Rroxscaffold_4G00280250

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
2847941 .. 2849453
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280250.1

Sequence Viewer

Length: 1407 bp
ATGGAAGACACACCAACCCTACCTCCATCCAAAACCTATGAACTAACAGCCTCCTTAATCTCATACACCAAATCCACCACCGCAACCACCACCTTTGCTCCACTTAACTTCCTCTTCAAGCCATGCACCTCCCTTTCTTCCCCCACCTACATCCTCCGCGATGTCACCCTTACCGCCTACCCCTCCCAAATCCTTGCCGTTGTTGGCCCTAGCGGGGCCGGAAAGTCCACCCTCCTAGACATCCTAGCCGCCCGAACCTCCCCACTAGCGACCTTCTCCTTCGCCGCGTGCCTTCTCATCCCCAGCCCTAACAAGTCCAACATTGCCACCATCGTCTCCTCTCTTCTCTCCGAGCTCCGGCTGACTCACTTGACCAACACGCGGCTCGGCCACGGCCTATCCGGCGGTGAACGTCGCCGCGTTTCCATCGGCCTCAGCCTTCTCCATGACCCAGCGGTCCTACTTCTTGACGAGCCCACCTCCGGCCTCGACAGCACCTCCGCTTTCAACGTCATGCAGACCCTCAAGTCCATCTGCACCTCCCGTCACCGCACGGTGGTTCTATCAATCCACCAACCTAGCTTCAAGATCCTGTCCACCATTGATAGGATCCTGTTGCTGTCGAAAGGTGAAGTCGTCCATCACGGAACGCTTTCTTCTCTGGAAGAGTTTCTCCTCTCAAATGGCTTCACTGTCCCTCCACAGCTCAACGCCTTGGAATACACCATGGAAATTCTAAACCGCCTCACAGTCCCTAAACCTATCCCATCCACCACTATACCTCCATTAATTTCTTCTCCAAATTTTGATGATGGTGATGGAGCTCGACAAGTGGTCCGTTACAAAAGCTCTAGAATCCACGAGATTTTGACGCTTTACAATCGCTTTTGGAAAATCATATACAGAACTAGGCAGCTACTCTTAACAAACACGTTGGAGGCCTTACTTGTGGGTTTGGTTTTGGGCACCATTTACATAAACATCGGGTTTGACAAGCAAGGAATCGAGAAGAGGTTCGGTCTTTTCGCTTTCACTCTCACTTTCCTTCTTTCCTCCACAACCGAAACACTTCCAATCTTCATCAACGAAAGACCTATTGTTCTTAGAGAAACTTCCGGTGGGATTTACAGGCTCTCGTCTTATCTGATCGCCAATACCCTAGTTTTCTTGCCCTACTTGCTTGCGATTGCGATCATATACTCGGTTTCTGTCTACTTCTTGGTGGGTCTTTGCGCTAGTTGGCAAGCTTTCGCTTACTTTGTGCTGGTGATATGGATCATTGTGTTGATGGCCAACTCGTTTGTTTTGTTCTTAAGTTCCCTTGCTCCGAACTACATTGCCGGGACTTCGCTGGTGACGATTAGTCTCGGTGGTTTCTTTTCTGTTTTCCGGCTACTTTATTTCTAA

Protein Analysis

468

Amino Acids

51.5

Weight (kDa)

9.24

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 52 - 88 1.2e-07 ABC transporter
ABC_tran PF00005 112 - 161 6.8e-09 ABC transporter
ABC2_membrane_7 PF19055 191 - 253 5.2e-07 ABC-2 type transporter
ABC2_membrane PF01061 288 - 457 5.9e-34 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013296)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 455, 526
AccB1I GGYRCC 1 cut(s) 965
AccI GTMKAC 1 cut(s) 1212
AccII CGCG 4 cut(s) 159, 287, 382, 420
AclWI GGATC 4 cut(s) 583, 604, 617, 1283
AcoI YGGCCR 2 cut(s) 388, 1290
AcsI RAATTY 2 cut(s) 732, 802
AfiI CCNNNNNNNGG 6 cut(s) 214, 357, 381, 482, 556, 606
AflII CTTAAG 1 cut(s) 1312
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 3 cut(s) 118, 508, 586
AhdI GACNNNNNGTC 2 cut(s) 833, 1362
AluBI AGCT 7 cut(s) 355, 582, 706, 824, 849, 916, 1247
AluI AGCT 7 cut(s) 355, 582, 706, 824, 849, 916, 1247
Alw21I GWGCWC 2 cut(s) 357, 826
Alw26I GTCTC 2 cut(s) 340, 1370
AlwI GGATC 4 cut(s) 583, 604, 617, 1283
AoxI GGCC 8 cut(s) 205, 216, 388, 394, 430, 484, 939, 1290
ApeKI GCWGC 1 cut(s) 913
ApoI RAATTY 2 cut(s) 732, 802
AseI ATTAAT 1 cut(s) 788
Asp700I GAANNNNTTC 4 cut(s) 652, 669, 1013, 1068
AspLEI GCGC 1 cut(s) 1235
AspS9I GGNCC 4 cut(s) 206, 216, 457, 835
AsuC2I CCSGG 1 cut(s) 1342
AsuHPI GGTGA 7 cut(s) 157, 419, 539, 641, 827, 1279, 1366
AvaII GGWCC 2 cut(s) 457, 835
BaeGI GKGCMC 1 cut(s) 968
BalI TGGCCA 1 cut(s) 1292
BamHI GGATCC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 965
BanII GRGCYC 3 cut(s) 357, 477, 826
BauI CACGAG 1 cut(s) 860
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 357, 826
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 925
BccI CCATC 9 cut(s) 34, 338, 434, 539, 648, 775, 806, 812, 1282
BceAI ACGGC 2 cut(s) 182, 409
BcnI CCSGG 1 cut(s) 1342
BcoDI GTCTC 2 cut(s) 340, 1370
BfaI CTAG 9 cut(s) 210, 236, 245, 266, 579, 852, 909, 1160, 1236
BfrI CTTAAG 1 cut(s) 1312
BglI GCCNNNNNGGC 1 cut(s) 402
BisI GCNGC 5 cut(s) 249, 285, 383, 418, 914
BlsI GCNGC 5 cut(s) 250, 286, 384, 419, 915
Bme1390I CCNGG 1 cut(s) 1342
Bme18I GGWCC 2 cut(s) 457, 835
BmeRI GACNNNNNGTC 2 cut(s) 833, 1362
BmgT120I GGNCC 4 cut(s) 206, 216, 457, 835
BmiI GGNNCC 3 cut(s) 217, 611, 967
BmrFI CCNGG 1 cut(s) 1342
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 1342
BsaBI GATNNNNATC 2 cut(s) 1190, 1274
BsaJI CCNNGG 3 cut(s) 391, 714, 726
BsaWI WCCGGW 1 cut(s) 1115
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 357, 381, 482, 556, 606
Bse3DI GCAATG 2 cut(s) 321, 1335
Bse8I GATNNNNATC 2 cut(s) 1190, 1274
BseDI CCNNGG 3 cut(s) 391, 714, 726
BseGI GGATG 5 cut(s) 26, 150, 240, 297, 767
BseJI GATNNNNATC 2 cut(s) 1190, 1274
BseLI CCNNNNNNNGG 6 cut(s) 214, 357, 381, 482, 556, 606
BseMI GCAATG 2 cut(s) 321, 1335
BseMII CTCAG 1 cut(s) 448
BseRI GAGGAG 2 cut(s) 328, 665
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 1 cut(s) 925
BseYI CCCAGC 2 cut(s) 302, 451
BsgI GTGCAG 1 cut(s) 520
Bsh1236I CGCG 4 cut(s) 159, 287, 382, 420
BshFI GGCC 8 cut(s) 207, 218, 390, 396, 432, 486, 941, 1292
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 2 cut(s) 357, 826
BsiSI CCGG 7 cut(s) 219, 358, 402, 483, 1116, 1341, 1390
BslFI GGGAC 3 cut(s) 680, 737, 1357
BslI CCNNNNNNNGG 6 cut(s) 214, 357, 381, 482, 556, 606
BsmAI GTCTC 2 cut(s) 340, 1370
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 3 cut(s) 680, 737, 1357
BsnI GGCC 8 cut(s) 207, 218, 390, 396, 432, 486, 941, 1292
Bsp1286I GDGCHC 4 cut(s) 357, 477, 826, 968
Bsp143I GATC 5 cut(s) 588, 609, 1146, 1191, 1275
Bsp19I CCATGG 1 cut(s) 726
BspANI GGCC 8 cut(s) 207, 218, 390, 396, 432, 486, 941, 1292
BspCNI CTCAG 1 cut(s) 447
BspFNI CGCG 4 cut(s) 159, 287, 382, 420
BspLI GGNNCC 3 cut(s) 217, 611, 967
BspPI GGATC 4 cut(s) 583, 604, 617, 1283
BspT107I GGYRCC 1 cut(s) 965
BspTI CTTAAG 1 cut(s) 1312
BsrDI GCAATG 2 cut(s) 321, 1335
BssECI CCNNGG 3 cut(s) 391, 714, 726
BssMI GATC 5 cut(s) 588, 609, 1146, 1191, 1275
BssSI CACGAG 1 cut(s) 860
BssT1I CCWWGG 2 cut(s) 714, 726
Bst2BI CACGAG 1 cut(s) 860
Bst4CI ACNGT 3 cut(s) 556, 694, 751
Bst6I CTCTTC 4 cut(s) 119, 348, 660, 1004
BstAFI CTTAAG 1 cut(s) 1312
BstC8I GCNNGC 3 cut(s) 289, 1182, 1245
BstDEI CTNAG 2 cut(s) 434, 1103
BstDSI CCRYGG 2 cut(s) 391, 726
BstF5I GGATG 5 cut(s) 26, 150, 240, 297, 767
BstFNI CGCG 4 cut(s) 159, 287, 382, 420
BstHHI GCGC 1 cut(s) 1235
BstKTI GATC 5 cut(s) 591, 612, 1149, 1194, 1278
BstMAI GTCTC 2 cut(s) 340, 1370
BstMBI GATC 5 cut(s) 588, 609, 1146, 1191, 1275
BstMWI GCNNNNNNNGC 3 cut(s) 402, 492, 1177
BstSCI CCNGG 1 cut(s) 1340
BstSLI GKGCMC 1 cut(s) 968
BstUI CGCG 4 cut(s) 159, 287, 382, 420
BstV1I GCAGC 1 cut(s) 925
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 588, 609
BstYI RGATCY 2 cut(s) 588, 609
BsuRI GGCC 8 cut(s) 207, 218, 390, 396, 432, 486, 941, 1292
BtgI CCRYGG 2 cut(s) 391, 726
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 5 cut(s) 26, 150, 240, 297, 767
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 289, 1182, 1245
CfoI GCGC 1 cut(s) 1235
Cfr13I GGNCC 4 cut(s) 206, 216, 457, 835
CseI GACGC 1 cut(s) 880
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 4 cut(s) 123, 446, 514, 727
DdeI CTNAG 2 cut(s) 434, 1103
DpnI GATC 5 cut(s) 590, 611, 1148, 1193, 1277
DpnII GATC 5 cut(s) 588, 609, 1146, 1191, 1275
DrdI GACNNNNNNGTC 2 cut(s) 455, 526
DriI GACNNNNNGTC 2 cut(s) 833, 1362
DseDI GACNNNNNNGTC 2 cut(s) 455, 526
EaeI YGGCCR 2 cut(s) 388, 1290
Eam1104I CTCTTC 4 cut(s) 119, 348, 660, 1004
Eam1105I GACNNNNNGTC 2 cut(s) 833, 1362
EarI CTCTTC 4 cut(s) 119, 348, 660, 1004
Ecl136II GAGCTC 2 cut(s) 355, 824
Eco130I CCWWGG 2 cut(s) 714, 726
Eco147I AGGCCT 1 cut(s) 941
Eco24I GRGCYC 3 cut(s) 357, 477, 826
Eco47I GGWCC 2 cut(s) 457, 835
Eco53kI GAGCTC 2 cut(s) 355, 824
EcoICRI GAGCTC 2 cut(s) 355, 824
EcoT14I CCWWGG 2 cut(s) 714, 726
EcoT38I GRGCYC 3 cut(s) 357, 477, 826
ErhI CCWWGG 2 cut(s) 714, 726
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 4 cut(s) 126, 449, 517, 730
FaqI GGGAC 3 cut(s) 680, 737, 1357
FatI CATG 4 cut(s) 122, 445, 513, 726
FauI CCCGC 1 cut(s) 206
FblI GTMKAC 1 cut(s) 1212
Fnu4HI GCNGC 5 cut(s) 249, 285, 383, 418, 914
FokI GGATG 5 cut(s) 13, 137, 227, 284, 754
FriOI GRGCYC 3 cut(s) 357, 477, 826
Fsp4HI GCNGC 5 cut(s) 249, 285, 383, 418, 914
FspBI CTAG 9 cut(s) 210, 236, 245, 266, 579, 852, 909, 1160, 1236
GlaI GCGC 1 cut(s) 1234
GluI GCNGC 5 cut(s) 249, 285, 383, 418, 914
GsaI CCCAGC 2 cut(s) 306, 455
HaeIII GGCC 8 cut(s) 207, 218, 390, 396, 432, 486, 941, 1292
HapII CCGG 7 cut(s) 219, 358, 402, 483, 1116, 1341, 1390
HgaI GACGC 1 cut(s) 880
HhaI GCGC 1 cut(s) 1235
Hin1II CATG 4 cut(s) 126, 449, 517, 730
Hin6I GCGC 1 cut(s) 1233
HinP1I GCGC 1 cut(s) 1233
HindIII AAGCTT 1 cut(s) 1245
HinfI GANTC 3 cut(s) 364, 855, 1002
HpaII CCGG 7 cut(s) 219, 358, 402, 483, 1116, 1341, 1390
HphI GGTGA 7 cut(s) 157, 419, 539, 641, 827, 1279, 1366
Hpy166II GTNNAC 4 cut(s) 228, 410, 597, 1213
Hpy188I TCNGA 3 cut(s) 352, 1146, 1329
Hpy188III TCNNGA 5 cut(s) 467, 586, 662, 852, 1006
Hpy8I GTNNAC 4 cut(s) 228, 410, 597, 1213
Hpy99I CGWCG 1 cut(s) 417
HpyAV CCTTC 5 cut(s) 283, 289, 302, 449, 1055
HpyCH4III ACNGT 3 cut(s) 556, 694, 751
HpyCH4IV ACGT 3 cut(s) 412, 510, 932
HpyCH4V TGCA 3 cut(s) 126, 517, 537
HpyF10VI GCNNNNNNNGC 3 cut(s) 402, 492, 1177
HpyF3I CTNAG 2 cut(s) 434, 1103
HpySE526I ACGT 3 cut(s) 412, 510, 932
Hsp92II CATG 4 cut(s) 126, 449, 517, 730
HspAI GCGC 1 cut(s) 1233
Kzo9I GATC 5 cut(s) 588, 609, 1146, 1191, 1275
LmnI GCTCC 4 cut(s) 103, 360, 821, 1330
Lsp1109I GCAGC 1 cut(s) 925
MaeI CTAG 9 cut(s) 210, 236, 245, 266, 579, 852, 909, 1160, 1236
MaeII ACGT 3 cut(s) 412, 510, 932
MaeIII GTNAC 4 cut(s) 163, 545, 839, 1354
MalI GATC 5 cut(s) 590, 611, 1148, 1193, 1277
MboI GATC 5 cut(s) 588, 609, 1146, 1191, 1275
MboII GAAGA 9 cut(s) 17, 106, 129, 335, 648, 677, 786, 1021, 1069
MflI RGATCY 2 cut(s) 588, 609
MhlI GDGCHC 4 cut(s) 357, 477, 826, 968
MlsI TGGCCA 1 cut(s) 1292
MluCI AATT 3 cut(s) 732, 789, 802
MluNI TGGCCA 1 cut(s) 1292
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 2 cut(s) 342, 915
Mox20I TGGCCA 1 cut(s) 1292
MroXI GAANNNNTTC 4 cut(s) 652, 669, 1013, 1068
MscI TGGCCA 1 cut(s) 1292
MseI TTAA 5 cut(s) 56, 105, 788, 923, 1313
Msp20I TGGCCA 1 cut(s) 1292
MspA1I CMGCKG 1 cut(s) 455
MspCI CTTAAG 1 cut(s) 1312
MspI CCGG 7 cut(s) 219, 358, 402, 483, 1116, 1341, 1390
MspR9I CCNGG 1 cut(s) 1342
MvnI CGCG 4 cut(s) 159, 287, 382, 420
MwoI GCNNNNNNNGC 3 cut(s) 402, 492, 1177
NciI CCSGG 1 cut(s) 1342
NcoI CCATGG 1 cut(s) 726
NdeII GATC 5 cut(s) 588, 609, 1146, 1191, 1275
NlaIII CATG 4 cut(s) 126, 449, 517, 730
NlaIV GGNNCC 3 cut(s) 217, 611, 967
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 3 cut(s) 163, 545, 1354
PceI AGGCCT 1 cut(s) 941
PcsI WCGNNNNNNNCGW 1 cut(s) 1355
PdmI GAANNNNTTC 4 cut(s) 652, 669, 1013, 1068
PfeI GAWTC 2 cut(s) 855, 1002
PkrI GCNGC 5 cut(s) 250, 286, 384, 419, 915
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PshBI ATTAAT 1 cut(s) 788
Psp124BI GAGCTC 2 cut(s) 357, 826
PspFI CCCAGC 2 cut(s) 302, 451
PspN4I GGNNCC 3 cut(s) 217, 611, 967
PspPI GGNCC 4 cut(s) 206, 216, 457, 835
PsuI RGATCY 2 cut(s) 588, 609
SacI GAGCTC 2 cut(s) 357, 826
SaqAI TTAA 5 cut(s) 56, 105, 788, 923, 1313
SatI GCNGC 5 cut(s) 249, 285, 383, 418, 914
Sau3AI GATC 5 cut(s) 588, 609, 1146, 1191, 1275
Sau96I GGNCC 4 cut(s) 206, 216, 457, 835
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 1342
SduI GDGCHC 4 cut(s) 357, 477, 826, 968
SinI GGWCC 2 cut(s) 457, 835
SmlI CTYRAG 2 cut(s) 524, 1312
SmoI CTYRAG 2 cut(s) 524, 1312
Sse9I AATT 3 cut(s) 732, 789, 802
SseBI AGGCCT 1 cut(s) 941
SspMI CTAG 9 cut(s) 210, 236, 245, 266, 579, 852, 909, 1160, 1236
SstI GAGCTC 2 cut(s) 357, 826
StuI AGGCCT 1 cut(s) 941
StyD4I CCNGG 1 cut(s) 1340
StyI CCWWGG 2 cut(s) 714, 726
TaaI ACNGT 3 cut(s) 556, 694, 751
TaiI ACGT 3 cut(s) 415, 513, 935
TaqI TCGA 4 cut(s) 489, 623, 826, 1005
TaqII GACCGA 1 cut(s) 1007
TasI AATT 3 cut(s) 732, 789, 802
TauI GCSGC 4 cut(s) 251, 287, 385, 420
TfiI GAWTC 2 cut(s) 855, 1002
Tru1I TTAA 5 cut(s) 56, 105, 788, 923, 1313
Tru9I TTAA 5 cut(s) 56, 105, 788, 923, 1313
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 3 cut(s) 163, 545, 1354
TseI GCWGC 1 cut(s) 913
Tsp45I GTSAC 3 cut(s) 163, 545, 1354
TspDTI ATGAA 2 cut(s) 54, 1069
TspGWI ACGGA 2 cut(s) 660, 827
TspRI CASTG 1 cut(s) 697
Vha464I CTTAAG 1 cut(s) 1312
VpaK11BI GGWCC 2 cut(s) 457, 835
VspI ATTAAT 1 cut(s) 788
XapI RAATTY 2 cut(s) 732, 802
XbaI TCTAGA 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 1212
XmnI GAANNNNTTC 4 cut(s) 652, 669, 1013, 1068
XspI CTAG 9 cut(s) 210, 236, 245, 266, 579, 852, 909, 1160, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.