Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016533

Physical Location & Seq

Genomic Coordinates Forward (+)

63813437 .. 63815737

Gene Structure 2301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGTATACATTCCACATTAACAAGCCCGGCCGCCATTGGATTCGCCTATACTTCTATCCTCTCCCACACCAGACATACAACCTTTCCGACGCAGTTTTCTCGGTGGACACAGACAAGTATGTTCTCTTGCATGACTTTTCTGCCTCGGACAAAGCCACATTGGTGTTCAAAGAATACATTTTCAATGTCTCTGACAATAGATTCTCTCTCCATTTCCGACCAAAGAAGCACTCCTTTGCTTTTGTCAATGCCATTGAGGTTGTCTCTGCTCCAGACTCTATTTTCAATGACTCTGCCACTACTGTTCCCGTAGCCGGAGACTTCAACGGCTTGCAAAACTACGCTTTCCAAGTCCGGTACCGGCTAAATGTGGGAGGGCCATTGGTATCACCTCAAAATGACACATTGTCAAGGACTTGGGAGCCAGACACTCCATACAATGCATTTCCTCAGGGCTCCCAAAACGTGTCAGTTGCTCCGAAAATCGTCAAGTATCTGAAGAGAGGAGACGCCTCCTTGATTGCCCCGAATTCGGTCTATGCAACTGCTCAGCACATGCAGGATTCTTTCACAAGCAACCAGAATTTCAACCTCAGTTGGAAGCTTAGTGTTGAGGAGGACTTTTCCTACTTGATCAGGTTACATTTCTGCGACATTGTGAGCAAGACCCTTGATAACTTGTACTTCAATGTATACATTAATGGCATGATGGCTGTCTCCAATCTTGATCTCTCTTCACTCACCGGCGCGCTATCCACTGCTTTTTACAAAGATTTCGTGCTCAATTCCACAGCGGTCTCCACCTCAAATAACACCATCAACATTCAGATTGGTCCTGGCACTACTCAGTCCGGGACTCATGATGGACTGCTTAATGGAGTGGAGGTCTTGAAATTGAGCAATGTAGCAGAAAGCTTGGATGGATTTTTCGCCGTTGATGGGAAGTACAAGGGTCCGGTGAAATCATCAAACAAAATGAAGATAGTTGCGGGTGTGGGATTGGGAATGGGAGTGACGGCAATGTTCTTAGTTGGCGTGGTTTATATAAGGTGGAAAAGGAGACCTCAAGGTTGGGAAAAGAAAGATAGCTTCTCATCATGGTTGCTTCCTATACATTCCGGTAACTCTAGCTTGTTCTCCAAGTCAAGTAAGTGTACTTCTACAAGATCAAGCAGCATTTTCGGCTCACGCAAGAGCAAGAGTTACTCAACTTATGTTTCTTCCACTTGCTACGGCCGGTCCTTCACTTTCGCTGAGTTACAAGCTGCAACTCAAAATTGGGATGAGAAGGAGGTGATCGGTGTTGGGGGGTTTGGGAAAGTGTACCTTGGGGTGTTGGAAGATAGTACTAAGCTTGCTATCAAACGAGGGAACCCGAACTCTGAGCAAGGTATTAATGAGTTCAGAACAGAAATGGACATGCTCTCCAAGCTAAGACATCGCCACCTTGTTTCACTGATTGGATTCTGTGATGAGAATAATGAGATGATACTGGTGTATGAGTACATGGCTAATGGACCCCTTCGAGACCACCTCTATGGCTCGAACCTGCTTCCATTGTCATGGAAGCAAAGGCTCGAGGTTTGCATTGGCGCTGCTCGTGGTTTGCATTATCTGCATACTGGTGCAGCACAAGGCATTATCCATCGTGATGTCAAGACGACGAATATCCTCCTGGATGAGAATTTCGTTGCAAAAGTAGCTGACTTTGGACTGTCAAAAGCTGCTCCATCGTTGGAACAAACCCATGTCAGCACAGCCGTGAAGGGAAGTTTTGGTTATCTTGATCCTGAGTACTTCAGGAGGCAGCAGCTTACTGAGAAATCCGATGTGTATTCTTTCGGCGTGGTTCTTTTTGAGGCATTATGTGCAAGGCCTGTTATATGCCCCACTCTACCAAGAGAGCAGGTGAGTTTGGCCGAGTGGGCAATGCAATGGCACAGGAAGGGCATGATTGAGAAGATTGTTGACCCTAAAATCGCTAGCTCCATCAACGCTGGTTCGCTGAAGAAGTATGTAGAAGCTGCAGAGAAATGCCTTGCGGAGTATGGTGTGGATAGGCCTGGCATGGGAGATGTGTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGACAGCCTCGCAGATTGATGCTCGAGAAGACAATACTTCGAGTCTCATTTCTTTGGATAAAGCAAGTGAGAAAGATGACACAAACTCAAAGGATGGCTCTGCACTTGGTGGTGCAGTGAGCGAGGATTCTGTAGTCACAGCTGGTGGTTCTCCTCTGTTTGATAAAGGGATTGTCCAGGGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009705 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032879 GO:0036211 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0051049 GO:0051924 GO:0055082 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097272 GO:0097275 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Malectin_like Pkinase_Tyr zf-C3HC4_2

Protein Analysis

766

Amino Acids

84.84

Weight (kDa)

7.01

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	2 - 298	1.5e-25	Malectin-like domain
Malectin	PF11721	121 - 267	1.1e-09	Malectin domain
Pkinase	PF00069	428 - 631	1.1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	430 - 624	5.9e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61350
fragaria_vesca	FvH4_5g14520
malus_domestica	MD14G1205200.v1.1
prunus_persica	Prupe.5G198600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182131
rosa_laevigata	RLG00000005148
rosa_multiflora	Rmu_co8484825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271480
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh7AG048600 Rh7BG048400 Rh7CG049900 Rh7DG047800
rosa_wichuraiana	Rw7G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1897
Acc36I	ACCTGC	2 cut(s)	1557, 1897
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	357
AccI	GTMKAC	2 cut(s)	5, 693
AccII	CGCG	1 cut(s)	749
AciI	CCGC	4 cut(s)	31, 794, 989, 2042
AclWI	GGATC	1 cut(s)	1781
AcoI	YGGCCR	3 cut(s)	28, 1234, 1917
AcsI	RAATTY	3 cut(s)	529, 583, 1684
AcuI	CTGAAG	3 cut(s)	518, 1783, 2027
AcyI	GRCGYC	1 cut(s)	510
AdeI	CACNNNGTG	1 cut(s)	2222
AfaI	GTAC	8 cut(s)	359, 683, 947, 1156, 1325, 1348, 1505, 1796
AfiI	CCNNNNNNNGG	4 cut(s)	314, 532, 939, 2069
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	8 cut(s)	169, 184, 286, 325, 589, 688, 892, 2111
AhdI	GACNNNNNGTC	1 cut(s)	406
AjnI	CCWGG	4 cut(s)	835, 1674, 2062, 2289
AleI	CACNNNNGTG	2 cut(s)	161, 1760
Alw21I	GWGCWC	1 cut(s)	783
AlwI	GGATC	1 cut(s)	1781
Ama87I	CYCGRG	2 cut(s)	1577, 2136
AoxI	GGCC	6 cut(s)	28, 377, 1234, 1874, 1917, 2060
ApeKI	GCWGC	9 cut(s)	1173, 1265, 1595, 1628, 1724, 1807, 1810, 2024, 2104
ApoI	RAATTY	3 cut(s)	529, 583, 1684
AseI	ATTAAT	2 cut(s)	699, 1395
Asp718I	GGTACC	1 cut(s)	357
AspLEI	GCGC	3 cut(s)	749, 751, 1595
AspS9I	GGNCC	5 cut(s)	377, 833, 953, 1239, 1517
AsuC2I	CCSGG	2 cut(s)	27, 853
AsuHPI	GGTGA	5 cut(s)	381, 733, 970, 1306, 1921
AsuNHI	GCTAGC	1 cut(s)	1982
AvaI	CYCGRG	2 cut(s)	1577, 2136
AvaII	GGWCC	4 cut(s)	833, 953, 1239, 1517
AxyI	CCTNAGG	1 cut(s)	450
BaeI	ACNNNNGTAYC	2 cut(s)	1481, 1514
BanI	GGYRCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	458
BarI	GAAGNNNNNNTAC	2 cut(s)	1141, 1173
BauI	CACGAG	1 cut(s)	1599
BbsI	GAAGAC	1 cut(s)	2148
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	9 cut(s)	1185, 1252, 1582, 1640, 1711, 1819, 1822, 2011, 2116
BccI	CCATC	9 cut(s)	703, 824, 857, 914, 932, 1653, 1738, 1997, 2201
BceAI	ACGGC	5 cut(s)	343, 917, 1032, 1249, 1745
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 1162, 1196
BciT130I	CCWGG	4 cut(s)	837, 1676, 2064, 2291
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	2 cut(s)	27, 853
BfaI	CTAG	2 cut(s)	1128, 1983
BfmI	CTRYAG	2 cut(s)	2025, 2244
BfoI	RGCGCY	1 cut(s)	1596
BfuAI	ACCTGC	2 cut(s)	1557, 1897
BglI	GCCNNNNNGGC	1 cut(s)	1925
BlpI	GCTNAGC	1 cut(s)	549
BmcAI	AGTACT	2 cut(s)	1348, 1796
Bme1390I	CCNGG	6 cut(s)	27, 837, 853, 1676, 2064, 2291
Bme18I	GGWCC	4 cut(s)	833, 953, 1239, 1517
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmeT110I	CYCGRG	2 cut(s)	1577, 2136
BmgT120I	GGNCC	5 cut(s)	377, 833, 953, 1239, 1517
BmiI	GGNNCC	6 cut(s)	359, 423, 457, 954, 1373, 1519
BmrFI	CCNGG	6 cut(s)	27, 837, 853, 1676, 2064, 2291
BmsI	GCATC	1 cut(s)	2122
BmtI	GCTAGC	1 cut(s)	1986
BpiI	GAAGAC	1 cut(s)	2148
BplI	GAGNNNNNCTC	6 cut(s)	248, 280, 1518, 1550, 2105, 2137
BpmI	CTGGAG	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	1050
BpuMI	CCSGG	2 cut(s)	27, 853
BsaHI	GRCGYC	1 cut(s)	510
BsaI	GGTCTC	3 cut(s)	802, 1054, 1521
BsaJI	CCNNGG	3 cut(s)	144, 1327, 2290
BsaWI	WCCGGW	3 cut(s)	354, 955, 1118
BsaXI	ACNNNNNCTCC	4 cut(s)	870, 900, 1409, 1439
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 532, 939, 2069
Bse118I	RCCGGY	3 cut(s)	360, 743, 1236
Bse1I	ACTGG	2 cut(s)	1497, 1627
Bse21I	CCTNAGG	1 cut(s)	450
Bse3DI	GCAATG	4 cut(s)	907, 1026, 1935, 1940
BseBI	CCWGG	4 cut(s)	837, 1676, 2064, 2291
BseDI	CCNNGG	3 cut(s)	144, 1327, 2290
BseGI	GGATG	4 cut(s)	925, 1288, 1684, 2212
BseLI	CCNNNNNNNGG	4 cut(s)	314, 532, 939, 2069
BseMI	GCAATG	4 cut(s)	907, 1026, 1935, 1940
BseMII	CTCAG	8 cut(s)	464, 563, 607, 860, 1245, 1374, 1782, 1809
BseNI	ACTGG	2 cut(s)	1497, 1627
BsePI	GCGCGC	1 cut(s)	747
BseRI	GAGGAG	3 cut(s)	519, 629, 2256
BseX3I	CGGCCG	2 cut(s)	28, 1234
BseXI	GCAGC	9 cut(s)	1185, 1252, 1582, 1640, 1711, 1819, 1822, 2011, 2116
BsgI	GTGCAG	3 cut(s)	1647, 2199, 2247
Bsh1236I	CGCG	1 cut(s)	749
Bsh1285I	CGRYCG	2 cut(s)	31, 1237
BshFI	GGCC	6 cut(s)	30, 379, 1236, 1876, 1919, 2062
BshNI	GGYRCC	1 cut(s)	357
BsiEI	CGRYCG	2 cut(s)	31, 1237
BsiHKAI	GWGCWC	1 cut(s)	783
BsiHKCI	CYCGRG	2 cut(s)	1577, 2136
BsiSI	CCGG	9 cut(s)	27, 315, 355, 361, 744, 852, 956, 1119, 1237
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	4 cut(s)	314, 532, 939, 2069
BsmBI	CGTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	868
BsnI	GGCC	6 cut(s)	30, 379, 1236, 1876, 1919, 2062
Bso31I	GGTCTC	3 cut(s)	802, 1054, 1521
BsoBI	CYCGRG	2 cut(s)	1577, 2136
Bsp1286I	GDGCHC	2 cut(s)	458, 783
Bsp143I	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
Bsp1720I	GCTNAGC	1 cut(s)	549
BspACI	CCGC	4 cut(s)	31, 794, 989, 2042
BspANI	GGCC	6 cut(s)	30, 379, 1236, 1876, 1919, 2062
BspCNI	CTCAG	8 cut(s)	463, 562, 606, 859, 1246, 1375, 1783, 1810
BspFNI	CGCG	1 cut(s)	749
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	6 cut(s)	359, 423, 457, 954, 1373, 1519
BspMAI	CTGCAG	1 cut(s)	2029
BspMI	ACCTGC	2 cut(s)	1557, 1897
BspOI	GCTAGC	1 cut(s)	1986
BspPI	GGATC	1 cut(s)	1781
BspT107I	GGYRCC	1 cut(s)	357
BspTNI	GGTCTC	3 cut(s)	802, 1054, 1521
BsrDI	GCAATG	4 cut(s)	907, 1026, 1935, 1940
BsrFI	RCCGGY	3 cut(s)	360, 743, 1236
BsrI	ACTGG	2 cut(s)	1497, 1627
BssAI	RCCGGY	3 cut(s)	360, 743, 1236
BssECI	CCNNGG	3 cut(s)	144, 1327, 2290
BssHII	GCGCGC	1 cut(s)	747
BssMI	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
BssNAI	GTATAC	2 cut(s)	6, 694
BssNI	GRCGYC	1 cut(s)	510
BssSI	CACGAG	1 cut(s)	1599
BssT1I	CCWWGG	1 cut(s)	1327
Bst1107I	GTATAC	2 cut(s)	6, 694
Bst2BI	CACGAG	1 cut(s)	1599
Bst2UI	CCWGG	4 cut(s)	837, 1676, 2064, 2291
Bst4CI	ACNGT	2 cut(s)	304, 1716
Bst6I	CTCTTC	2 cut(s)	494, 739
BstACI	GRCGYC	1 cut(s)	510
BstAPI	GCANNNNNTGC	2 cut(s)	1615, 1868
BstC8I	GCNNGC	4 cut(s)	332, 749, 1356, 1984
BstF5I	GGATG	4 cut(s)	925, 1288, 1684, 2212
BstFNI	CGCG	1 cut(s)	749
BstH2I	RGCGCY	1 cut(s)	1596
BstHHI	GCGC	3 cut(s)	749, 751, 1595
BstKTI	GATC	5 cut(s)	636, 730, 1169, 1299, 1789
BstMBI	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
BstMCI	CGRYCG	2 cut(s)	31, 1237
BstMWI	GCNNNNNNNGC	6 cut(s)	1182, 1429, 1615, 1700, 1868, 1925
BstNI	CCWGG	4 cut(s)	837, 1676, 2064, 2291
BstNSI	RCATGY	2 cut(s)	559, 1423
BstSCI	CCNGG	6 cut(s)	25, 835, 851, 1674, 2062, 2289
BstSFI	CTRYAG	2 cut(s)	2025, 2244
BstUI	CGCG	1 cut(s)	749
BstV1I	GCAGC	9 cut(s)	1185, 1252, 1582, 1640, 1711, 1819, 1822, 2011, 2116
BstV2I	GAAGAC	1 cut(s)	2148
BstXI	CCANNNNNNTGG	2 cut(s)	1538, 1563
BstZ17I	GTATAC	2 cut(s)	6, 694
BstZI	CGGCCG	2 cut(s)	28, 1234
Bsu36I	CCTNAGG	1 cut(s)	450
BsuRI	GGCC	6 cut(s)	30, 379, 1236, 1876, 1919, 2062
BtgZI	GCGATG	1 cut(s)	1424
BtsCI	GGATG	4 cut(s)	925, 1288, 1684, 2212
BtsI	GCAGTG	2 cut(s)	756, 2235
BtsIMutI	CAGTG	3 cut(s)	756, 1454, 2235
BveI	ACCTGC	2 cut(s)	1557, 1897
Cac8I	GCNNGC	4 cut(s)	332, 749, 1356, 1984
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	3 cut(s)	749, 751, 1595
Cfr10I	RCCGGY	3 cut(s)	360, 743, 1236
Cfr13I	GGNCC	5 cut(s)	377, 833, 953, 1239, 1517
CseI	GACGC	2 cut(s)	98, 518
Csp6I	GTAC	8 cut(s)	358, 682, 946, 1155, 1324, 1347, 1504, 1795
CviQI	GTAC	8 cut(s)	358, 682, 946, 1155, 1324, 1347, 1504, 1795
DpnI	GATC	5 cut(s)	635, 729, 1168, 1298, 1788
DpnII	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
DraIII	CACNNNGTG	1 cut(s)	2222
DriI	GACNNNNNGTC	1 cut(s)	406
EaeI	YGGCCR	3 cut(s)	28, 1234, 1917
EagI	CGGCCG	2 cut(s)	28, 1234
Eam1104I	CTCTTC	2 cut(s)	494, 739
Eam1105I	GACNNNNNGTC	1 cut(s)	406
EarI	CTCTTC	2 cut(s)	494, 739
EclXI	CGGCCG	2 cut(s)	28, 1234
Eco130I	CCWWGG	1 cut(s)	1327
Eco147I	AGGCCT	2 cut(s)	1876, 2062
Eco24I	GRGCYC	1 cut(s)	458
Eco31I	GGTCTC	3 cut(s)	802, 1054, 1521
Eco47I	GGWCC	4 cut(s)	833, 953, 1239, 1517
Eco52I	CGGCCG	2 cut(s)	28, 1234
Eco57I	CTGAAG	3 cut(s)	518, 1783, 2027
Eco81I	CCTNAGG	1 cut(s)	450
Eco88I	CYCGRG	2 cut(s)	1577, 2136
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	4 cut(s)	835, 1674, 2062, 2289
EcoT14I	CCWWGG	1 cut(s)	1327
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	1327
Esp3I	CGTCTC	1 cut(s)	501
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 1311, 1343
FaqI	GGGAC	1 cut(s)	868
FauI	CCCGC	1 cut(s)	982
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	2 cut(s)	5, 693
FokI	GGATG	4 cut(s)	932, 1295, 1691, 2219
FriOI	GRGCYC	1 cut(s)	458
FspBI	CTAG	2 cut(s)	1128, 1983
GlaI	GCGC	3 cut(s)	748, 750, 1594
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	1596
HaeIII	GGCC	6 cut(s)	30, 379, 1236, 1876, 1919, 2062
HapII	CCGG	9 cut(s)	27, 315, 355, 361, 744, 852, 956, 1119, 1237
HgaI	GACGC	2 cut(s)	98, 518
HhaI	GCGC	3 cut(s)	749, 751, 1595
Hin1I	GRCGYC	1 cut(s)	510
Hin6I	GCGC	3 cut(s)	747, 749, 1593
HinP1I	GCGC	3 cut(s)	747, 749, 1593
HincII	GTYRAC	1 cut(s)	1969
HindII	GTYRAC	1 cut(s)	1969
HindIII	AAGCTT	3 cut(s)	602, 913, 1352
HinfI	GANTC	9 cut(s)	40, 201, 275, 290, 563, 856, 1464, 2155, 2240
HpaII	CCGG	9 cut(s)	27, 315, 355, 361, 744, 852, 956, 1119, 1237
HphI	GGTGA	5 cut(s)	381, 733, 970, 1306, 1921
Hpy166II	GTNNAC	6 cut(s)	6, 106, 694, 1155, 1324, 1969
Hpy8I	GTNNAC	6 cut(s)	6, 106, 694, 1155, 1324, 1969
Hpy99I	CGWCG	2 cut(s)	92, 1666
HpyAV	CCTTC	5 cut(s)	1252, 1282, 1532, 1759, 1939
HpyCH4III	ACNGT	2 cut(s)	304, 1716
HpyCH4IV	ACGT	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1182, 1429, 1615, 1700, 1868, 1925
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	1 cut(s)	510
HspAI	GCGC	3 cut(s)	747, 749, 1593
KpnI	GGTACC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
LmnI	GCTCC	6 cut(s)	274, 421, 461, 481, 1732, 1991
Lsp1109I	GCAGC	9 cut(s)	1185, 1252, 1582, 1640, 1711, 1819, 1822, 2011, 2116
LweI	GCATC	1 cut(s)	2122
MaeI	CTAG	2 cut(s)	1128, 1983
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	6 cut(s)	639, 1012, 1121, 1202, 1257, 2248
MalI	GATC	5 cut(s)	635, 729, 1168, 1298, 1788
MboI	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
MboII	GAAGA	8 cut(s)	511, 726, 991, 1212, 1352, 1972, 2020, 2153
MhlI	GDGCHC	2 cut(s)	458, 783
MluCI	AATT	6 cut(s)	529, 583, 784, 893, 1276, 1684
MlyI	GAGTC	4 cut(s)	269, 284, 850, 2164
MmeI	TCCRAC	5 cut(s)	111, 241, 578, 1317, 1716
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	4 cut(s)	18, 699, 873, 1395
MslI	CAYNNNNRTG	6 cut(s)	161, 1536, 1561, 1623, 1650, 1760
MspA1I	CMGCKG	2 cut(s)	794, 2255
MspI	CCGG	9 cut(s)	27, 315, 355, 361, 744, 852, 956, 1119, 1237
MspR9I	CCNGG	6 cut(s)	27, 837, 853, 1676, 2064, 2291
MvaI	CCWGG	4 cut(s)	837, 1676, 2064, 2291
MvnI	CGCG	1 cut(s)	749
MwoI	GCNNNNNNNGC	6 cut(s)	1182, 1429, 1615, 1700, 1868, 1925
NciI	CCSGG	2 cut(s)	27, 853
NdeII	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
NheI	GCTAGC	1 cut(s)	1982
NlaIV	GGNNCC	6 cut(s)	359, 423, 457, 954, 1373, 1519
NmeAIII	GCCGAG	1 cut(s)	1945
NmuCI	GTSAC	2 cut(s)	1012, 2248
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	2 cut(s)	559, 1423
OliI	CACNNNNGTG	2 cut(s)	161, 1760
PaeR7I	CTCGAG	2 cut(s)	1577, 2136
PagI	TCATGA	1 cut(s)	859
PaqCI	CACCTGC	1 cut(s)	1897
PauI	GCGCGC	1 cut(s)	747
PceI	AGGCCT	2 cut(s)	1876, 2062
PfeI	GAWTC	5 cut(s)	40, 201, 563, 1464, 2240
PfoI	TCCNGGA	2 cut(s)	851, 1674
PleI	GAGTC	4 cut(s)	269, 284, 850, 2163
PpsI	GAGTC	4 cut(s)	269, 284, 850, 2163
PshBI	ATTAAT	2 cut(s)	699, 1395
Psp6I	CCWGG	4 cut(s)	835, 1674, 2062, 2289
PspGI	CCWGG	4 cut(s)	835, 1674, 2062, 2289
PspN4I	GGNNCC	6 cut(s)	359, 423, 457, 954, 1373, 1519
PspPI	GGNCC	5 cut(s)	377, 833, 953, 1239, 1517
PspXI	VCTCGAGB	1 cut(s)	1577
PstI	CTGCAG	1 cut(s)	2029
PteI	GCGCGC	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	2255
RsaI	GTAC	8 cut(s)	359, 683, 947, 1156, 1325, 1348, 1505, 1796
RsaNI	GTAC	8 cut(s)	358, 682, 946, 1155, 1324, 1347, 1504, 1795
RseI	CAYNNNNRTG	6 cut(s)	161, 1536, 1561, 1623, 1650, 1760
SaqAI	TTAA	4 cut(s)	18, 699, 873, 1395
Sau3AI	GATC	5 cut(s)	633, 727, 1166, 1296, 1786
Sau96I	GGNCC	5 cut(s)	377, 833, 953, 1239, 1517
ScaI	AGTACT	2 cut(s)	1348, 1796
SchI	GAGTC	4 cut(s)	269, 284, 850, 2164
ScrFI	CCNGG	6 cut(s)	27, 837, 853, 1676, 2064, 2291
SduI	GDGCHC	2 cut(s)	458, 783
SfaNI	GCATC	1 cut(s)	2122
SfcI	CTRYAG	2 cut(s)	2025, 2244
Sfr274I	CTCGAG	2 cut(s)	1577, 2136
SgrAI	CRCCGGYG	1 cut(s)	743
SinI	GGWCC	4 cut(s)	833, 953, 1239, 1517
SlaI	CTCGAG	2 cut(s)	1577, 2136
SmiMI	CAYNNNNRTG	6 cut(s)	161, 1536, 1561, 1623, 1650, 1760
SmlI	CTYRAG	3 cut(s)	1065, 1577, 2136
SmoI	CTYRAG	3 cut(s)	1065, 1577, 2136
Sse9I	AATT	6 cut(s)	529, 583, 784, 893, 1276, 1684
SseBI	AGGCCT	2 cut(s)	1876, 2062
SsiI	CCGC	4 cut(s)	31, 794, 989, 2042
SspMI	CTAG	2 cut(s)	1128, 1983
StuI	AGGCCT	2 cut(s)	1876, 2062
StyD4I	CCNGG	6 cut(s)	25, 835, 851, 1674, 2062, 2289
StyI	CCWWGG	1 cut(s)	1327
TaaI	ACNGT	2 cut(s)	304, 1716
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	5 cut(s)	1525, 1544, 1578, 2137, 2153
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	6 cut(s)	529, 583, 784, 893, 1276, 1684
TatI	WGTACW	6 cut(s)	681, 945, 1154, 1346, 1503, 1794
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	5 cut(s)	40, 201, 563, 1464, 2240
Tru1I	TTAA	4 cut(s)	18, 699, 873, 1395
Tru9I	TTAA	4 cut(s)	18, 699, 873, 1395
TscAI	CASTG	3 cut(s)	763, 1461, 2235
TseFI	GTSAC	2 cut(s)	1012, 2248
TseI	GCWGC	9 cut(s)	1173, 1265, 1595, 1628, 1724, 1807, 1810, 2024, 2104
Tsp45I	GTSAC	2 cut(s)	1012, 2248
TspDTI	ATGAA	1 cut(s)	992
TspRI	CASTG	3 cut(s)	763, 1461, 2235
VpaK11BI	GGWCC	4 cut(s)	833, 953, 1239, 1517
VspI	ATTAAT	2 cut(s)	699, 1395
XapI	RAATTY	3 cut(s)	529, 583, 1684
XceI	RCATGY	2 cut(s)	559, 1423
XhoI	CTCGAG	2 cut(s)	1577, 2136
XmiI	GTMKAC	2 cut(s)	5, 693
XspI	CTAG	2 cut(s)	1128, 1983
ZrmI	AGTACT	2 cut(s)	1348, 1796
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.