Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3675792 .. 3678467

Gene Structure 2676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG047800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

ATGGGGAGAGTGACAAATGGTGCATCATCAAATGTTCCTCCACAACTCTCCCCCCTCCCCTTTCTTTTCCTTCTCTTCCTTTTCACCTTCTTCAGCAATCTCATAAACAATGTCTCCGCCAAAGGCCATGCAAATTCTTCGGCTACATTGACATTCACGCCTTCTGATAACTTCCTCATCGACTGTGGCGCTCCGCAAGAAGCCAAGCTCCCTGATGGCAGGACATTCAAATCGGACCGCGAATCGGCTGACCTCTTGTCCACAAATGAGGACTTTAAGGCTTCAGCTGACTCCATCAATGCCAATGTCTCTTCATCTGTTCCACCGGATGCAATAGTTCTATTTAAAACGGCGAGGATCTTCTCCGAGGAATCCATGTATACATTCCACATCAACAAGCCCGGCCGCCATTGGATTCGCCTATACTTCTATCCTCTCCCACACCAGACATACAACCTTTCCGACGCAGTTTTCTCGGTGGACACAGACAAGTATGTTCTCTTGCATGACTTTTCTGCCTCGGACAAAGCCACACTGGTGTTCAAAGAATACCTTTTCAATGTCTCTGACAACAGATTCTCTCTCCATTTCCGACCAAAGAAGCACTCCTTTGCTTTTGTCAATGCCATTGAGGTTGTCTCTGCCCCAGACTCTATTTTCAATGACTCTGCCACCACTGTTCCCGTAGCCGGAGACTTCAACGGCTTGCAAAACTACGCTTTCCAAGTCCGGTACCGGCTAAATGTGGGAGGGCCATTGGTATCACCTCAAAATGACACATTGTCAAGGACTTGGGAGCCAGACACTCCATACAATGCATTTCCTCAGGGCTCTCAAAACGTGTCAGTTGCTCCGAAAATCGTCAAGTATCTGAAGAGAGGAGATGCCTCCTTGATTGCCCCGAATTCGGTCTATGCAACTGCTCAGCACATGCAGGATTCTTTCACAAGCAACCAGAATTTCAACCTCAGTTGGAAGCTTAGTGTTGAGGAGGACTTTTCCTACTTGATCAGGTTACATTTCTGCGACATTGTGAGCAAGACCCTTGATAACTTGTACTTCAATGTATACATTAATGGCATGATGGCTGTCTCCAATCTTGATCTCTCTTCACTCACCGGCGCGCTATCCACTGCTTTTTACAAAGATTTCGTGCTCAATTCCACAGCGGTCTCCACCTCAAATAACACCATCAACATTCAGATTGGTCCTGGCACTACTCAGTCCGGGACTCATGATGGACTGCTTAATGGAGTGGAGGTCTTGAAATTGAGCAATGAAGCAGAAAGCTTGGATGGATTTTTCGCGGTTGATGGGAAGTACAAGGGTCCGGTGAATTCATCAAACAAAATGAAGATAGTTGCGGGTGTGGGATTGGGAATGGGAGTGACGGCAATGTTCTTAGTTGGCGTGGTTTATATAAGGTGGAAAAGGAGACCTCAAGGTTGGGAAAAGAAAGATAGCTTCTCATCATGGTTGCTTCCTATACATTCCGGTAACTCTAGCTTGTTCTCCAAGTCAAGTAAGTGTACTTCTAGAAGATCAAGCAGCATTTTCGGCTCACGCAAGAGCAAGAGTTACTCAACTTATGTTTCTTCCACTTGCTACGGCCGGTCCTTCACTTTCGCTGAGTTACAAGCTGCAACTCAAAATTGGGATGAGAAGGAGGTGATCGGTGTTGGGGGGTTCGGGAAAGTGTACCTTGGGGTGTTGGAAGATGGTACTAAGCTGGCTATCAAACGAGGGAACCCGAACTCTGAGCAAGGTATTAATGAGTTCAGAACAGAAATGGACATGCTCTCCAAGCTAAGACATCGCCACCTTGTTTCACTGATTGGATTCTGTGATGAGAATAATGAGATGATACTAGTGTATGAGTACATGGCTAATGGACCCCTTCGAGACCACCTCTATGGCTCGAACCTGCTTCCATTGTCATGGAAGCAAAGGCTCGAGGTTTGCATTGGCGCTGCTCGTGGTTTGCATTATCTGCATACTGGTGCAGCACAAGGCATTATCCATCGTGATGTCAAGACGACGAATATCCTCCTGGATGAGAATTTCGTTGCAAAAGTAGCTGACTTTGGACTGTCAAAAGCTGCTCCATCGTTGGAACAAACCCATGTCAGCACAGCCGTGAAGGGAAGTTTTGGTTATCTTGATCCTGAGTACTTCAGGAGGCAGCAGCTTACTGAGAAATCCGATGTGTATTCTTTCGGCGTGGTTCTTTTTGAGGCATTATGTGCAAGGCCTGTTATATGCCCCACTCTACCAAGAGAGCAGGTGAGTTTGGCAGAGTGGGCAATGCAATGGCACAGGAAGGGCATGATTGAGAAGATTGTTGACCCTCAAATCGCTAGCTCCATCAACGCTGGTTCGCTGAAGAAGTATGTAGAAGCTGCAGAGAAATGCCTTGCGGAGTATGGTGTGGATAGGCCTGGCATAGGAGATGTGTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGACAGCCTCGCAGATTGATGCTCGAGAAGACAATACTTCGAGTCTCATTTCTTTGGATAAAGCAAGTGAGAAAGATGACACAAACTCAAAGGATGGCTCTGCACTTGGTGGTGCAGTGAGCGAGGATTCTGTAGTCACAGCTGGTGGTTCTCCTCTGTTTGATAAAGGGAATGTCCAGGGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009705 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032879 GO:0036211 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0051049 GO:0051924 GO:0055082 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097272 GO:0097275 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Malectin_like Pkinase_Tyr zf-C3HC4_2

Protein Analysis

891

Amino Acids

98.26

Weight (kDa)

6.28

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	59 - 198	7.9e-06	Malectin domain
Malectin_like	PF12819	60 - 423	1.8e-30	Malectin-like domain
Malectin	PF11721	246 - 392	1.4e-09	Malectin domain
Pkinase	PF00069	553 - 756	9.8e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	555 - 749	1.4e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61350
fragaria_vesca	FvH4_5g14520
malus_domestica	MD14G1205200.v1.1
prunus_persica	Prupe.5G198600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182131
rosa_laevigata	RLG00000005148
rosa_multiflora	Rmu_co8484825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271480
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh7AG048600 Rh7BG048400 Rh7CG049900 Rh7DG047800
rosa_wichuraiana	Rw7G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2272
Acc36I	ACCTGC	2 cut(s)	1932, 2272
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AccI	GTMKAC	2 cut(s)	380, 1068
AccII	CGCG	3 cut(s)	240, 1124, 1307
AciI	CCGC	8 cut(s)	117, 194, 238, 406, 1169, 1307, 1364, 2417
AclWI	GGATC	2 cut(s)	365, 2156
AcoI	YGGCCR	2 cut(s)	403, 1609
AcsI	RAATTY	5 cut(s)	133, 904, 958, 1336, 2059
AcuI	CTGAAG	5 cut(s)	76, 267, 893, 2158, 2402
AdeI	CACNNNGTG	1 cut(s)	2597
AfaI	GTAC	8 cut(s)	734, 1058, 1322, 1531, 1700, 1723, 1880, 2171
AfiI	CCNNNNNNNGG	4 cut(s)	244, 689, 907, 2444
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	9 cut(s)	229, 544, 559, 661, 700, 964, 1063, 1267, 2486
AhdI	GACNNNNNGTC	2 cut(s)	256, 781
AhlI	ACTAGT	1 cut(s)	1867
AjnI	CCWGG	4 cut(s)	1210, 2049, 2437, 2664
AleI	CACNNNNGTG	2 cut(s)	536, 2135
Alw21I	GWGCWC	1 cut(s)	1158
AlwI	GGATC	2 cut(s)	365, 2156
Ama87I	CYCGRG	2 cut(s)	1952, 2511
AoxI	GGCC	6 cut(s)	124, 403, 752, 1609, 2249, 2435
ApeKI	GCWGC	9 cut(s)	1548, 1640, 1970, 2003, 2099, 2182, 2185, 2399, 2479
ApoI	RAATTY	5 cut(s)	133, 904, 958, 1336, 2059
AseI	ATTAAT	2 cut(s)	1074, 1770
Asp718I	GGTACC	1 cut(s)	732
AspLEI	GCGC	4 cut(s)	191, 1124, 1126, 1970
AspS9I	GGNCC	6 cut(s)	235, 752, 1208, 1328, 1614, 1892
AsuC2I	CCSGG	2 cut(s)	402, 1228
AsuHPI	GGTGA	6 cut(s)	76, 756, 1108, 1345, 1681, 2296
AsuNHI	GCTAGC	1 cut(s)	2357
AvaI	CYCGRG	2 cut(s)	1952, 2511
AvaII	GGWCC	5 cut(s)	235, 1208, 1328, 1614, 1892
AxyI	CCTNAGG	1 cut(s)	825
BaeI	ACNNNNGTAYC	2 cut(s)	1856, 1889
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	833
BarI	GAAGNNNNNNTAC	2 cut(s)	1516, 1548
BauI	CACGAG	1 cut(s)	1974
BbsI	GAAGAC	1 cut(s)	2523
Bbv12I	GWGCWC	1 cut(s)	1158
BbvI	GCAGC	9 cut(s)	1560, 1627, 1957, 2015, 2086, 2194, 2197, 2386, 2491
BceAI	ACGGC	5 cut(s)	366, 718, 1407, 1624, 2120
BcgI	CGANNNNNNTGC	6 cut(s)	120, 154, 456, 490, 1537, 1571
BciT130I	CCWGG	4 cut(s)	1212, 2051, 2439, 2666
BclI	TGATCA	1 cut(s)	1008
BcnI	CCSGG	2 cut(s)	402, 1228
BcuI	ACTAGT	1 cut(s)	1867
BfaI	CTAG	4 cut(s)	1503, 1536, 1868, 2358
BfmI	CTRYAG	2 cut(s)	2400, 2619
BfoI	RGCGCY	2 cut(s)	192, 1971
BfuAI	ACCTGC	2 cut(s)	1932, 2272
BlpI	GCTNAGC	1 cut(s)	924
BmcAI	AGTACT	1 cut(s)	2171
Bme1390I	CCNGG	6 cut(s)	402, 1212, 1228, 2051, 2439, 2666
Bme18I	GGWCC	5 cut(s)	235, 1208, 1328, 1614, 1892
BmeRI	GACNNNNNGTC	2 cut(s)	256, 781
BmeT110I	CYCGRG	2 cut(s)	1952, 2511
BmgT120I	GGNCC	6 cut(s)	235, 752, 1208, 1328, 1614, 1892
BmiI	GGNNCC	5 cut(s)	734, 798, 1329, 1748, 1894
BmrFI	CCNGG	6 cut(s)	402, 1212, 1228, 2051, 2439, 2666
BmsI	GCATC	4 cut(s)	32, 319, 874, 2497
BmtI	GCTAGC	1 cut(s)	2361
BpiI	GAAGAC	1 cut(s)	2523
BplI	GAGNNNNNCTC	6 cut(s)	623, 655, 1893, 1925, 2480, 2512
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	1425
BpuMI	CCSGG	2 cut(s)	402, 1228
BsaI	GGTCTC	3 cut(s)	1177, 1429, 1896
BsaJI	CCNNGG	4 cut(s)	366, 519, 1702, 2665
BsaWI	WCCGGW	4 cut(s)	325, 729, 1330, 1493
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 1245, 1275, 1784, 1814
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 689, 907, 2444
Bse118I	RCCGGY	3 cut(s)	735, 1118, 1611
Bse1I	ACTGG	2 cut(s)	540, 2002
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	4 cut(s)	1282, 1401, 2310, 2315
BseBI	CCWGG	4 cut(s)	1212, 2051, 2439, 2666
BseDI	CCNNGG	4 cut(s)	366, 519, 1702, 2665
BseGI	GGATG	5 cut(s)	334, 1300, 1663, 2059, 2587
BseLI	CCNNNNNNNGG	4 cut(s)	244, 689, 907, 2444
BseMI	GCAATG	4 cut(s)	1282, 1401, 2310, 2315
BseMII	CTCAG	8 cut(s)	839, 938, 982, 1235, 1620, 1749, 2157, 2184
BseNI	ACTGG	2 cut(s)	540, 2002
BsePI	GCGCGC	1 cut(s)	1122
BseRI	GAGGAG	3 cut(s)	894, 1004, 2631
BseX3I	CGGCCG	2 cut(s)	403, 1609
BseXI	GCAGC	9 cut(s)	1560, 1627, 1957, 2015, 2086, 2194, 2197, 2386, 2491
BsgI	GTGCAG	3 cut(s)	2022, 2574, 2622
Bsh1236I	CGCG	3 cut(s)	240, 1124, 1307
Bsh1285I	CGRYCG	2 cut(s)	406, 1612
BshFI	GGCC	6 cut(s)	126, 405, 754, 1611, 2251, 2437
BshNI	GGYRCC	1 cut(s)	732
BsiEI	CGRYCG	2 cut(s)	406, 1612
BsiHKAI	GWGCWC	1 cut(s)	1158
BsiHKCI	CYCGRG	2 cut(s)	1952, 2511
BslFI	GGGAC	1 cut(s)	1243
BslI	CCNNNNNNNGG	4 cut(s)	244, 689, 907, 2444
BsmFI	GGGAC	1 cut(s)	1243
BsnI	GGCC	6 cut(s)	126, 405, 754, 1611, 2251, 2437
Bso31I	GGTCTC	3 cut(s)	1177, 1429, 1896
BsoBI	CYCGRG	2 cut(s)	1952, 2511
Bsp1286I	GDGCHC	2 cut(s)	833, 1158
Bsp143I	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
Bsp1720I	GCTNAGC	1 cut(s)	924
BspACI	CCGC	8 cut(s)	117, 194, 238, 406, 1169, 1307, 1364, 2417
BspANI	GGCC	6 cut(s)	126, 405, 754, 1611, 2251, 2437
BspCNI	CTCAG	8 cut(s)	838, 937, 981, 1234, 1621, 1750, 2158, 2185
BspFNI	CGCG	3 cut(s)	240, 1124, 1307
BspHI	TCATGA	1 cut(s)	1234
BspLI	GGNNCC	5 cut(s)	734, 798, 1329, 1748, 1894
BspMAI	CTGCAG	1 cut(s)	2404
BspMI	ACCTGC	2 cut(s)	1932, 2272
BspOI	GCTAGC	1 cut(s)	2361
BspPI	GGATC	2 cut(s)	365, 2156
BspT107I	GGYRCC	1 cut(s)	732
BspTNI	GGTCTC	3 cut(s)	1177, 1429, 1896
BsrDI	GCAATG	4 cut(s)	1282, 1401, 2310, 2315
BsrFI	RCCGGY	3 cut(s)	735, 1118, 1611
BsrI	ACTGG	2 cut(s)	540, 2002
BssAI	RCCGGY	3 cut(s)	735, 1118, 1611
BssECI	CCNNGG	4 cut(s)	366, 519, 1702, 2665
BssHII	GCGCGC	1 cut(s)	1122
BssMI	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
BssNAI	GTATAC	2 cut(s)	381, 1069
BssSI	CACGAG	1 cut(s)	1974
BssT1I	CCWWGG	1 cut(s)	1702
Bst1107I	GTATAC	2 cut(s)	381, 1069
Bst2BI	CACGAG	1 cut(s)	1974
Bst2UI	CCWGG	4 cut(s)	1212, 2051, 2439, 2666
Bst4CI	ACNGT	3 cut(s)	185, 679, 2091
Bst6I	CTCTTC	4 cut(s)	80, 316, 869, 1114
BstAPI	GCANNNNNTGC	2 cut(s)	1990, 2243
BstC8I	GCNNGC	4 cut(s)	707, 1124, 1731, 2359
BstENI	CCTNNNNNAGG	1 cut(s)	2442
BstF5I	GGATG	5 cut(s)	334, 1300, 1663, 2059, 2587
BstFNI	CGCG	3 cut(s)	240, 1124, 1307
BstH2I	RGCGCY	2 cut(s)	192, 1971
BstHHI	GCGC	4 cut(s)	191, 1124, 1126, 1970
BstKTI	GATC	6 cut(s)	360, 1011, 1105, 1544, 1674, 2164
BstMBI	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
BstMCI	CGRYCG	2 cut(s)	406, 1612
BstMWI	GCNNNNNNNGC	6 cut(s)	1557, 1804, 1990, 2075, 2243, 2300
BstNI	CCWGG	4 cut(s)	1212, 2051, 2439, 2666
BstNSI	RCATGY	2 cut(s)	934, 1798
BstSCI	CCNGG	6 cut(s)	400, 1210, 1226, 2049, 2437, 2664
BstSFI	CTRYAG	2 cut(s)	2400, 2619
BstUI	CGCG	3 cut(s)	240, 1124, 1307
BstV1I	GCAGC	9 cut(s)	1560, 1627, 1957, 2015, 2086, 2194, 2197, 2386, 2491
BstV2I	GAAGAC	1 cut(s)	2523
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	2 cut(s)	1913, 1938
BstYI	RGATCY	1 cut(s)	357
BstZ17I	GTATAC	2 cut(s)	381, 1069
BstZI	CGGCCG	2 cut(s)	403, 1609
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	6 cut(s)	126, 405, 754, 1611, 2251, 2437
BtgZI	GCGATG	1 cut(s)	1799
BtsCI	GGATG	5 cut(s)	334, 1300, 1663, 2059, 2587
BtsI	GCAGTG	2 cut(s)	1131, 2610
BtsIMutI	CAGTG	5 cut(s)	533, 675, 1131, 1829, 2610
BveI	ACCTGC	2 cut(s)	1932, 2272
Cac8I	GCNNGC	4 cut(s)	707, 1124, 1731, 2359
CciI	TCATGA	1 cut(s)	1234
CfoI	GCGC	4 cut(s)	191, 1124, 1126, 1970
Cfr10I	RCCGGY	3 cut(s)	735, 1118, 1611
Cfr13I	GGNCC	6 cut(s)	235, 752, 1208, 1328, 1614, 1892
CpoI	CGGWCCG	1 cut(s)	235
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	8 cut(s)	733, 1057, 1321, 1530, 1699, 1722, 1879, 2170
CspI	CGGWCCG	1 cut(s)	235
CviQI	GTAC	8 cut(s)	733, 1057, 1321, 1530, 1699, 1722, 1879, 2170
DpnI	GATC	6 cut(s)	359, 1010, 1104, 1543, 1673, 2163
DpnII	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
DraI	TTTAAA	1 cut(s)	346
DraIII	CACNNNGTG	1 cut(s)	2597
DriI	GACNNNNNGTC	2 cut(s)	256, 781
EaeI	YGGCCR	2 cut(s)	403, 1609
EagI	CGGCCG	2 cut(s)	403, 1609
Eam1104I	CTCTTC	4 cut(s)	80, 316, 869, 1114
Eam1105I	GACNNNNNGTC	2 cut(s)	256, 781
EarI	CTCTTC	4 cut(s)	80, 316, 869, 1114
EciI	GGCGGA	1 cut(s)	106
EclXI	CGGCCG	2 cut(s)	403, 1609
Eco130I	CCWWGG	1 cut(s)	1702
Eco147I	AGGCCT	2 cut(s)	2251, 2437
Eco24I	GRGCYC	1 cut(s)	833
Eco31I	GGTCTC	3 cut(s)	1177, 1429, 1896
Eco47I	GGWCC	5 cut(s)	235, 1208, 1328, 1614, 1892
Eco52I	CGGCCG	2 cut(s)	403, 1609
Eco57I	CTGAAG	5 cut(s)	76, 267, 893, 2158, 2402
Eco81I	CCTNAGG	1 cut(s)	825
Eco88I	CYCGRG	2 cut(s)	1952, 2511
EcoNI	CCTNNNNNAGG	1 cut(s)	2442
EcoRI	GAATTC	2 cut(s)	904, 1336
EcoRII	CCWGG	4 cut(s)	1210, 2049, 2437, 2664
EcoT14I	CCWWGG	1 cut(s)	1702
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	833
ErhI	CCWWGG	1 cut(s)	1702
FalI	AAGNNNNNCTT	6 cut(s)	537, 569, 593, 625, 1686, 1718
FaqI	GGGAC	1 cut(s)	1243
FauI	CCCGC	1 cut(s)	1357
FbaI	TGATCA	1 cut(s)	1008
FblI	GTMKAC	2 cut(s)	380, 1068
FokI	GGATG	5 cut(s)	341, 1307, 1670, 2066, 2594
FriOI	GRGCYC	1 cut(s)	833
FspBI	CTAG	4 cut(s)	1503, 1536, 1868, 2358
GlaI	GCGC	4 cut(s)	190, 1123, 1125, 1969
HaeII	RGCGCY	2 cut(s)	192, 1971
HaeIII	GGCC	6 cut(s)	126, 405, 754, 1611, 2251, 2437
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	4 cut(s)	191, 1124, 1126, 1970
Hin6I	GCGC	4 cut(s)	189, 1122, 1124, 1968
HinP1I	GCGC	4 cut(s)	189, 1122, 1124, 1968
HincII	GTYRAC	1 cut(s)	2344
HindII	GTYRAC	1 cut(s)	2344
HindIII	AAGCTT	2 cut(s)	977, 1288
HphI	GGTGA	6 cut(s)	76, 756, 1108, 1345, 1681, 2296
Hpy166II	GTNNAC	7 cut(s)	261, 381, 481, 1069, 1530, 1699, 2344
Hpy8I	GTNNAC	7 cut(s)	261, 381, 481, 1069, 1530, 1699, 2344
Hpy99I	CGWCG	2 cut(s)	467, 2041
HpyAV	CCTTC	8 cut(s)	80, 97, 171, 1627, 1657, 1907, 2134, 2314
HpyCH4III	ACNGT	3 cut(s)	185, 679, 2091
HpyCH4IV	ACGT	1 cut(s)	840
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1557, 1804, 1990, 2075, 2243, 2300
HpySE526I	ACGT	1 cut(s)	840
HspAI	GCGC	4 cut(s)	189, 1122, 1124, 1968
KpnI	GGTACC	1 cut(s)	736
Ksp22I	TGATCA	1 cut(s)	1008
Kzo9I	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
LmnI	GCTCC	6 cut(s)	196, 213, 796, 856, 2107, 2366
Lsp1109I	GCAGC	9 cut(s)	1560, 1627, 1957, 2015, 2086, 2194, 2197, 2386, 2491
LweI	GCATC	4 cut(s)	32, 319, 874, 2497
MaeI	CTAG	4 cut(s)	1503, 1536, 1868, 2358
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	7 cut(s)	10, 1014, 1387, 1496, 1577, 1632, 2623
MalI	GATC	6 cut(s)	359, 1010, 1104, 1543, 1673, 2163
MboI	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	833, 1158
MluCI	AATT	8 cut(s)	133, 904, 958, 1159, 1268, 1336, 1651, 2059
MlyI	GAGTC	5 cut(s)	284, 644, 659, 1225, 2539
MmeI	TCCRAC	5 cut(s)	486, 616, 953, 1692, 2091
Mph1103I	ATGCAT	1 cut(s)	820
MseI	TTAA	5 cut(s)	276, 345, 1074, 1248, 1770
MslI	CAYNNNNRTG	6 cut(s)	536, 1911, 1936, 1998, 2025, 2135
MspA1I	CMGCKG	3 cut(s)	287, 1169, 2630
MspR9I	CCNGG	6 cut(s)	402, 1212, 1228, 2051, 2439, 2666
MvaI	CCWGG	4 cut(s)	1212, 2051, 2439, 2666
MvnI	CGCG	3 cut(s)	240, 1124, 1307
MwoI	GCNNNNNNNGC	6 cut(s)	1557, 1804, 1990, 2075, 2243, 2300
NciI	CCSGG	2 cut(s)	402, 1228
NdeII	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
NheI	GCTAGC	1 cut(s)	2357
NlaIV	GGNNCC	5 cut(s)	734, 798, 1329, 1748, 1894
NmuCI	GTSAC	3 cut(s)	10, 1387, 2623
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	2 cut(s)	934, 1798
OliI	CACNNNNGTG	2 cut(s)	536, 2135
PaeR7I	CTCGAG	2 cut(s)	1952, 2511
PagI	TCATGA	1 cut(s)	1234
PaqCI	CACCTGC	1 cut(s)	2272
PauI	GCGCGC	1 cut(s)	1122
PceI	AGGCCT	2 cut(s)	2251, 2437
PfeI	GAWTC	7 cut(s)	242, 371, 415, 576, 938, 1839, 2615
PfoI	TCCNGGA	2 cut(s)	1226, 2049
PleI	GAGTC	5 cut(s)	284, 644, 659, 1225, 2538
PpsI	GAGTC	5 cut(s)	284, 644, 659, 1225, 2538
PshBI	ATTAAT	2 cut(s)	1074, 1770
Psp6I	CCWGG	4 cut(s)	1210, 2049, 2437, 2664
PspGI	CCWGG	4 cut(s)	1210, 2049, 2437, 2664
PspN4I	GGNNCC	5 cut(s)	734, 798, 1329, 1748, 1894
PspPI	GGNCC	6 cut(s)	235, 752, 1208, 1328, 1614, 1892
PspXI	VCTCGAGB	1 cut(s)	1952
PstI	CTGCAG	1 cut(s)	2404
PsuI	RGATCY	1 cut(s)	357
PteI	GCGCGC	1 cut(s)	1122
PvuII	CAGCTG	2 cut(s)	287, 2630
RsaI	GTAC	8 cut(s)	734, 1058, 1322, 1531, 1700, 1723, 1880, 2171
RsaNI	GTAC	8 cut(s)	733, 1057, 1321, 1530, 1699, 1722, 1879, 2170
RseI	CAYNNNNRTG	6 cut(s)	536, 1911, 1936, 1998, 2025, 2135
Rsr2I	CGGWCCG	1 cut(s)	235
RsrII	CGGWCCG	1 cut(s)	235
SaqAI	TTAA	5 cut(s)	276, 345, 1074, 1248, 1770
Sau3AI	GATC	6 cut(s)	357, 1008, 1102, 1541, 1671, 2161
Sau96I	GGNCC	6 cut(s)	235, 752, 1208, 1328, 1614, 1892
ScaI	AGTACT	1 cut(s)	2171
SchI	GAGTC	5 cut(s)	284, 644, 659, 1225, 2539
ScrFI	CCNGG	6 cut(s)	402, 1212, 1228, 2051, 2439, 2666
SduI	GDGCHC	2 cut(s)	833, 1158
SfaNI	GCATC	4 cut(s)	32, 319, 874, 2497
SfcI	CTRYAG	2 cut(s)	2400, 2619
Sfr274I	CTCGAG	2 cut(s)	1952, 2511
SgrAI	CRCCGGYG	1 cut(s)	1118
SinI	GGWCC	5 cut(s)	235, 1208, 1328, 1614, 1892
SlaI	CTCGAG	2 cut(s)	1952, 2511
SmiMI	CAYNNNNRTG	6 cut(s)	536, 1911, 1936, 1998, 2025, 2135
SmlI	CTYRAG	3 cut(s)	1440, 1952, 2511
SmoI	CTYRAG	3 cut(s)	1440, 1952, 2511
SpeI	ACTAGT	1 cut(s)	1867
Sse9I	AATT	8 cut(s)	133, 904, 958, 1159, 1268, 1336, 1651, 2059
SseBI	AGGCCT	2 cut(s)	2251, 2437
SsiI	CCGC	8 cut(s)	117, 194, 238, 406, 1169, 1307, 1364, 2417
SspMI	CTAG	4 cut(s)	1503, 1536, 1868, 2358
StuI	AGGCCT	2 cut(s)	2251, 2437
StyD4I	CCNGG	6 cut(s)	400, 1210, 1226, 2049, 2437, 2664
StyI	CCWWGG	1 cut(s)	1702
TaaI	ACNGT	3 cut(s)	185, 679, 2091
TaiI	ACGT	1 cut(s)	843
TaqI	TCGA	6 cut(s)	180, 1900, 1919, 1953, 2512, 2528
TaqII	GACCGA	1 cut(s)	898
TasI	AATT	8 cut(s)	133, 904, 958, 1159, 1268, 1336, 1651, 2059
TatI	WGTACW	5 cut(s)	1056, 1320, 1529, 1878, 2169
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	7 cut(s)	242, 371, 415, 576, 938, 1839, 2615
Tru1I	TTAA	5 cut(s)	276, 345, 1074, 1248, 1770
Tru9I	TTAA	5 cut(s)	276, 345, 1074, 1248, 1770
TscAI	CASTG	5 cut(s)	540, 682, 1138, 1836, 2610
TseFI	GTSAC	3 cut(s)	10, 1387, 2623
TseI	GCWGC	9 cut(s)	1548, 1640, 1970, 2003, 2099, 2182, 2185, 2399, 2479
Tsp45I	GTSAC	3 cut(s)	10, 1387, 2623
TspDTI	ATGAA	4 cut(s)	303, 1293, 1329, 1367
TspRI	CASTG	5 cut(s)	540, 682, 1138, 1836, 2610
VpaK11BI	GGWCC	5 cut(s)	235, 1208, 1328, 1614, 1892
VspI	ATTAAT	2 cut(s)	1074, 1770
XagI	CCTNNNNNAGG	1 cut(s)	2442
XapI	RAATTY	5 cut(s)	133, 904, 958, 1336, 2059
XbaI	TCTAGA	1 cut(s)	1535
XceI	RCATGY	2 cut(s)	934, 1798
XhoI	CTCGAG	2 cut(s)	1952, 2511
XmiI	GTMKAC	2 cut(s)	380, 1068
XspI	CTAG	4 cut(s)	1503, 1536, 1868, 2358
ZrmI	AGTACT	1 cut(s)	2171
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.