Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011054

Physical Location & Seq

Genomic Coordinates Forward (+)

14088515 .. 14092123

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGGGTCTGACGGGGGACCATCCGGGGAGGTCGGTGCTGAGTCAACTCGTTGACTCGGTGAAGGCGATTGCCGAGTTGCCGGAGTGCCGGAACGTGTTTAGGAAGATGTATGGGAATTTCGTGAGGAGGGTGAAGCTGTTGAGTCCTTTGTTTGAGGAGTTGAGGGATAGTGACAAGGAGCTTGGGGAAGAAGAAGTTGAGGCTTTTGAGTCACTGGGAGAGGCTTTGTGTTCGGCTATGGAGCTCATCAAGTCGGTGAACCGAGGCAGCAAGCTTTATCAGGCTTTGGAAAGAGACAAGGTTATTACTAAGTTTCACCAAATGACGGTTAAAATTGAAGCAGAATTGAGTAAAATTCCTTATGGAAACTTTGATATGTCAGAGGAGGTCTGCGAACAGATTGAACTAGTACATGCTCAATTTAAAAGAGCAAAGGAAAAAATGGACACTCTTGACTCACAACTAGAGATGGATTTAGTCATAGCCGTGAGAGATAAGGATCCTGATACTGCAATAATTAAGAGACTTTCGGAGAAGCTGCACCTCAGAACCATCAACGATCTGAAACAAGAGTCACTTGCTTTCCATGAATTGGTTATAGCAAGTGGCGGAGATCTAGGGGACCAGTTTGAACAGATGCAAGCTCTTTTTAAGAAGCTAAATGACTATGTGGTGACAGAAAACCCAGAAATTGACAGCTCTGAACGTGACAAGGGCATGATCAAGCACAGATCTCCAGTTATCCCAGATGATTTCCGGTGTCCAATATCTCTAGAATTGATGAAAGATCCTGTCATTGTATCTACTGGACAGACATATGAAAGATCCTGTATTCAGAAGTGGTTGGATGCTGGACACAAAACCTGTCCCAAAACACAGCAGACACTATTGCACACAGCCATAACCCCAAACTATGTTCTGAAGAGTCTAATTTCTTTGTGGTGCGAGAGCAATGGCGTTGAGCTACCCAAAAAGCAAGGGAATAAAAGCAAAAAACCAGGATGCAGTGTTTCAGACTGTGATCGTGCTTCTATTGATTCTTTATTAGAAAAATTGGCAAAGGGGAGTTCAGATGAACAAAGAGCAGCTGCTGGAGAGCTCCGCTTGCTGGCAAAAAGGAATGCAGATAATAGAGTGTGTATTGCTGATGCAGGAGCCATCCCACTCCTTGTTGAGCTTCTATCCTCCCCAGATCCTCGGACCCAAGAGCACGCCGTTACAGCACTCCTTAACCTTTCAATAAATGAGAGTAACAAGGGAGCAATTGTCATTGCAGGAGCTATACCTGATATAGTAGAAGTTTTGAAAAATGGTAGCATGGAGGCTAGAGAAAATGCAGCTGCAACCCTTTTCAGCTTGTCTGTAGTAGATGAGAACAAGGTGCAAATTGGAGCTGCTGGGGCTATCCCAGCCCTTATAAAATTGCTCTGCGAGGGGACTCCAAGAGGAAAAAAGGATGCTGCTACAGCTATATTCAATCTTTCGATCTACCAGGGAAACAAGGCCAGGGCTGTAAGGGCTGGTATTGTGACCCCGCTGATGAGATTGCTCAAGGATGCGGGAAGTGGGATGGTGGATGAAGCTCTTGCAATCCTGGCCATTCTGGCAAGCCATCACGAAGGAAAGGTGGCAATTGCTCAAGCTGAGGCAATCCCAGTTTTGGTGGAAGTTATACGAACTGGTTTCCCACGGAACCGGGAGAATGCTGCTGCTGTGTTATGGTCATTATGCACAGGTGATTTGCAGCAGTTGAAACTAGCAAGGGAACTTGGTGCAGAAGAAGCATTGCAGGAACTTTCAGAAAATGGCACTGATAGGGCCAAGAGAAAAGCTGGAAATGTTTTAGAGCTCCTTCAACGAATCGATGACCCTGCTAGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

627

Amino Acids

68.73

Weight (kDa)

5.62

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB2_N	PF25240	11 - 120	7e-06	PUB2-like, N-terminal domain
PUB10_N	PF25368	34 - 145	2.7e-33	PUB10-like, N-terminal domain
U-box	PF04564	248 - 318	3.1e-21	U-box domain
ARM_ARMC5	PF24768	327 - 480	3.3e-09	ARMC5
ARM_PUB	PF25598	345 - 619	6.7e-24	Plant U-box protein ARM repeat region
Arm	PF00514	374 - 413	2e-11	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	411 - 578	4.1e-09	ARMC5
Arm	PF00514	457 - 495	1.7e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54850
fragaria_vesca	FvH4_7g18840 FvH4_7g18840 FvH4_7g18840
malus_domestica	MD01G1103500.v1.1 MD07G1170400.v1.1
prunus_persica	Prupe.2G209300_v2.0.a1
pyrus_communis	pycom01g13000 pycom07g16430
rosa_chinensis	RchiOBHm_Chr1g0362651
rosa_laevigata	RLG00000027631
rosa_multiflora	Rmu_sc0000046.1_g000030
rosa_roxburghii	Rroxscaffold_4G00293880
rosa_rugosa	Rorug01G0300300.1 Rorug01G0300400
rosa_samantha	Rh1AG308900 Rh1BG272700 Rh1CG290000 Rh1DG303200
rosa_wichuraiana	Rw1G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1418
AccB7I	CCANNNNNTGG	1 cut(s)	592
AciI	CCGC	4 cut(s)	609, 1102, 1535, 1559
AclWI	GGATC	5 cut(s)	494, 507, 782, 819, 1187
AcoI	YGGCCR	1 cut(s)	1596
AcsI	RAATTY	2 cut(s)	115, 354
AcuI	CTGAAG	1 cut(s)	941
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	4 cut(s)	325, 592, 1108, 1660
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	8 cut(s)	338, 404, 632, 1239, 1306, 1477, 1753, 1856
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	4 cut(s)	997, 1491, 1505, 1593
Alw21I	GWGCWC	4 cut(s)	246, 1101, 1212, 1851
Alw26I	GTCTC	2 cut(s)	288, 517
AlwI	GGATC	5 cut(s)	494, 507, 782, 819, 1187
AlwNI	CAGNNNCTG	1 cut(s)	1091
AoxI	GGCC	3 cut(s)	1503, 1596, 1818
ApoI	RAATTY	2 cut(s)	115, 354
AspS9I	GGNCC	4 cut(s)	16, 622, 1200, 1818
AsuC2I	CCSGG	2 cut(s)	24, 1697
AsuHPI	GGTGA	6 cut(s)	70, 142, 268, 308, 685, 1748
AvaII	GGWCC	3 cut(s)	16, 622, 1200
BalI	TGGCCA	1 cut(s)	1598
BamHI	GGATCC	1 cut(s)	499
BanII	GRGCYC	3 cut(s)	246, 1101, 1851
Bbv12I	GWGCWC	4 cut(s)	246, 1101, 1212, 1851
BbvCI	CCTCAGC	1 cut(s)	1644
BccI	CCATC	6 cut(s)	27, 463, 560, 1166, 1564, 1620
BceAI	ACGGC	2 cut(s)	470, 1199
BcgI	CGANNNNNNTGC	1 cut(s)	1853
BciT130I	CCWGG	4 cut(s)	999, 1493, 1507, 1595
BclI	TGATCA	1 cut(s)	720
BcnI	CCSGG	2 cut(s)	24, 1697
BcoDI	GTCTC	2 cut(s)	288, 517
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	7 cut(s)	407, 464, 617, 773, 1326, 1757, 1875
BfmI	CTRYAG	2 cut(s)	1362, 1464
BglI	GCCNNNNNGGC	1 cut(s)	1604
BglII	AGATCT	2 cut(s)	613, 731
Bme1390I	CCNGG	6 cut(s)	24, 999, 1493, 1507, 1595, 1697
Bme18I	GGWCC	3 cut(s)	16, 622, 1200
BmgT120I	GGNCC	4 cut(s)	16, 622, 1200, 1818
BmiI	GGNNCC	6 cut(s)	17, 501, 623, 1156, 1202, 1694
BmrFI	CCNGG	6 cut(s)	24, 999, 1493, 1507, 1595, 1697
BmrI	ACTGGG	2 cut(s)	224, 1649
BmsI	GCATC	6 cut(s)	627, 838, 992, 1138, 1447, 1546
BmuI	ACTGGG	2 cut(s)	224, 1649
BpmI	CTGGAG	2 cut(s)	720, 1113
Bpu10I	CCTNAGC	1 cut(s)	1644
BpuEI	CTTGAG	2 cut(s)	1535, 1623
BpuMI	CCSGG	2 cut(s)	24, 1697
Bsa29I	ATCGAT	1 cut(s)	1863
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	6 cut(s)	23, 262, 1196, 1492, 1506, 1688
BsaWI	WCCGGW	1 cut(s)	756
BsaXI	ACNNNNNCTCC	2 cut(s)	1251, 1281
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 592, 1108, 1660
Bse1I	ACTGG	6 cut(s)	219, 625, 737, 811, 1655, 1684
Bse3DI	GCAATG	3 cut(s)	958, 1269, 1784
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	4 cut(s)	999, 1493, 1507, 1595
BseCI	ATCGAT	1 cut(s)	1863
BseDI	CCNNGG	6 cut(s)	23, 262, 1196, 1492, 1506, 1688
BseGI	GGATG	8 cut(s)	19, 853, 1007, 1158, 1462, 1561, 1575, 1582
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	4 cut(s)	325, 592, 1108, 1660
BseMI	GCAATG	3 cut(s)	958, 1269, 1784
BseMII	CTCAG	3 cut(s)	29, 559, 1635
BseNI	ACTGG	6 cut(s)	219, 625, 737, 811, 1655, 1684
BseRI	GAGGAG	3 cut(s)	139, 170, 398
BseYI	CCCAGC	2 cut(s)	1397, 1408
BsgI	GTGCAG	2 cut(s)	524, 1794
BshFI	GGCC	3 cut(s)	1505, 1598, 1820
BshVI	ATCGAT	1 cut(s)	1863
BsiHKAI	GWGCWC	4 cut(s)	246, 1101, 1212, 1851
BsiSI	CCGG	5 cut(s)	23, 80, 88, 757, 1696
BslFI	GGGAC	4 cut(s)	29, 635, 852, 1450
BslI	CCNNNNNNNGG	4 cut(s)	325, 592, 1108, 1660
BsmAI	GTCTC	2 cut(s)	288, 517
BsmFI	GGGAC	4 cut(s)	29, 635, 852, 1450
BsmI	GAATGC	2 cut(s)	1126, 1708
BsnI	GGCC	3 cut(s)	1505, 1598, 1820
Bsp1286I	GDGCHC	4 cut(s)	246, 1101, 1212, 1851
BspACI	CCGC	4 cut(s)	609, 1102, 1535, 1559
BspANI	GGCC	3 cut(s)	1505, 1598, 1820
BspCNI	CTCAG	3 cut(s)	30, 558, 1636
BspDI	ATCGAT	1 cut(s)	1863
BspLI	GGNNCC	6 cut(s)	17, 501, 623, 1156, 1202, 1694
BspPI	GGATC	5 cut(s)	494, 507, 782, 819, 1187
BsrDI	GCAATG	3 cut(s)	958, 1269, 1784
BsrI	ACTGG	6 cut(s)	219, 625, 737, 811, 1655, 1684
BssECI	CCNNGG	6 cut(s)	23, 262, 1196, 1492, 1506, 1688
Bst2UI	CCWGG	4 cut(s)	999, 1493, 1507, 1595
Bst4CI	ACNGT	2 cut(s)	328, 1019
Bst6I	CTCTTC	1 cut(s)	917
BstC8I	GCNNGC	6 cut(s)	272, 642, 1106, 1110, 1212, 1609
BstDEI	CTNAG	4 cut(s)	38, 309, 545, 1644
BstDSI	CCRYGG	1 cut(s)	1688
BstF5I	GGATG	8 cut(s)	19, 853, 1007, 1158, 1462, 1561, 1575, 1582
BstMAI	GTCTC	2 cut(s)	288, 517
BstMWI	GCNNNNNNNGC	9 cut(s)	1105, 1220, 1400, 1409, 1466, 1517, 1595, 1604, 1781
BstNI	CCWGG	4 cut(s)	999, 1493, 1507, 1595
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	6 cut(s)	22, 997, 1491, 1505, 1593, 1695
BstSFI	CTRYAG	2 cut(s)	1362, 1464
BstX2I	RGATCY	6 cut(s)	499, 613, 731, 787, 824, 1192
BstYI	RGATCY	6 cut(s)	499, 613, 731, 787, 824, 1192
Bsu15I	ATCGAT	1 cut(s)	1863
BsuRI	GGCC	3 cut(s)	1505, 1598, 1820
BsuTUI	ATCGAT	1 cut(s)	1863
BtgI	CCRYGG	1 cut(s)	1688
BtsCI	GGATG	8 cut(s)	19, 853, 1007, 1158, 1462, 1561, 1575, 1582
BtsI	GCAGTG	1 cut(s)	1012
BtsIMutI	CAGTG	3 cut(s)	212, 1012, 1809
Cac8I	GCNNGC	6 cut(s)	272, 642, 1106, 1110, 1212, 1609
CaiI	CAGNNNCTG	1 cut(s)	1091
Cfr13I	GGNCC	4 cut(s)	16, 622, 1200, 1818
ClaI	ATCGAT	1 cut(s)	1863
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	4 cut(s)	413, 587, 718, 1318
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	4 cut(s)	38, 309, 545, 1644
DraI	TTTAAA	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	1596
Eam1104I	CTCTTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	917
EciI	GGCGGA	1 cut(s)	624
Ecl136II	GAGCTC	3 cut(s)	244, 1099, 1849
Eco24I	GRGCYC	3 cut(s)	246, 1101, 1851
Eco47I	GGWCC	3 cut(s)	16, 622, 1200
Eco53kI	GAGCTC	3 cut(s)	244, 1099, 1849
Eco57I	CTGAAG	1 cut(s)	941
EcoICRI	GAGCTC	3 cut(s)	244, 1099, 1849
EcoRII	CCWGG	4 cut(s)	997, 1491, 1505, 1593
EcoT38I	GRGCYC	3 cut(s)	246, 1101, 1851
FaeI	CATG	4 cut(s)	416, 590, 721, 1321
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	4 cut(s)	29, 635, 852, 1450
FatI	CATG	4 cut(s)	412, 586, 717, 1317
FauI	CCCGC	2 cut(s)	1542, 1552
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	1 cut(s)	720
FokI	GGATG	8 cut(s)	6, 860, 1014, 1145, 1469, 1568, 1582, 1589
FriOI	GRGCYC	3 cut(s)	246, 1101, 1851
FspBI	CTAG	7 cut(s)	407, 464, 617, 773, 1326, 1757, 1875
GsaI	CCCAGC	2 cut(s)	1401, 1412
GsuI	CTGGAG	2 cut(s)	720, 1113
HaeIII	GGCC	3 cut(s)	1505, 1598, 1820
HapII	CCGG	5 cut(s)	23, 80, 88, 757, 1696
Hin1II	CATG	4 cut(s)	416, 590, 721, 1321
HincII	GTYRAC	2 cut(s)	44, 52
HindII	GTYRAC	2 cut(s)	44, 52
HindIII	AAGCTT	1 cut(s)	272
HpaII	CCGG	5 cut(s)	23, 80, 88, 757, 1696
HphI	GGTGA	6 cut(s)	70, 142, 268, 308, 685, 1748
Hpy166II	GTNNAC	3 cut(s)	44, 52, 259
Hpy188III	TCNNGA	5 cut(s)	121, 452, 503, 773, 1616
Hpy8I	GTNNAC	3 cut(s)	44, 52, 259
HpyAV	CCTTC	3 cut(s)	55, 1613, 1862
HpyCH4III	ACNGT	2 cut(s)	328, 1019
HpyCH4IV	ACGT	2 cut(s)	93, 706
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1105, 1220, 1400, 1409, 1466, 1517, 1595, 1604, 1781
HpyF3I	CTNAG	4 cut(s)	38, 309, 545, 1644
HpySE526I	ACGT	2 cut(s)	93, 706
Hsp92II	CATG	4 cut(s)	416, 590, 721, 1321
Ksp22I	TGATCA	1 cut(s)	720
LmnI	GCTCC	8 cut(s)	178, 241, 1104, 1154, 1259, 1277, 1391, 1854
LweI	GCATC	6 cut(s)	627, 838, 992, 1138, 1447, 1546
MaeI	CTAG	7 cut(s)	407, 464, 617, 773, 1326, 1757, 1875
MaeII	ACGT	2 cut(s)	93, 706
MaeIII	GTNAC	8 cut(s)	170, 210, 573, 673, 707, 1216, 1250, 1528
MboII	GAAGA	5 cut(s)	115, 200, 203, 934, 1790
MfeI	CAATTG	2 cut(s)	1263, 1632
MflI	RGATCY	6 cut(s)	499, 613, 731, 787, 824, 1192
MhlI	GDGCHC	4 cut(s)	246, 1101, 1212, 1851
MlsI	TGGCCA	1 cut(s)	1598
MluNI	TGGCCA	1 cut(s)	1598
MlyI	GAGTC	8 cut(s)	47, 49, 151, 218, 449, 581, 934, 1432
MmeI	TCCRAC	1 cut(s)	825
Mox20I	TGGCCA	1 cut(s)	1598
MscI	TGGCCA	1 cut(s)	1598
MseI	TTAA	5 cut(s)	330, 423, 519, 651, 1230
MslI	CAYNNNNRTG	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	1598
MspA1I	CMGCKG	3 cut(s)	1088, 1340, 1537
MspI	CCGG	5 cut(s)	23, 80, 88, 757, 1696
MspR9I	CCNGG	6 cut(s)	24, 999, 1493, 1507, 1595, 1697
MunI	CAATTG	2 cut(s)	1263, 1632
Mva1269I	GAATGC	2 cut(s)	1126, 1708
MvaI	CCWGG	4 cut(s)	999, 1493, 1507, 1595
MwoI	GCNNNNNNNGC	9 cut(s)	1105, 1220, 1400, 1409, 1466, 1517, 1595, 1604, 1781
NciI	CCSGG	2 cut(s)	24, 1697
NdeI	CATATG	1 cut(s)	817
NlaIII	CATG	4 cut(s)	416, 590, 721, 1321
NlaIV	GGNNCC	6 cut(s)	17, 501, 623, 1156, 1202, 1694
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	6 cut(s)	170, 210, 573, 673, 707, 1528
NspI	RCATGY	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	2 cut(s)	1126, 1708
PfeI	GAWTC	2 cut(s)	1037, 1860
PflMI	CCANNNNNTGG	1 cut(s)	592
PleI	GAGTC	8 cut(s)	47, 48, 150, 217, 449, 580, 933, 1432
PpsI	GAGTC	8 cut(s)	47, 48, 150, 217, 449, 580, 933, 1432
PsiI	TTATAA	1 cut(s)	1418
Psp124BI	GAGCTC	3 cut(s)	246, 1101, 1851
Psp6I	CCWGG	4 cut(s)	997, 1491, 1505, 1593
PspFI	CCCAGC	2 cut(s)	1397, 1408
PspGI	CCWGG	4 cut(s)	997, 1491, 1505, 1593
PspN4I	GGNNCC	6 cut(s)	17, 501, 623, 1156, 1202, 1694
PspPI	GGNCC	4 cut(s)	16, 622, 1200, 1818
PstNI	CAGNNNCTG	1 cut(s)	1091
PsuI	RGATCY	6 cut(s)	499, 613, 731, 787, 824, 1192
PvuII	CAGCTG	2 cut(s)	1088, 1340
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	485
SacI	GAGCTC	3 cut(s)	246, 1101, 1851
SaqAI	TTAA	5 cut(s)	330, 423, 519, 651, 1230
Sau96I	GGNCC	4 cut(s)	16, 622, 1200, 1818
SchI	GAGTC	8 cut(s)	47, 49, 151, 218, 449, 581, 934, 1432
ScrFI	CCNGG	6 cut(s)	24, 999, 1493, 1507, 1595, 1697
SduI	GDGCHC	4 cut(s)	246, 1101, 1212, 1851
SfaNI	GCATC	6 cut(s)	627, 838, 992, 1138, 1447, 1546
SfcI	CTRYAG	2 cut(s)	1362, 1464
SinI	GGWCC	3 cut(s)	16, 622, 1200
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	1550, 1638
SmoI	CTYRAG	2 cut(s)	1550, 1638
SpeI	ACTAGT	1 cut(s)	406
SsiI	CCGC	4 cut(s)	609, 1102, 1535, 1559
SspMI	CTAG	7 cut(s)	407, 464, 617, 773, 1326, 1757, 1875
SstI	GAGCTC	3 cut(s)	246, 1101, 1851
StyD4I	CCNGG	6 cut(s)	22, 997, 1491, 1505, 1593, 1695
TaaI	ACNGT	2 cut(s)	328, 1019
TaiI	ACGT	2 cut(s)	96, 709
TaqI	TCGA	2 cut(s)	1484, 1863
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	1037, 1860
Tru1I	TTAA	5 cut(s)	330, 423, 519, 651, 1230
Tru9I	TTAA	5 cut(s)	330, 423, 519, 651, 1230
TscAI	CASTG	3 cut(s)	219, 1012, 1816
TseFI	GTSAC	6 cut(s)	170, 210, 573, 673, 707, 1528
Tsp45I	GTSAC	6 cut(s)	170, 210, 573, 673, 707, 1528
TspDTI	ATGAA	5 cut(s)	603, 797, 834, 1089, 1593
TspGWI	ACGGA	1 cut(s)	1705
TspRI	CASTG	3 cut(s)	219, 1012, 1816
Van91I	CCANNNNNTGG	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	16, 622, 1200
XapI	RAATTY	2 cut(s)	115, 354
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	7 cut(s)	407, 464, 617, 773, 1326, 1757, 1875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.