Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3319121 .. 3332023

Gene Structure 12903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4170 bp

ATGTCCACCGAGGCAGAGCCGTCGTCGTCGTCGTCATCGTCGACGTCGGGGTTCATGACCGACGGCCCTGATGACGTGGAAGACTACATTTCGGCTAATGAAGGAGAACCGGCATTGCCCTGGGACATATTTAGTCATGTTTTTGATCTTGTGCAGAAGGGAAACCAGGCTTTTCGAGAGAACCGATTTGAGGAGGCAATTAGTTCCTACTCAAGAGCCAATTACATTAAACCATGTGACCCTGTTATTCTTGGCAACCGAACTGCTGCTTATATCAGGATCAGTAAATTCCTTAAACGCATACCGGCGTCGGCTTCTGAATATAGAGCACGGACTGGATTGGATCCTACAATACATGCTGAACTTGCTTTAAAGGATGTGGAGAAGCTAATCAACCTCCGAAGTAATTCAGCAAAACCATACATGTTGAAAGCTGAAGCTCTAAGTTTGCTGGAGAAATATGAAATGGCCCGGGATATTATCTTATGTGGTCTTCATGTTGACCCTTTAAGCAATCCTCTTCGGACAGCTCTTCAGAATTTGGAGAGTATACAAGTTAGCATGACAGGGAAGATAAGCCATAGTAAACCAGAACGAAAAGCAGAACGCAGCGATGATTTTGATTGCACGTTATGTTTCAAGTTACTCTATGAACCTGTGACAACGCCTTGTGGACATTCCTTTTGTCGATCATGCTTATTTCAGTCAATGGATCAAGGTAACAAATGTCCATTATGCCGAACCGTTCTGTTCATTAGTCCTAGAACATGTGCAATCAGTGTGACACTTAACGACATTATACAAAAGAACTTCCCAGAGGAATTTGCTGAAAGGAAGTCAGAGAATGATACAATGACAAACTTTGGTGCTGATTTGATGCCACTCTTTGTAATGGATGTTGTCCTTCCTTTTCAGAAGTTTCCACTACACATTTTTGAGCCTCGATATAGACTTATGGTGAGGAGGATAATGGAAGGCAACCGTCGGATGGGAATGGTCATCATCGATTCTACAACAGGTTCCATAGCTGATTTTGCTTGTGAGGTGGAAATTACTGAGTGCGAACCGCTTCCAGATGGGCGTTTCTATTTAGAGATTGAAAGTCGCCGAAGGTTTCGCATAATTCGATCTTGGGACCAAGATGGGTACCGAGTTGCAGAGATTGAATGGGTACAGGATATATGCCCGCCAGAAGGATCTAGAGAGAGAACAGAATTGCAGGAATTGACGAATAATGCAGCAGAATATGCTCGCTTATGGATAGGGCGTGGTAAAAGAGCAGCAAGTCGAGATCGAAGACGACTTGAGAAACTTCTCAGTGTAGAAGCAATGATGCCATCAGTTCAAGATCCTGAGCGCTTCAGCTTCTGGCTGGCTTCCCTTTCAAACCGACGTCCGCACGAAAGATTGGATCTCTTATGCATGAGAGATACAAAAGAGAGAATACAACGGGGACTAATATATCTCCGAGCAGAAGAGCAAGGTTGTCAAATAATGGGGAGAGTGACAAATGGTGCATCATCAAATGTTCCTCCACAACTCTCCCCCCTCCCCTTTCTTTTCCTTCTCTTCCTTTTCACCTTCTTCAGCAATCTCATAAACAATGTCTCCGCCAAAGGCCATGCAAATTCTTCGGCTACATTGACATTCACGCCTTCTGATAACTTCCTCATCGACTGTGGCGCTCCGCAAGAAGCCAAGCTCCCTGATGGCAGGACATTCAAATCGGACCGCGAATCGGCTGACCTCTTGTCCACAAATGAGGACTTTAAGGCTTCAGCTGACTCCATCAATGCCAATGTCTCTTCATCCGTTCCACCGGATGCAATAGTTCTATTTAAAACGGCGAGGATCTTCTCCGAGGAATCCATGTATACATTCCACATCAACAAGCCCGGCCGCCATTGGATTCGCCTATACTTCTATCCTCTCCCACACCAGACATACAACCTTTCCGACGCAGTTTTCTCGGTGGACACAGACAAGTATGTTCTCTTGCATGACTTTTCTGCCTCGGACAAAGCCACACTGGTGTTCAAAGAATACCTTTTCAATGTCTCTGACAACAGATTCTCTCTCCATTTCCGACCAAAGAAGCACTCCTTTGCTTTTGTCAATGCCATTGAGGTTGTCTCTGCCCCAGACTCTATTTTCAATGACTCTGCCACCACTGTTCCCGTAGCCGGAGACTTCAACGGCTTGCAAAACTACGCTTTTCAAGTCCGGTACCGGTTAAATGTGGGAGGGCCATTGGTATCACCTCAAAATGACACATTGTCAAGGACTTGGGAGCCAGACACTCCATACAATGCATTTCCTCAGGGCTCTCAAAACGTGTCAGTTGCTCCGAAAATCGTCAAGTATCTGAAGAGAGGAGATGCCTCCTTGATTGCCCCGAATTCGGTCTATGCAACTGCTCAGCACATGCAGGATTCTTTCACAAGCAACCAGAATTTCAACCTCAGTTGGAAGCTCAGTGTTGAGGAGGACTTTTCCTACTTGATCAGATTACATTTCTGCGACATTGTGAGCAAGACCCTTGATAACTTGTACTTCAATGTATACATTAATGGCATGATGGCTGTCTCCAATCTTGATCTCTCTTCACTCACCGGCGCGCTATCCACTGCTTTTTACAAAGATTTCGTGCTCAATTCCACAGCGGTCTCCACCTCAAATAACACCATCAACATTCAGATTGGTCCTGGCACTACTCAGTCCGGGACTCATGATGGACTGCTTAATGGAGTGGAGGTCTTGAAATTGAGCAATGAAGCAGAAAGCTTGGATGGATTTTTCGCGGTTGATGGGAAGTACAAGGGTCCGGTGAATTCATCAAACAAAATGAAGATAGTTGCGGGTGTGGGATTGGGAATGGGAGTGACGGCAATGTTCTTAGTTGGCGTGGTTTATATAAGGTGGAAAAGGAGACCTCAAGGTTGGGAAAAGAAAGATAGCTTCTCATCATGGTTGCTTCCTATACATTCCGGTAACTCTAGCTTGTTCTCCAAGTCAAGTAAGTGTACTTCTAGAAGATCAAGCAGCATTTTCGGCTCACGCAAGAGCAAGAGTTACTCAACTTATGTTTCTTCCACTTGCTACGGCCGGTCCTTCACTTTCGCTGAGTTACAAGCTGCAACTCAAAATTGGGATGAGAAGGAGGTGATCGGTGTTGGGGGGTTCGGGAAAGTGTACCTTGGGGTGTTGGAAGATGGTACTAAGCTGGCTATCAAACGAGGGAACCCGAACTCTGAGCAAGGTATTAATGAGTTCAGAACAGAAATGGACATGCTCTCCAAGCTAAGACATCGCCACCTTGTTTCACTGATTGGATTCTGTGATGAGAATAATGAGATGATACTAGTGTATGAGTACATGGCTAATGGACCCCTTCGAGACCACCTCTATGGCTCGAACCTGCTTCCATTGTCATGGAAGCAAAGGCTCGAGGTTTGCATTGGCGCTGCTCGTGGTTTGCATTATCTGCATACTGGTGCAGCACAAGGCATTATCCATCGTGATGTCAAGACGACGAATATCCTCCTGGATGAGAATTTCGTTGCAAAAGTAGCTGACTTTGGACTGTCAAAAGCTGCTCCATCGTTGGAACAAACCCATGTCAGCACAGCCGTGAAGGGAAGTTTTGGTTATCTTGATCCTGAGTACTTCAGGAGGCAGCAGCTTACTGAGAAATCCGATGTGTATTCTTTCGGCGTGGTTCTTTTTGAGGCATTATGTGCAAGGCCTGTTATATGCCCCACTCTACCAAGAGAGCAGGTGAGTTTGGCCGAGTGGGCAATGCAATGGCACAGGAAGGGCATGATTGAAAAGATTGTTGACCCTCAAATCGCTAGCTCCATCAACGCTGGTTCGCTGAAGAAGTATGTAGAAGCTGCAGAGAAATGCCTTGCGGAGTATGGTGTGGATAGGCCTGGCATAGGAGATGTGTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGACAGCCTCACAGATTGATGCTCGAGAAGACAATACTTCGAGTCTCATTTCTTTGGATAAAGCAAGTGAGAAAGATGACACAAACTCAAAGGATGGCTCTGCACTTGGTGGTGCAGTGAGTGAGGATTCTGTAGTCACAGCTGGTGGTTCTCCTCTGTTTGATAAAGGGAATGTCCAGGGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009705 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032879 GO:0036211 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0051049 GO:0051924 GO:0055082 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097272 GO:0097275 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Malectin_like Pkinase_Tyr zf-C3HC4_2

Protein Analysis

1389

Amino Acids

155.35

Weight (kDa)

6.13

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	207 - 248	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	208 - 247	1.3e-07	Ring finger domain
zf-C3HC4_2	PF13923	209 - 246	1.6e-12	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	209 - 246	3.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	209 - 244	1.8e-06	RING-type zinc-finger
zf-RING_5	PF14634	209 - 248	4.6e-06	zinc-RING finger domain
zf-C3HC4_4	PF15227	209 - 246	6.4e-06	zinc finger of C3HC4-type, RING
LON_substr_bdg	PF02190	293 - 489	9.1e-27	ATP-dependent protease La (LON) substrate-binding domain
Malectin_like	PF12819	558 - 921	4.5e-30	Malectin-like domain
Malectin	PF11721	744 - 890	2.6e-09	Malectin domain
Pkinase	PF00069	1051 - 1253	2.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1053 - 1247	2.9e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61350
fragaria_vesca	FvH4_5g14520
malus_domestica	MD14G1205200.v1.1
prunus_persica	Prupe.5G198600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182131
rosa_laevigata	RLG00000005148
rosa_multiflora	Rmu_co8484825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271480
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh7AG048600 Rh7BG048400 Rh7CG049900 Rh7DG047800
rosa_wichuraiana	Rw7G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3766
AatII	GACGTC	2 cut(s)	47, 1396
Acc36I	ACCTGC	2 cut(s)	3426, 3766
Acc65I	GGTACC	2 cut(s)	1146, 2226
AccB1I	GGYRCC	2 cut(s)	1146, 2226
AccI	GTMKAC	4 cut(s)	41, 550, 1874, 2562
AccII	CGCG	3 cut(s)	1734, 2618, 2801
AclWI	GGATC	9 cut(s)	287, 338, 351, 720, 1204, 1343, 1419, 1859, 3650
AcoI	YGGCCR	3 cut(s)	1897, 3103, 3786
AcsI	RAATTY	8 cut(s)	287, 538, 821, 1627, 2398, 2452, 2830, 3553
AcuI	CTGAAG	8 cut(s)	456, 518, 1345, 1570, 1761, 2387, 3652, 3896
AcyI	GRCGYC	3 cut(s)	44, 308, 1393
AdeI	CACNNNGTG	1 cut(s)	4091
AfeI	AGCGCT	1 cut(s)	1358
AfiI	CCNNNNNNNGG	7 cut(s)	190, 988, 1193, 1738, 2183, 2401, 3938
AflIII	ACRYGT	3 cut(s)	423, 767, 2334
AgeI	ACCGGT	1 cut(s)	2229
AhdI	GACNNNNNGTC	2 cut(s)	1750, 2275
AhlI	ACTAGT	1 cut(s)	3361
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	6 cut(s)	119, 165, 2704, 3543, 3931, 4158
AleI	CACNNNNGTG	2 cut(s)	2030, 3629
Alw21I	GWGCWC	2 cut(s)	331, 2652
AlwI	GGATC	9 cut(s)	287, 338, 351, 720, 1204, 1343, 1419, 1859, 3650
AlwNI	CAGNNNCTG	1 cut(s)	1368
Ama87I	CYCGRG	3 cut(s)	471, 3446, 4005
Aor51HI	AGCGCT	1 cut(s)	1358
AoxI	GGCC	9 cut(s)	64, 468, 1618, 1897, 2246, 3103, 3743, 3786, 3929
ApoI	RAATTY	8 cut(s)	287, 538, 821, 1627, 2398, 2452, 2830, 3553
ArsI	GACNNNNNNTTYG	2 cut(s)	666, 698
AseI	ATTAAT	2 cut(s)	2568, 3264
AsiGI	ACCGGT	1 cut(s)	2229
Asp700I	GAANNNNTTC	2 cut(s)	406, 1068
Asp718I	GGTACC	2 cut(s)	1146, 2226
AspLEI	GCGC	5 cut(s)	1359, 1685, 2618, 2620, 3464
AspS9I	GGNCC	9 cut(s)	65, 469, 1135, 1729, 2246, 2702, 2822, 3108, 3386
AsuC2I	CCSGG	4 cut(s)	472, 473, 1896, 2722
AsuHPI	GGTGA	7 cut(s)	970, 1570, 2250, 2602, 2839, 3175, 3790
AsuNHI	GCTAGC	1 cut(s)	3851
AvaI	CYCGRG	3 cut(s)	471, 3446, 4005
AvaII	GGWCC	6 cut(s)	1135, 1729, 2702, 2822, 3108, 3386
AxyI	CCTNAGG	1 cut(s)	2319
BaeI	ACNNNNGTAYC	2 cut(s)	3350, 3383
BamHI	GGATCC	1 cut(s)	343
BanI	GGYRCC	2 cut(s)	1146, 2226
BanII	GRGCYC	1 cut(s)	2327
BarI	GAAGNNNNNNTAC	2 cut(s)	3010, 3042
BauI	CACGAG	1 cut(s)	3468
BbsI	GAAGAC	4 cut(s)	87, 485, 1303, 4017
Bbv12I	GWGCWC	2 cut(s)	331, 2652
BceAI	ACGGC	7 cut(s)	4, 79, 1860, 2212, 2901, 3118, 3614
BcgI	CGANNNNNNTGC	7 cut(s)	37, 1614, 1648, 1950, 1984, 3031, 3065
BciT130I	CCWGG	6 cut(s)	121, 167, 2706, 3545, 3933, 4160
BclI	TGATCA	1 cut(s)	2502
BcnI	CCSGG	4 cut(s)	472, 473, 1896, 2722
BcuI	ACTAGT	1 cut(s)	3361
BfaI	CTAG	6 cut(s)	762, 1200, 2997, 3030, 3362, 3852
BfmI	CTRYAG	2 cut(s)	3894, 4113
BfoI	RGCGCY	3 cut(s)	1360, 1686, 3465
BfuAI	ACCTGC	2 cut(s)	3426, 3766
BglI	GCCNNNNNGGC	1 cut(s)	3794
BlpI	GCTNAGC	1 cut(s)	2418
BmcAI	AGTACT	1 cut(s)	3665
Bme18I	GGWCC	6 cut(s)	1135, 1729, 2702, 2822, 3108, 3386
BmeRI	GACNNNNNGTC	2 cut(s)	1750, 2275
BmeT110I	CYCGRG	3 cut(s)	471, 3446, 4005
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	9 cut(s)	65, 469, 1135, 1729, 2246, 2702, 2822, 3108, 3386
BmiI	GGNNCC	9 cut(s)	345, 1021, 1136, 1148, 2228, 2292, 2823, 3242, 3388
BmsI	GCATC	6 cut(s)	867, 1323, 1526, 1813, 2368, 3991
BmtI	GCTAGC	1 cut(s)	3855
BpiI	GAAGAC	4 cut(s)	87, 485, 1303, 4017
BplI	GAGNNNNNCTC	6 cut(s)	2117, 2149, 3387, 3419, 3974, 4006
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	1353
Bpu1102I	GCTNAGC	1 cut(s)	2418
BpuEI	CTTGAG	3 cut(s)	196, 1325, 2919
BpuMI	CCSGG	4 cut(s)	472, 473, 1896, 2722
Bsa29I	ATCGAT	1 cut(s)	1005
BsaHI	GRCGYC	3 cut(s)	44, 308, 1393
BsaI	GGTCTC	3 cut(s)	2671, 2923, 3390
BsaJI	CCNNGG	8 cut(s)	9, 119, 120, 471, 1860, 2013, 3196, 4159
BsaWI	WCCGGW	5 cut(s)	1819, 2223, 2229, 2824, 2987
BsaXI	ACNNNNNCTCC	6 cut(s)	1592, 1622, 2739, 2769, 3278, 3308
Bsc4I	CCNNNNNNNGG	7 cut(s)	190, 988, 1193, 1738, 2183, 2401, 3938
Bse118I	RCCGGY	5 cut(s)	109, 304, 2229, 2612, 3105
Bse1I	ACTGG	3 cut(s)	340, 2034, 3496
Bse21I	CCTNAGG	1 cut(s)	2319
Bse3DI	GCAATG	6 cut(s)	113, 1335, 2776, 2895, 3804, 3809
BseBI	CCWGG	6 cut(s)	121, 167, 2706, 3545, 3933, 4160
BseCI	ATCGAT	1 cut(s)	1005
BseDI	CCNNGG	8 cut(s)	9, 119, 120, 471, 1860, 2013, 3196, 4159
BseGI	GGATG	9 cut(s)	382, 901, 993, 1808, 1828, 2794, 3157, 3553, 4081
BseLI	CCNNNNNNNGG	7 cut(s)	190, 988, 1193, 1738, 2183, 2401, 3938
BseMI	GCAATG	6 cut(s)	113, 1335, 2776, 2895, 3804, 3809
BseNI	ACTGG	3 cut(s)	340, 2034, 3496
BsePI	GCGCGC	1 cut(s)	2616
BseRI	GAGGAG	5 cut(s)	206, 976, 2388, 2498, 4125
BseX3I	CGGCCG	2 cut(s)	1897, 3103
BsgI	GTGCAG	4 cut(s)	173, 3516, 4068, 4116
Bsh1236I	CGCG	3 cut(s)	1734, 2618, 2801
Bsh1285I	CGRYCG	2 cut(s)	1900, 3106
BshFI	GGCC	9 cut(s)	66, 470, 1620, 1899, 2248, 3105, 3745, 3788, 3931
BshNI	GGYRCC	2 cut(s)	1146, 2226
BshTI	ACCGGT	1 cut(s)	2229
BshVI	ATCGAT	1 cut(s)	1005
BsiEI	CGRYCG	2 cut(s)	1900, 3106
BsiHKAI	GWGCWC	2 cut(s)	331, 2652
BsiHKCI	CYCGRG	3 cut(s)	471, 3446, 4005
BslFI	GGGAC	4 cut(s)	137, 1148, 1467, 2737
BslI	CCNNNNNNNGG	7 cut(s)	190, 988, 1193, 1738, 2183, 2401, 3938
BsmFI	GGGAC	4 cut(s)	137, 1148, 1467, 2737
BsnI	GGCC	9 cut(s)	66, 470, 1620, 1899, 2248, 3105, 3745, 3788, 3931
Bso31I	GGTCTC	3 cut(s)	2671, 2923, 3390
BsoBI	CYCGRG	3 cut(s)	471, 3446, 4005
Bsp1286I	GDGCHC	3 cut(s)	331, 2327, 2652
Bsp1720I	GCTNAGC	1 cut(s)	2418
BspANI	GGCC	9 cut(s)	66, 470, 1620, 1899, 2248, 3105, 3745, 3788, 3931
BspDI	ATCGAT	1 cut(s)	1005
BspFNI	CGCG	3 cut(s)	1734, 2618, 2801
BspHI	TCATGA	2 cut(s)	54, 2728
BspLI	GGNNCC	9 cut(s)	345, 1021, 1136, 1148, 2228, 2292, 2823, 3242, 3388
BspMAI	CTGCAG	1 cut(s)	3898
BspMI	ACCTGC	2 cut(s)	3426, 3766
BspOI	GCTAGC	1 cut(s)	3855
BspPI	GGATC	9 cut(s)	287, 338, 351, 720, 1204, 1343, 1419, 1859, 3650
BspQI	GCTCTTC	2 cut(s)	537, 1470
BspT107I	GGYRCC	2 cut(s)	1146, 2226
BspTNI	GGTCTC	3 cut(s)	2671, 2923, 3390
BsrDI	GCAATG	6 cut(s)	113, 1335, 2776, 2895, 3804, 3809
BsrFI	RCCGGY	5 cut(s)	109, 304, 2229, 2612, 3105
BsrI	ACTGG	3 cut(s)	340, 2034, 3496
BssAI	RCCGGY	5 cut(s)	109, 304, 2229, 2612, 3105
BssECI	CCNNGG	8 cut(s)	9, 119, 120, 471, 1860, 2013, 3196, 4159
BssHII	GCGCGC	1 cut(s)	2616
BssNAI	GTATAC	3 cut(s)	551, 1875, 2563
BssNI	GRCGYC	3 cut(s)	44, 308, 1393
BssSI	CACGAG	1 cut(s)	3468
BssT1I	CCWWGG	1 cut(s)	3196
Bst1107I	GTATAC	3 cut(s)	551, 1875, 2563
Bst2BI	CACGAG	1 cut(s)	3468
Bst2UI	CCWGG	6 cut(s)	121, 167, 2706, 3545, 3933, 4160
Bst4CI	ACNGT	5 cut(s)	745, 983, 1679, 2173, 3585
Bst6I	CTCTTC	7 cut(s)	525, 537, 1470, 1574, 1810, 2363, 2608
BstACI	GRCGYC	3 cut(s)	44, 308, 1393
BstAPI	GCANNNNNTGC	3 cut(s)	1247, 3484, 3737
BstC8I	GCNNGC	7 cut(s)	1187, 1252, 1374, 2201, 2618, 3225, 3853
BstENI	CCTNNNNNAGG	1 cut(s)	3936
BstF5I	GGATG	9 cut(s)	382, 901, 993, 1808, 1828, 2794, 3157, 3553, 4081
BstFNI	CGCG	3 cut(s)	1734, 2618, 2801
BstH2I	RGCGCY	3 cut(s)	1360, 1686, 3465
BstHHI	GCGC	5 cut(s)	1359, 1685, 2618, 2620, 3464
BstMCI	CGRYCG	2 cut(s)	1900, 3106
BstMWI	GCNNNNNNNGC	9 cut(s)	365, 1034, 1247, 3051, 3298, 3484, 3569, 3737, 3794
BstNI	CCWGG	6 cut(s)	121, 167, 2706, 3545, 3933, 4160
BstNSI	RCATGY	5 cut(s)	359, 427, 771, 2428, 3292
BstSFI	CTRYAG	2 cut(s)	3894, 4113
BstUI	CGCG	3 cut(s)	1734, 2618, 2801
BstV2I	GAAGAC	4 cut(s)	87, 485, 1303, 4017
BstX2I	RGATCY	5 cut(s)	343, 1196, 1348, 1411, 1851
BstXI	CCANNNNNNTGG	2 cut(s)	3407, 3432
BstYI	RGATCY	5 cut(s)	343, 1196, 1348, 1411, 1851
BstZ17I	GTATAC	3 cut(s)	551, 1875, 2563
BstZI	CGGCCG	2 cut(s)	1897, 3103
Bsu15I	ATCGAT	1 cut(s)	1005
Bsu36I	CCTNAGG	1 cut(s)	2319
BsuRI	GGCC	9 cut(s)	66, 470, 1620, 1899, 2248, 3105, 3745, 3788, 3931
BsuTUI	ATCGAT	1 cut(s)	1005
BtgZI	GCGATG	2 cut(s)	627, 3293
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	9 cut(s)	382, 901, 993, 1808, 1828, 2794, 3157, 3553, 4081
BtsI	GCAGTG	2 cut(s)	2625, 4104
BtsIMutI	CAGTG	8 cut(s)	784, 1324, 2027, 2169, 2482, 2625, 3323, 4104
BveI	ACCTGC	2 cut(s)	3426, 3766
Cac8I	GCNNGC	7 cut(s)	1187, 1252, 1374, 2201, 2618, 3225, 3853
CaiI	CAGNNNCTG	1 cut(s)	1368
CciI	TCATGA	2 cut(s)	54, 2728
CfoI	GCGC	5 cut(s)	1359, 1685, 2618, 2620, 3464
Cfr10I	RCCGGY	5 cut(s)	109, 304, 2229, 2612, 3105
Cfr13I	GGNCC	9 cut(s)	65, 469, 1135, 1729, 2246, 2702, 2822, 3108, 3386
Cfr9I	CCCGGG	1 cut(s)	471
ClaI	ATCGAT	1 cut(s)	1005
CpoI	CGGWCCG	1 cut(s)	1729
CseI	GACGC	2 cut(s)	297, 1967
CspAI	ACCGGT	1 cut(s)	2229
CspI	CGGWCCG	1 cut(s)	1729
DraI	TTTAAA	2 cut(s)	372, 1840
DraIII	CACNNNGTG	1 cut(s)	4091
DriI	GACNNNNNGTC	2 cut(s)	1750, 2275
EaeI	YGGCCR	3 cut(s)	1897, 3103, 3786
EagI	CGGCCG	2 cut(s)	1897, 3103
Eam1104I	CTCTTC	7 cut(s)	525, 537, 1470, 1574, 1810, 2363, 2608
Eam1105I	GACNNNNNGTC	2 cut(s)	1750, 2275
EarI	CTCTTC	7 cut(s)	525, 537, 1470, 1574, 1810, 2363, 2608
EciI	GGCGGA	1 cut(s)	1600
EclXI	CGGCCG	2 cut(s)	1897, 3103
Eco130I	CCWWGG	1 cut(s)	3196
Eco147I	AGGCCT	2 cut(s)	3745, 3931
Eco24I	GRGCYC	1 cut(s)	2327
Eco31I	GGTCTC	3 cut(s)	2671, 2923, 3390
Eco47I	GGWCC	6 cut(s)	1135, 1729, 2702, 2822, 3108, 3386
Eco47III	AGCGCT	1 cut(s)	1358
Eco52I	CGGCCG	2 cut(s)	1897, 3103
Eco57I	CTGAAG	8 cut(s)	456, 518, 1345, 1570, 1761, 2387, 3652, 3896
Eco81I	CCTNAGG	1 cut(s)	2319
Eco88I	CYCGRG	3 cut(s)	471, 3446, 4005
EcoNI	CCTNNNNNAGG	1 cut(s)	3936
EcoRI	GAATTC	2 cut(s)	2398, 2830
EcoRII	CCWGG	6 cut(s)	119, 165, 2704, 3543, 3931, 4158
EcoT14I	CCWWGG	1 cut(s)	3196
EcoT22I	ATGCAT	2 cut(s)	1424, 2314
EcoT38I	GRGCYC	1 cut(s)	2327
ErhI	CCWWGG	1 cut(s)	3196
FalI	AAGNNNNNCTT	6 cut(s)	2031, 2063, 2087, 2119, 3180, 3212
FaqI	GGGAC	4 cut(s)	137, 1148, 1467, 2737
FauI	CCCGC	2 cut(s)	1194, 2851
FbaI	TGATCA	1 cut(s)	2502
FblI	GTMKAC	4 cut(s)	41, 550, 1874, 2562
FokI	GGATG	9 cut(s)	389, 908, 1000, 1795, 1835, 2801, 3164, 3560, 4088
FriOI	GRGCYC	1 cut(s)	2327
FspBI	CTAG	6 cut(s)	762, 1200, 2997, 3030, 3362, 3852
GlaI	GCGC	5 cut(s)	1358, 1684, 2617, 2619, 3463
GsuI	CTGGAG	1 cut(s)	473
HaeII	RGCGCY	3 cut(s)	1360, 1686, 3465
HaeIII	GGCC	9 cut(s)	66, 470, 1620, 1899, 2248, 3105, 3745, 3788, 3931
HgaI	GACGC	2 cut(s)	297, 1967
HhaI	GCGC	5 cut(s)	1359, 1685, 2618, 2620, 3464
Hin1I	GRCGYC	3 cut(s)	44, 308, 1393
Hin6I	GCGC	5 cut(s)	1357, 1683, 2616, 2618, 3462
HinP1I	GCGC	5 cut(s)	1357, 1683, 2616, 2618, 3462
HincII	GTYRAC	3 cut(s)	42, 502, 3838
HindII	GTYRAC	3 cut(s)	42, 502, 3838
HindIII	AAGCTT	1 cut(s)	2782
HphI	GGTGA	7 cut(s)	970, 1570, 2250, 2602, 2839, 3175, 3790
HpyCH4III	ACNGT	5 cut(s)	745, 983, 1679, 2173, 3585
HpyCH4IV	ACGT	5 cut(s)	44, 75, 629, 1393, 2334
HpyF10VI	GCNNNNNNNGC	9 cut(s)	365, 1034, 1247, 3051, 3298, 3484, 3569, 3737, 3794
HpySE526I	ACGT	5 cut(s)	44, 75, 629, 1393, 2334
Hsp92I	GRCGYC	3 cut(s)	44, 308, 1393
HspAI	GCGC	5 cut(s)	1357, 1683, 2616, 2618, 3462
KpnI	GGTACC	2 cut(s)	1150, 2230
Ksp22I	TGATCA	1 cut(s)	2502
LguI	GCTCTTC	2 cut(s)	537, 1470
LmnI	GCTCC	6 cut(s)	1690, 1707, 2290, 2350, 3601, 3860
LweI	GCATC	6 cut(s)	867, 1323, 1526, 1813, 2368, 3991
MaeI	CTAG	6 cut(s)	762, 1200, 2997, 3030, 3362, 3852
MaeII	ACGT	5 cut(s)	44, 75, 629, 1393, 2334
MflI	RGATCY	5 cut(s)	343, 1196, 1348, 1411, 1851
MhlI	GDGCHC	3 cut(s)	331, 2327, 2652
MlyI	GAGTC	5 cut(s)	1778, 2138, 2153, 2719, 4033
MmeI	TCCRAC	6 cut(s)	965, 1980, 2110, 2447, 3186, 3585
Mph1103I	ATGCAT	2 cut(s)	1424, 2314
MroXI	GAANNNNTTC	2 cut(s)	406, 1068
MslI	CAYNNNNRTG	6 cut(s)	2030, 3405, 3430, 3492, 3519, 3629
MspA1I	CMGCKG	3 cut(s)	1781, 2663, 4124
MvaI	CCWGG	6 cut(s)	121, 167, 2706, 3545, 3933, 4160
MvnI	CGCG	3 cut(s)	1734, 2618, 2801
MwoI	GCNNNNNNNGC	9 cut(s)	365, 1034, 1247, 3051, 3298, 3484, 3569, 3737, 3794
NciI	CCSGG	4 cut(s)	472, 473, 1896, 2722
NheI	GCTAGC	1 cut(s)	3851
NlaIV	GGNNCC	9 cut(s)	345, 1021, 1136, 1148, 2228, 2292, 2823, 3242, 3388
NmeAIII	GCCGAG	1 cut(s)	3814
NmuCI	GTSAC	6 cut(s)	236, 658, 781, 1504, 2881, 4117
NsiI	ATGCAT	2 cut(s)	1424, 2314
NspI	RCATGY	5 cut(s)	359, 427, 771, 2428, 3292
OliI	CACNNNNGTG	2 cut(s)	2030, 3629
PaeR7I	CTCGAG	2 cut(s)	3446, 4005
PagI	TCATGA	2 cut(s)	54, 2728
PaqCI	CACCTGC	1 cut(s)	3766
PasI	CCCWGGG	1 cut(s)	120
PauI	GCGCGC	1 cut(s)	2616
PceI	AGGCCT	2 cut(s)	3745, 3931
PciI	ACATGT	2 cut(s)	423, 767
PciSI	GCTCTTC	2 cut(s)	537, 1470
PcsI	WCGNNNNNNNCGW	5 cut(s)	29, 35, 38, 181, 1123
PdmI	GAANNNNTTC	2 cut(s)	406, 1068
PfeI	GAWTC	8 cut(s)	1007, 1736, 1865, 1909, 2070, 2432, 3333, 4109
PfoI	TCCNGGA	2 cut(s)	2720, 3543
PinAI	ACCGGT	1 cut(s)	2229
PleI	GAGTC	5 cut(s)	1778, 2138, 2153, 2719, 4032
PpsI	GAGTC	5 cut(s)	1778, 2138, 2153, 2719, 4032
PscI	ACATGT	2 cut(s)	423, 767
PshBI	ATTAAT	2 cut(s)	2568, 3264
Psp6I	CCWGG	6 cut(s)	119, 165, 2704, 3543, 3931, 4158
PspGI	CCWGG	6 cut(s)	119, 165, 2704, 3543, 3931, 4158
PspN4I	GGNNCC	9 cut(s)	345, 1021, 1136, 1148, 2228, 2292, 2823, 3242, 3388
PspPI	GGNCC	9 cut(s)	65, 469, 1135, 1729, 2246, 2702, 2822, 3108, 3386
PspXI	VCTCGAGB	1 cut(s)	3446
PstI	CTGCAG	1 cut(s)	3898
PstNI	CAGNNNCTG	1 cut(s)	1368
PsuI	RGATCY	5 cut(s)	343, 1196, 1348, 1411, 1851
PteI	GCGCGC	1 cut(s)	2616
PvuII	CAGCTG	2 cut(s)	1781, 4124
RseI	CAYNNNNRTG	6 cut(s)	2030, 3405, 3430, 3492, 3519, 3629
Rsr2I	CGGWCCG	1 cut(s)	1729
RsrII	CGGWCCG	1 cut(s)	1729
SalI	GTCGAC	1 cut(s)	40
SapI	GCTCTTC	2 cut(s)	537, 1470
Sau96I	GGNCC	9 cut(s)	65, 469, 1135, 1729, 2246, 2702, 2822, 3108, 3386
ScaI	AGTACT	1 cut(s)	3665
SchI	GAGTC	5 cut(s)	1778, 2138, 2153, 2719, 4033
SduI	GDGCHC	3 cut(s)	331, 2327, 2652
SfaNI	GCATC	6 cut(s)	867, 1323, 1526, 1813, 2368, 3991
SfcI	CTRYAG	2 cut(s)	3894, 4113
Sfr274I	CTCGAG	2 cut(s)	3446, 4005
SgrAI	CRCCGGYG	1 cut(s)	2612
SgrDI	CGTCGACG	1 cut(s)	40
SinI	GGWCC	6 cut(s)	1135, 1729, 2702, 2822, 3108, 3386
SlaI	CTCGAG	2 cut(s)	3446, 4005
SmaI	CCCGGG	1 cut(s)	473
SmiMI	CAYNNNNRTG	6 cut(s)	2030, 3405, 3430, 3492, 3519, 3629
SmlI	CTYRAG	5 cut(s)	211, 1304, 2934, 3446, 4005
SmoI	CTYRAG	5 cut(s)	211, 1304, 2934, 3446, 4005
SpeI	ACTAGT	1 cut(s)	3361
SseBI	AGGCCT	2 cut(s)	3745, 3931
SspMI	CTAG	6 cut(s)	762, 1200, 2997, 3030, 3362, 3852
StuI	AGGCCT	2 cut(s)	3745, 3931
StyI	CCWWGG	1 cut(s)	3196
TaaI	ACNGT	5 cut(s)	745, 983, 1679, 2173, 3585
TaiI	ACGT	5 cut(s)	47, 78, 632, 1396, 2337
TaqII	GACCGA	2 cut(s)	74, 2392
TatI	WGTACW	5 cut(s)	2550, 2814, 3023, 3372, 3663
TauI	GCSGC	1 cut(s)	1902
TfiI	GAWTC	8 cut(s)	1007, 1736, 1865, 1909, 2070, 2432, 3333, 4109
TscAI	CASTG	8 cut(s)	784, 1324, 2034, 2176, 2482, 2632, 3330, 4104
TseFI	GTSAC	6 cut(s)	236, 658, 781, 1504, 2881, 4117
Tsp45I	GTSAC	6 cut(s)	236, 658, 781, 1504, 2881, 4117
TspGWI	ACGGA	2 cut(s)	346, 1801
TspMI	CCCGGG	1 cut(s)	471
TspRI	CASTG	8 cut(s)	784, 1324, 2034, 2176, 2482, 2632, 3330, 4104
VpaK11BI	GGWCC	6 cut(s)	1135, 1729, 2702, 2822, 3108, 3386
VspI	ATTAAT	2 cut(s)	2568, 3264
XagI	CCTNNNNNAGG	1 cut(s)	3936
XapI	RAATTY	8 cut(s)	287, 538, 821, 1627, 2398, 2452, 2830, 3553
XbaI	TCTAGA	2 cut(s)	1199, 3029
XceI	RCATGY	5 cut(s)	359, 427, 771, 2428, 3292
XhoI	CTCGAG	2 cut(s)	3446, 4005
XmaI	CCCGGG	1 cut(s)	471
XmiI	GTMKAC	4 cut(s)	41, 550, 1874, 2562
XmnI	GAANNNNTTC	2 cut(s)	406, 1068
XspI	CTAG	6 cut(s)	762, 1200, 2997, 3030, 3362, 3852
ZraI	GACGTC	2 cut(s)	45, 1394
ZrmI	AGTACT	1 cut(s)	3665
Zsp2I	ATGCAT	2 cut(s)	1424, 2314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.