Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0017551

Physical Location & Seq

Genomic Coordinates Reverse (-)

60968158 .. 60971237

Gene Structure 3080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0491400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTTAGCAAAGTGTTTGGGAAAACCAAGCAGGAAGCTAATCCCCTGCCAACCTTACACAAATTAAATGAGACACTTGAGATGCTGGAGAAGAAGGAGAAGTTCCTTGGGAAGAAGGCAGCTGCAGAGGTTGAGAAGGCAAAGCAATTTACGCAAGCAAAAAACCGAAATTCTGCAATAAAGTGTTTAAAGAGGAAGAAGCTTTATGAACAGCAAATTGAACAACTTGGAAATTTCCAACTGCGCATTCATGATCAGATGATAATGCTGGAAAGTGCCAACGCTACAACAGAAACAGTTGATGCATTGAGAAGTGGAACAGCTGTAATGAAGGCCATGAACAAGACAACAAATATTGATGATTTGGAGAAAACAATGGATGAGATCAATGACCAGACTGAAAGTATGAAACAGATTCAGGAGGCACTGTCGGCGCCTGTTGGTGCTGCAGCTGATTTTGATGAAGATGAATTGGAAGCAGAACTTGAAGAACTGGAAGAAACTGAGTTGGAGGAAGAGCTTATCCAACCAGCCACAACTGCTCCTGCAACTTCAGTTAGTGTAAATGTCCCGGTCGGCAGGCAGCCAACCAAACCAGCTCCTCAGAGAGTTAACCGTGAGGAAGATGAGCTCGCTGCATTACAGGCAGAGATGGCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 RNase_T

Protein Analysis

220

Amino Acids

24.6

Weight (kDa)

4.8

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	20 - 183	8.1e-45	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50990
fragaria_vesca	FvH4_5g09670
rosa_chinensis	RchiOBHm_Chr7g0188581
rosa_laevigata	RLG00000004682
rosa_roxburghii	Rroxscaffold_3G00266240
rosa_rugosa	Rorug06G0491400 Rorug06G0491500
rosa_samantha	Rh7AG096200 Rh7BG098100 Rh7CG099100 Rh7DG098200
rosa_wichuraiana	Rw7G008320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	169, 232
AcuI	CTGAAG	1 cut(s)	537
AcyI	GRCGYC	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	221, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	8 cut(s)	38, 122, 202, 323, 452, 520, 599, 631
AluI	AGCT	8 cut(s)	38, 122, 202, 323, 452, 520, 599, 631
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	333, 654
ApeKI	GCWGC	6 cut(s)	119, 122, 446, 449, 583, 635
ApoI	RAATTY	2 cut(s)	169, 232
AspLEI	GCGC	2 cut(s)	246, 436
AspS9I	GGNCC	1 cut(s)	655
AsuC2I	CCSGG	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	6 cut(s)	109, 131, 433, 461, 595, 622
BccI	CCATC	1 cut(s)	646
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	2 cut(s)	123, 447
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	6 cut(s)	120, 123, 447, 450, 584, 636
BlsI	GCNGC	6 cut(s)	121, 124, 448, 451, 585, 637
Bme1390I	CCNGG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	2 cut(s)	72, 292
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 443, 526, 556
Bse1I	ACTGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	495, 617
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	6 cut(s)	109, 131, 433, 461, 595, 622
Bsh1285I	CGRYCG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	335, 656
BshNI	GGYRCC	1 cut(s)	433
BsiEI	CGRYCG	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	335, 656
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	253, 384
BspANI	GGCC	2 cut(s)	335, 656
BspCNI	CTCAG	2 cut(s)	496, 616
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	2 cut(s)	127, 451
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	253, 384
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	298, 429, 617
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	156, 581, 633
BstDEI	CTNAG	2 cut(s)	504, 603
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	246, 436
BstKTI	GATC	2 cut(s)	256, 387
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	253, 384
BstMCI	CGRYCG	1 cut(s)	576
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 431, 539, 644, 653
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	2 cut(s)	123, 447
BstV1I	GCAGC	6 cut(s)	109, 131, 433, 461, 595, 622
BsuRI	GGCC	2 cut(s)	335, 656
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	3 cut(s)	156, 581, 633
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	2 cut(s)	246, 436
Cfr13I	GGNCC	1 cut(s)	655
CviAII	CATG	2 cut(s)	251, 337
DdeI	CTNAG	2 cut(s)	504, 603
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	2 cut(s)	255, 386
DpnII	GATC	2 cut(s)	253, 384
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	633
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	633
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	254, 340
FaiI	YATR	4 cut(s)	207, 252, 338, 407
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	2 cut(s)	250, 336
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	6 cut(s)	120, 123, 447, 450, 584, 636
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	6 cut(s)	120, 123, 447, 450, 584, 636
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	2 cut(s)	245, 435
GluI	GCNGC	6 cut(s)	120, 123, 447, 450, 584, 636
GsuI	CTGGAG	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	335, 656
HapII	CCGG	1 cut(s)	572
HhaI	GCGC	2 cut(s)	246, 436
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	254, 340
Hin6I	GCGC	2 cut(s)	244, 434
HinP1I	GCGC	2 cut(s)	244, 434
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	415
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	2 cut(s)	258, 606
Hpy188III	TCNNGA	2 cut(s)	251, 419
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	4 cut(s)	88, 109, 130, 325
HpyCH4III	ACNGT	3 cut(s)	298, 429, 617
HpyCH4V	TGCA	6 cut(s)	125, 176, 305, 449, 548, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 431, 539, 644, 653
HpyF3I	CTNAG	2 cut(s)	504, 603
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	254, 340
HspAI	GCGC	2 cut(s)	244, 434
KasI	GGCGCC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	253, 384
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	2 cut(s)	547, 604
Lsp1109I	GCAGC	6 cut(s)	109, 131, 433, 461, 595, 622
LweI	GCATC	2 cut(s)	72, 292
MalI	GATC	2 cut(s)	255, 386
MboI	GATC	2 cut(s)	253, 384
MboII	GAAGA	8 cut(s)	103, 124, 208, 476, 500, 509, 527, 635
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	6 cut(s)	62, 146, 169, 216, 232, 470
Mly113I	GGCGCC	1 cut(s)	434
MmeI	TCCRAC	3 cut(s)	262, 489, 550
MnlI	CCTC	6 cut(s)	121, 186, 415, 505, 612, 613
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	3 cut(s)	65, 188, 612
MspA1I	CMGCKG	3 cut(s)	122, 323, 452
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	572
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	5 cut(s)	151, 431, 539, 644, 653
NarI	GGCGCC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	253, 384
NlaIII	CATG	2 cut(s)	254, 340
NlaIV	GGNNCC	1 cut(s)	435
NsbI	TGCGCA	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	307
PagI	TCATGA	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	510
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	6 cut(s)	121, 124, 448, 451, 585, 637
PluTI	GGCGCC	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	655
PstI	CTGCAG	2 cut(s)	127, 451
PvuII	CAGCTG	3 cut(s)	122, 323, 452
SacI	GAGCTC	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	65, 188, 612
SatI	GCNGC	6 cut(s)	120, 123, 447, 450, 584, 636
Sau3AI	GATC	2 cut(s)	253, 384
Sau96I	GGNCC	1 cut(s)	655
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	2 cut(s)	72, 292
SfcI	CTRYAG	2 cut(s)	123, 447
SfoI	GGCGCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	6 cut(s)	62, 146, 169, 216, 232, 470
SspDI	GGCGCC	1 cut(s)	433
SspI	AATATT	1 cut(s)	355
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	298, 429, 617
TasI	AATT	6 cut(s)	62, 146, 169, 216, 232, 470
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	3 cut(s)	65, 188, 612
Tru9I	TTAA	3 cut(s)	65, 188, 612
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	6 cut(s)	119, 122, 446, 449, 583, 635
TspDTI	ATGAA	7 cut(s)	222, 239, 344, 353, 422, 477, 483
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	2 cut(s)	169, 232
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.