Rorug01G0411600

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013296
Physical Location & Seq
Reverse (-)
51632125 .. 51632550
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0411600.1

Sequence Viewer

Length: 426 bp
ATGGTGATTCAAGAAGTCATGCGTCTATACCCACCAGCTGCTTTTGTATCAAGAGAAGCACTTGAAGACACCCAGGTGGGAAACATAAGCATTCCGAAAGGGGTATACTTGTGGACTTTGATCCCAACATTGCACAGAGACACAGACATTTGGGGACAAGATGCAAATGAATTCAAACCTGAGAGGTTCATTGATGGTGTCTCAAAGGCTTGCAAGTTTCCTCAAGCCTATATCCCCTTTGGTTTGGGTCCTCGAACCTGTTTAGGCAAAAACTTTGCTATGGTACAATTGAAGGTTGTCCTCTCCCTCATTATCTCCAAGTTCACTTTCTCTCTATCACCCAAATACAGACACTCCCCTGCTTTCAAAATGATTGTAGAGCCTGGAAACGGTGTACATATTCTCATTCAAAAATCTCATCTGTAG

Protein Analysis

141

Amino Acids

15.9

Weight (kDa)

9.36

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 121 4.5e-36 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52860
fragaria_vesca FvH4_2g03830 FvH4_2g03830
malus_domestica MD01G1210800.v1.1
prunus_persica Prupe.2G303100_v2.0.a1
pyrus_communis pycom01g22130 pycom07g25560
rosa_chinensis RchiOBHm_Chr1g0378951
rosa_laevigata RLG00000026406
rosa_multiflora Rmu_sc0006761.1_g000007
rosa_roxburghii Rroxscaffold_4G00280220 Rroxscaffold_4G00280250
rosa_rugosa Rorug01G0411600
rosa_samantha Rh1AG434200 Rh1BG391900 Rh1CG404700 Rh1DG422900
rosa_wichuraiana Rw1G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 2 cut(s) 285, 396
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 6 cut(s) 11, 65, 175, 292, 367, 410
AjnI CCWGG 2 cut(s) 72, 382
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 132, 205
AlwI GGATC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 16, 330
AvaII GGWCC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 74, 384
BcoDI GTCTC 2 cut(s) 132, 205
BfmI CTRYAG 1 cut(s) 422
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 74, 384
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 74, 384
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 74, 384
BseDI CCNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 25
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 132, 205
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 394
Bsp143I GATC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 120
BssNAI GTATAC 1 cut(s) 106
Bst1107I GTATAC 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 74, 384
Bst4CI ACNGT 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 180
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 2 cut(s) 132, 205
BstMBI GATC 1 cut(s) 120
BstNI CCWGG 2 cut(s) 74, 384
BstSCI CCNGG 2 cut(s) 72, 382
BstSFI CTRYAG 1 cut(s) 422
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 72
BstZ17I GTATAC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 1 cut(s) 11
Csp6I GTAC 2 cut(s) 284, 395
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 38, 209, 227, 382
CviKI_1 RGCY 4 cut(s) 38, 209, 227, 382
CviQI GTAC 2 cut(s) 284, 395
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 72, 382
FaeI CATG 1 cut(s) 22
FaiI YATR 7 cut(s) 20, 28, 86, 106, 231, 281, 399
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 18
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HgaI GACGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 22
HinfI GANTC 1 cut(s) 7
HphI GGTGA 2 cut(s) 16, 330
Hpy166II GTNNAC 4 cut(s) 106, 114, 324, 395
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 11, 51
Hpy8I GTNNAC 4 cut(s) 106, 114, 324, 395
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 133, 164, 213
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 8 cut(s) 48, 59, 86, 192, 271, 369, 372, 396
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 151
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 287
MluCI AATT 2 cut(s) 170, 287
MnlI CCTC 5 cut(s) 177, 231, 261, 311, 317
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 74, 384
MunI CAATTG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 2 cut(s) 74, 384
NdeII GATC 1 cut(s) 120
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 249
OliI CACNNNNGTG 1 cut(s) 74
PctI GAATGC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 72, 382
PspGI CCWGG 2 cut(s) 72, 382
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 285, 396
RsaNI GTAC 2 cut(s) 284, 395
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 74, 384
SetI ASST 6 cut(s) 40, 78, 181, 188, 260, 297
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 422
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 2 cut(s) 170, 287
StyD4I CCNGG 2 cut(s) 72, 382
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 253
TasI AATT 2 cut(s) 170, 287
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 1 cut(s) 7
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 178, 183
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.