Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011054

Physical Location & Seq

Genomic Coordinates Reverse (-)

40825858 .. 40829667

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG272700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGACACTCTTGACTCACAACTAGAGATGGATTTAGTCATAGCAGTGAGAGATAAGGATCCTGATACTGCAATAATTAAGAGACTTTCGGAGAAGCTGCACCTCAGAACCATCAACGATCTGAAACAAGAGTCACTTGCTTTCCATGAATTGGTTATAGCAAGTGGCGGAGATCTAGGGGACCAGTTTGAACAGATGCAAGCTCTTTTTAAGAAGCTAAATGACTATGTGGTGACAGAAAACCCAGAAATTGACAGCTCTGAACGTGATAAGGGCACGATCAAGCACAGATCTCCAGTTATCCCAGATGATTTCCGGTGTCCAATATCTCTAGAATTGATGAAAGATCCTGTCATTGTATCTACTGGACAGACATATGAAAGATCCTGTATTCAGAAGTGGTTGGATGCTGGACACAAAACCTGTCCCAAAACACAGCAGACACTATTGCACACGGCCATAACCCCAAACTATGTTCTGAAGAGTCTAATTGCTTTGTGGTGCGAGAGCAATGGCGTTGAGCTACCCAAAAAGCAAGGGAATAAAAGCAAAAAACCAGGATGCAGTGTTTCAGACTGTGATCGTGCTTCTATTGATTCTTTATTAGAAAAATTGGCAAAGGGGAGTTCAGATGAACAAAGAGCAGCTGCTGGAGAGCTCCGCTTGCTGGCAAAAAGGAATGCAGATAATAGAGTGTGTATTGCTGATGCAGGAGCCATCCCACTCCTTGTTGAGCTTCTATCCTCCCCAGATCCTCGGACCCAAGAGCACGCCGTTACAGCACTCCTTAACCTTTCAATAAATGAGAGTAACAAGGGAGCAATTGTCATTGCAGGAGCTATACCTGATATAGTAGAAGTTTTGAAAAATGGTAGCATGGAGGCTAGAGAAAATGCAGCTGCAACCCTTTTCAGCTTGTCTGTAGTAGATGAGAACAAGGTGCAAATTGGAGCTGCTGGGGCTATCCCAGCCCTTATAAAATTGCTCTGCGAGGGGACTCCAAGAGGAAAAAAGGATGCTGCTACAGCTATATTCAATCTTTCGATCTACCAGGGAAACAAGGCCAGGGCTGTAAGGGCTGGTATTGTGACCCCGCTGATGAGATTGCTCAAGGATGCGGGAAGTGGGATGGTGGATGAAGCTCTTGCAATCCTGGCCATTCTGGCGAGCCATCATGAAGGAAAGGTGGCAATTGCTCAAGCTGAGGCAATCCCAGTTTTGGTGGAAGTTATACGAACTGGTTTCCCACGGAACCGGGAGAATGCTGCTGCTGTGTTATGGTCATTATGCACAGGTGATTTGCAGCAGTTGAAACTAGCAAGGGAACTTGGTGCAGAAGAAGCATTGCAGGAACTTTCAGAAAATGGCACTGATAGGGCCAAGAGAAAAGCTGGAAATGTTTTAGAGCTCCTTCAACGAATCGATGACCCTGCTAGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

480

Amino Acids

51.92

Weight (kDa)

5.67

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	101 - 171	1.4e-21	U-box domain
ARM_ARMC5	PF24768	180 - 372	3.2e-10	ARMC5
ARM_PUB	PF25598	198 - 472	3.4e-24	Plant U-box protein ARM repeat region
Arm	PF00514	227 - 266	1.4e-11	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	264 - 431	2.3e-09	ARMC5
Arm	PF00514	310 - 348	1.2e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54850
fragaria_vesca	FvH4_7g18840 FvH4_7g18840 FvH4_7g18840
malus_domestica	MD01G1103500.v1.1 MD07G1170400.v1.1
prunus_persica	Prupe.2G209300_v2.0.a1
pyrus_communis	pycom01g13000 pycom07g16430
rosa_chinensis	RchiOBHm_Chr1g0362651
rosa_laevigata	RLG00000027631
rosa_multiflora	Rmu_sc0000046.1_g000030
rosa_roxburghii	Rroxscaffold_4G00293880
rosa_rugosa	Rorug01G0300300.1 Rorug01G0300400
rosa_samantha	Rh1AG308900 Rh1BG272700 Rh1CG290000 Rh1DG303200
rosa_wichuraiana	Rw1G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	977
AccB7I	CCANNNNNTGG	1 cut(s)	151
AciI	CCGC	4 cut(s)	168, 661, 1094, 1118
AclWI	GGATC	5 cut(s)	53, 66, 341, 378, 746
AcoI	YGGCCR	2 cut(s)	456, 1155
AcuI	CTGAAG	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	151, 667, 1219
AgsI	TTSAA	6 cut(s)	191, 798, 865, 1036, 1312, 1415
AjnI	CCWGG	4 cut(s)	556, 1050, 1064, 1152
Alw21I	GWGCWC	3 cut(s)	660, 771, 1410
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	5 cut(s)	53, 66, 341, 378, 746
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	4 cut(s)	456, 1062, 1155, 1377
AspS9I	GGNCC	3 cut(s)	181, 759, 1377
AsuC2I	CCSGG	1 cut(s)	1256
AsuHPI	GGTGA	2 cut(s)	244, 1307
AvaII	GGWCC	2 cut(s)	181, 759
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	1157
BamHI	GGATCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	660, 1410
Bbv12I	GWGCWC	3 cut(s)	660, 771, 1410
BbvCI	CCTCAGC	1 cut(s)	1203
BccI	CCATC	5 cut(s)	22, 119, 725, 1123, 1179
BceAI	ACGGC	2 cut(s)	471, 758
BcgI	CGANNNNNNTGC	1 cut(s)	1412
BciT130I	CCWGG	4 cut(s)	558, 1052, 1066, 1154
BcnI	CCSGG	1 cut(s)	1256
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	6 cut(s)	23, 176, 332, 885, 1316, 1434
BfmI	CTRYAG	2 cut(s)	921, 1023
BglI	GCCNNNNNGGC	1 cut(s)	1163
BglII	AGATCT	2 cut(s)	172, 290
Bme1390I	CCNGG	5 cut(s)	558, 1052, 1066, 1154, 1256
Bme18I	GGWCC	2 cut(s)	181, 759
BmgT120I	GGNCC	3 cut(s)	181, 759, 1377
BmiI	GGNNCC	5 cut(s)	60, 182, 715, 761, 1253
BmrFI	CCNGG	5 cut(s)	558, 1052, 1066, 1154, 1256
BmrI	ACTGGG	1 cut(s)	1208
BmsI	GCATC	6 cut(s)	186, 397, 551, 697, 1006, 1105
BmuI	ACTGGG	1 cut(s)	1208
BpmI	CTGGAG	2 cut(s)	279, 672
Bpu10I	CCTNAGC	1 cut(s)	1203
BpuEI	CTTGAG	2 cut(s)	1094, 1182
BpuMI	CCSGG	1 cut(s)	1256
Bsa29I	ATCGAT	1 cut(s)	1422
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	4 cut(s)	755, 1051, 1065, 1247
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 667, 1219
Bse1I	ACTGG	5 cut(s)	184, 296, 370, 1214, 1243
Bse3DI	GCAATG	3 cut(s)	517, 828, 1343
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	558, 1052, 1066, 1154
BseCI	ATCGAT	1 cut(s)	1422
BseDI	CCNNGG	4 cut(s)	755, 1051, 1065, 1247
BseGI	GGATG	7 cut(s)	412, 566, 717, 1021, 1120, 1134, 1141
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	151, 667, 1219
BseMI	GCAATG	3 cut(s)	517, 828, 1343
BseMII	CTCAG	2 cut(s)	118, 1194
BseNI	ACTGG	5 cut(s)	184, 296, 370, 1214, 1243
BseSI	GKGCMC	1 cut(s)	278
BseYI	CCCAGC	2 cut(s)	956, 967
BsgI	GTGCAG	2 cut(s)	83, 1353
BshFI	GGCC	4 cut(s)	458, 1064, 1157, 1379
BshVI	ATCGAT	1 cut(s)	1422
BsiHKAI	GWGCWC	3 cut(s)	660, 771, 1410
BsiSI	CCGG	2 cut(s)	316, 1255
BslFI	GGGAC	3 cut(s)	194, 411, 1009
BslI	CCNNNNNNNGG	3 cut(s)	151, 667, 1219
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	3 cut(s)	194, 411, 1009
BsmI	GAATGC	2 cut(s)	685, 1267
BsnI	GGCC	4 cut(s)	458, 1064, 1157, 1379
Bsp1286I	GDGCHC	4 cut(s)	278, 660, 771, 1410
BspACI	CCGC	4 cut(s)	168, 661, 1094, 1118
BspANI	GGCC	4 cut(s)	458, 1064, 1157, 1379
BspCNI	CTCAG	2 cut(s)	117, 1195
BspDI	ATCGAT	1 cut(s)	1422
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	5 cut(s)	60, 182, 715, 761, 1253
BspPI	GGATC	5 cut(s)	53, 66, 341, 378, 746
BsrDI	GCAATG	3 cut(s)	517, 828, 1343
BsrI	ACTGG	5 cut(s)	184, 296, 370, 1214, 1243
BssECI	CCNNGG	4 cut(s)	755, 1051, 1065, 1247
Bst2UI	CCWGG	4 cut(s)	558, 1052, 1066, 1154
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	5 cut(s)	201, 665, 669, 771, 1168
BstDEI	CTNAG	2 cut(s)	104, 1203
BstDSI	CCRYGG	1 cut(s)	1247
BstF5I	GGATG	7 cut(s)	412, 566, 717, 1021, 1120, 1134, 1141
BstMAI	GTCTC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	9 cut(s)	664, 779, 959, 968, 1025, 1076, 1154, 1163, 1340
BstNI	CCWGG	4 cut(s)	558, 1052, 1066, 1154
BstSCI	CCNGG	5 cut(s)	556, 1050, 1064, 1152, 1254
BstSFI	CTRYAG	2 cut(s)	921, 1023
BstSLI	GKGCMC	1 cut(s)	278
BstX2I	RGATCY	6 cut(s)	58, 172, 290, 346, 383, 751
BstYI	RGATCY	6 cut(s)	58, 172, 290, 346, 383, 751
Bsu15I	ATCGAT	1 cut(s)	1422
BsuRI	GGCC	4 cut(s)	458, 1064, 1157, 1379
BsuTUI	ATCGAT	1 cut(s)	1422
BtgI	CCRYGG	1 cut(s)	1247
BtsCI	GGATG	7 cut(s)	412, 566, 717, 1021, 1120, 1134, 1141
BtsI	GCAGTG	2 cut(s)	51, 571
BtsIMutI	CAGTG	3 cut(s)	51, 571, 1368
Cac8I	GCNNGC	5 cut(s)	201, 665, 669, 771, 1168
CaiI	CAGNNNCTG	1 cut(s)	650
CciI	TCATGA	1 cut(s)	1174
Cfr13I	GGNCC	3 cut(s)	181, 759, 1377
ClaI	ATCGAT	1 cut(s)	1422
CviAII	CATG	3 cut(s)	146, 877, 1175
DdeI	CTNAG	2 cut(s)	104, 1203
EaeI	YGGCCR	2 cut(s)	456, 1155
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	1 cut(s)	183
Ecl136II	GAGCTC	2 cut(s)	658, 1408
Eco24I	GRGCYC	2 cut(s)	660, 1410
Eco47I	GGWCC	2 cut(s)	181, 759
Eco53kI	GAGCTC	2 cut(s)	658, 1408
Eco57I	CTGAAG	1 cut(s)	500
EcoICRI	GAGCTC	2 cut(s)	658, 1408
EcoRII	CCWGG	4 cut(s)	556, 1050, 1064, 1152
EcoT38I	GRGCYC	2 cut(s)	660, 1410
FaeI	CATG	3 cut(s)	149, 880, 1178
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	3 cut(s)	194, 411, 1009
FatI	CATG	3 cut(s)	145, 876, 1174
FauI	CCCGC	2 cut(s)	1101, 1111
FauNDI	CATATG	1 cut(s)	376
FokI	GGATG	7 cut(s)	419, 573, 704, 1028, 1127, 1141, 1148
FriOI	GRGCYC	2 cut(s)	660, 1410
FspBI	CTAG	6 cut(s)	23, 176, 332, 885, 1316, 1434
GsaI	CCCAGC	2 cut(s)	960, 971
GsuI	CTGGAG	2 cut(s)	279, 672
HaeIII	GGCC	4 cut(s)	458, 1064, 1157, 1379
HapII	CCGG	2 cut(s)	316, 1255
Hin1II	CATG	3 cut(s)	149, 880, 1178
HinfI	GANTC	6 cut(s)	14, 131, 484, 596, 997, 1419
HpaII	CCGG	2 cut(s)	316, 1255
HphI	GGTGA	2 cut(s)	244, 1307
Hpy188III	TCNNGA	4 cut(s)	11, 62, 332, 1175
HpyAV	CCTTC	2 cut(s)	1172, 1421
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	9 cut(s)	664, 779, 959, 968, 1025, 1076, 1154, 1163, 1340
HpyF3I	CTNAG	2 cut(s)	104, 1203
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	149, 880, 1178
LmnI	GCTCC	6 cut(s)	663, 713, 818, 836, 950, 1413
LweI	GCATC	6 cut(s)	186, 397, 551, 697, 1006, 1105
MaeI	CTAG	6 cut(s)	23, 176, 332, 885, 1316, 1434
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	5 cut(s)	132, 232, 775, 809, 1087
MboII	GAAGA	2 cut(s)	493, 1349
MfeI	CAATTG	2 cut(s)	822, 1191
MflI	RGATCY	6 cut(s)	58, 172, 290, 346, 383, 751
MhlI	GDGCHC	4 cut(s)	278, 660, 771, 1410
MlsI	TGGCCA	1 cut(s)	1157
MluNI	TGGCCA	1 cut(s)	1157
MlyI	GAGTC	4 cut(s)	8, 140, 493, 991
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	7 cut(s)	113, 754, 765, 874, 985, 998, 1198
Mox20I	TGGCCA	1 cut(s)	1157
MscI	TGGCCA	1 cut(s)	1157
MseI	TTAA	3 cut(s)	78, 210, 789
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	1157
MspA1I	CMGCKG	3 cut(s)	647, 899, 1096
MspI	CCGG	2 cut(s)	316, 1255
MspR9I	CCNGG	5 cut(s)	558, 1052, 1066, 1154, 1256
MunI	CAATTG	2 cut(s)	822, 1191
Mva1269I	GAATGC	2 cut(s)	685, 1267
MvaI	CCWGG	4 cut(s)	558, 1052, 1066, 1154
MwoI	GCNNNNNNNGC	9 cut(s)	664, 779, 959, 968, 1025, 1076, 1154, 1163, 1340
NciI	CCSGG	1 cut(s)	1256
NdeI	CATATG	1 cut(s)	376
NlaIII	CATG	3 cut(s)	149, 880, 1178
NlaIV	GGNNCC	5 cut(s)	60, 182, 715, 761, 1253
NmuCI	GTSAC	3 cut(s)	132, 232, 1087
PagI	TCATGA	1 cut(s)	1174
PctI	GAATGC	2 cut(s)	685, 1267
PfeI	GAWTC	2 cut(s)	596, 1419
PflMI	CCANNNNNTGG	1 cut(s)	151
PleI	GAGTC	4 cut(s)	8, 139, 492, 991
PpsI	GAGTC	4 cut(s)	8, 139, 492, 991
PsiI	TTATAA	1 cut(s)	977
Psp124BI	GAGCTC	2 cut(s)	660, 1410
Psp6I	CCWGG	4 cut(s)	556, 1050, 1064, 1152
PspFI	CCCAGC	2 cut(s)	956, 967
PspGI	CCWGG	4 cut(s)	556, 1050, 1064, 1152
PspN4I	GGNNCC	5 cut(s)	60, 182, 715, 761, 1253
PspPI	GGNCC	3 cut(s)	181, 759, 1377
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	6 cut(s)	58, 172, 290, 346, 383, 751
PvuII	CAGCTG	2 cut(s)	647, 899
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	2 cut(s)	660, 1410
SaqAI	TTAA	3 cut(s)	78, 210, 789
Sau96I	GGNCC	3 cut(s)	181, 759, 1377
SchI	GAGTC	4 cut(s)	8, 140, 493, 991
ScrFI	CCNGG	5 cut(s)	558, 1052, 1066, 1154, 1256
SduI	GDGCHC	4 cut(s)	278, 660, 771, 1410
SfaNI	GCATC	6 cut(s)	186, 397, 551, 697, 1006, 1105
SfcI	CTRYAG	2 cut(s)	921, 1023
SinI	GGWCC	2 cut(s)	181, 759
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	1109, 1197
SmoI	CTYRAG	2 cut(s)	1109, 1197
SsiI	CCGC	4 cut(s)	168, 661, 1094, 1118
SspMI	CTAG	6 cut(s)	23, 176, 332, 885, 1316, 1434
SstI	GAGCTC	2 cut(s)	660, 1410
StyD4I	CCNGG	5 cut(s)	556, 1050, 1064, 1152, 1254
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	1043, 1422
TfiI	GAWTC	2 cut(s)	596, 1419
Tru1I	TTAA	3 cut(s)	78, 210, 789
Tru9I	TTAA	3 cut(s)	78, 210, 789
TscAI	CASTG	3 cut(s)	51, 571, 1375
TseFI	GTSAC	3 cut(s)	132, 232, 1087
Tsp45I	GTSAC	3 cut(s)	132, 232, 1087
TspDTI	ATGAA	6 cut(s)	162, 356, 393, 648, 1152, 1191
TspGWI	ACGGA	1 cut(s)	1264
TspRI	CASTG	3 cut(s)	51, 571, 1375
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	181, 759
XbaI	TCTAGA	1 cut(s)	331
XspI	CTAG	6 cut(s)	23, 176, 332, 885, 1316, 1434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.