAAT	3 cut(s)	360, 777, 912
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	1 cut(s)	691
XspI	CTAG	5 cut(s)	228, 281, 720, 1005, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.