Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014911

Physical Location & Seq

Genomic Coordinates Reverse (-)

549592 .. 553039

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3072 bp

ATGGCGTCTTCATCAAACAAGAAAACACTGCCTAACTCACCATCATCGGTCGGCCGACCACCGTCATCGTCTGTCAAATTTGCTCGCCGGACATCGAGCGGGCGTATCATGAGCTTGTCCCGGGACGATGACCTGGACATGAGCGGAGAAATGTCGGGTGAAAATGACTACATCAATTACACGGTGATGATGCCGCCGACGCCGGACAACCAGCCTGGAGAGGAAGCCAAGGCCGACAGTGCTGCGGGGACTTACGCGGCCTCACGGTTCGGGACAGAGCCGAGACGACGGAATGATGGTGGCGGCGGCGGCGAAGCGTCGAAGATGGATAGGAGAATGTCTGTGATGAGCTCATCTAATAACAAATCAATATTGTTGAGAAGCCAAACTGGGGACTTTGATCACAACCGTTGGTTATTCGAGACAAAGGGAACGTACGGCATCGGAAACGCGTTTTGGTCGCAGAAGGACGAGGACTCGTATAATGGGCCCACAGGCGATATGAACATGCAGGACTTTATTGACGACAAGCCATGGAAGCCACTCACCAGGAAGATTTCAGTTCCTCCTGCTATTCTTAGCCCTTACCGGTTATTGGTGGTGATTCGTCTGATAGTACTTTTCTTTTTCCTAGTGTGGCGAGTACAGAATCCAAACCCAGATGCAATGTGGCTATGGGGGATTTCCATAGTTTGTGAGATTTGGTTTGCGTTCTCATGGCTACTAGACATACTTCCCAAAATGAATCCCATAAACCGTGCCACAGACTTGTCTGCCCTACATGACAAGTTTGAGCAGCCCTCGCCGCAAAACCCCACCGGAAGGTCTGACCTGCCTGGCGTCGATGTATTCGTGTCCACTGCCGATGCAGATAAGGAACCGCCTCTTGTCACGGCCAATACCATGCTCTCCATCCTTGCTGTTGATTACCCTGTGGAAAAACTTTCAGCCTACATTTCAGATGATGGCGGTGCCATTCTCACATTTGAGGCCATGGCCGAGGCTGTAGCCTTTGCTGAGGTTTGGGTACCCTTTTGCCGAAAACACAACATAGAGCCAAGGAATCCAGACAGTTACTTCAACAGCAAGGTAGACCCAACCAAGAACAAGAAGCGGCCCGATTTTGTCAAGGACAGGCGTTGGATCAAGAGAGAGTATGATGAGTTCAAGGTCAGGATCAACGGTCTGCCTGATGTAATACGTAAGCGATGTGAAATGTATAACTGTCGAGAGGAAAGGAAGCTTACAAAGGAAACAAGTACTGGTGGATCAGCTCGATCAATAGAGCCACTGGGTGATAATGCTGGTGATGAGCCAGGTTCCACAGTCCCCAAGGCCACGTGGATGGCCGACGGAACACACTGGCCGGGGACATGGCTGGAACCTTGTGCTGATCATAAAAAGGAGACCATGCTGGCATCTTACAGGGAAAAGCGTCCTGGCTACGACCACAACAAGAAGGCAGGAGCCATGAATGCCATGGTTAGAGCATCAGCAGTATTGTCTAACGGCCCATTTATACTGAATCTCGACTGTGACCATTATATCTATAACTCCAAGGCTATAAGGGAAGGAATGTGCTTCATGATGGACCGTGGAGGAGATCGCATTTGCTACATACAGTTCCCTCAGAGATTCGAAGGGATCGATCCATCTGATCGTTATGCTAATCATAACACAGTCTTCTTTGATGGAAATATGAGAGCCTTGGACGGTCTGCAAGGGCCAGTGTATGTGGGAACTGGGTGCATGTTCAGGCGTTTTGCACTCTACGGCTTCCACCCGCCAAGGGCGCATGAGTACCTGGGGGTCTTTGGGCACAAAAAGGCTCCAGCACCACAATATCAGACTATGGATTCTGTAAGATTACGGCCTTCTGAAGAAGGAGACGAAGCAGCGCCTCTAGCAGAACACCCCGACTTGGGACTTCCAATCAAGTTTGGAAATTCTCAAGTATTCACTGATTCCATAGCTGTTGCTGAGTTTCAAGGACGGCCTCTTGCTGATCATGAAACAGTCAAGAATGGCCGCCCTCCTGGGGCCCTGCTAGAACCACGTCCCCCACTCGATGCACCCACTGTTGCCGAAGCGGTTGCTGTTATTTCCTGCTGGTTTGAGGAAAACACCGAATGGGGAGACAGGATAGGTTGGATTTATGGATCAGTGACAGAGGATGTGGTGACAGGTTACCGAATGCACAATCGTGGATGGCGATCTGTGTATTGCATAACCAAGCGTGACGCATTCCGCGGCACTGCACCTATCAACCTGACAGACAGATTGCACCAGGTGCTTCGATGGGCCACTGGTTCAGTGGAAATCTTCTACTCTAGAAACAATGCATTCCTGGCATGCCGACGCCTCAAGTTCCTACAGCGTATTGCGTACCTCAACGTCGGCATTTATCCCTTCACCTCCGTCTTTCTGGTGGTTTATTGTTTCCTCCCTGCGCTCTGCCTCTTTTCAGGACAATTCATAGTGGCAGGTCTAAATATTCCCTTCCTTTCCTACCTCCTTACCATCACGATATGTCTCATTCTTATCTCCATACTTGAAGTCAGATGGTCCGGCATTGGTCTTGAGGAATGGTGGCGTAATGAGCAGTTTTGGTGCATTGGTGGAACCAGTGCTCACCTTGCCGCTGTCATCCAGGGACTCCTCAAAGTCATAGCGGGCATCGAAATTTCCTTCACCTTAACCTCCAAGTCTGCCGGCGATGACGATGATGACATTTACGCTGATCTTTACATAGTCAAATGGACCAGTCTCTTCATCATGCCAATATTAATCATAGTTACCAACATTATTGCAGCTGTCATTGGAATATCAAGGACCTTATACGCTGTCATACCCCAATGGAATAAGCTATTCGGAGGGCTCTTCTTCAGTTTTTGGGTGTTGGCTCACATGTACCCATTTATGAAAGGCTTGATGGGAAGGAGAGGAAGGATACCAACTATCGTATATGTATGGGCGGGACTGCTCGCTATCACAGTGTCTTTGCTTTGGCTGGCACTCAATCCTCCTGGCAGTGGTTTGTCTGGTGCTGGTGGTGGAGACATAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

1023

Amino Acids

114.5

Weight (kDa)

6.99

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	281 - 1009	0.0	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33100 AT2G33100
fragaria_vesca	FvH4_4g00350
malus_domestica	MD04G1004000.v1.1
prunus_persica	Prupe.1G003500_v2.0.a1
pyrus_communis	pycom04g00410
rosa_chinensis	RchiOBHm_Chr4g0385221
rosa_laevigata	RLG00000010247
rosa_multiflora	Rmu_sc0008734.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333120
rosa_rugosa	Rorug03G0300000
rosa_samantha	Rh4AG003400 Rh4BG002800 Rh4CG003900 Rh4DG003100
rosa_wichuraiana	Rw4G000560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	840, 2474
Acc65I	GGTACC	1 cut(s)	1027
AccB1I	GGYRCC	2 cut(s)	971, 1027
AccBSI	CCGCTC	2 cut(s)	99, 144
AccI	GTMKAC	1 cut(s)	1092
AccII	CGCG	3 cut(s)	257, 452, 2250
AclWI	GGATC	6 cut(s)	1151, 1184, 1276, 1643, 1652, 2167
AcoI	YGGCCR	6 cut(s)	52, 894, 996, 1347, 1364, 2026
AcsI	RAATTY	3 cut(s)	77, 1945, 2682
AcuI	CTGAAG	2 cut(s)	1899, 2869
AcvI	CACGTG	1 cut(s)	1341
AcyI	GRCGYC	4 cut(s)	5, 200, 840, 2359
AdeI	CACNNNGTG	2 cut(s)	1295, 2290
AfaI	GTAC	8 cut(s)	437, 618, 645, 1029, 1261, 1802, 2387, 2912
AfiI	CCNNNNNNNGG	8 cut(s)	391, 595, 822, 1789, 1921, 1922, 2038, 3032
AflIII	ACRYGT	2 cut(s)	450, 2907
AgeI	ACCGGT	1 cut(s)	588
AgsI	TTSAA	4 cut(s)	1081, 1168, 1988, 2555
AjiI	CACGTC	1 cut(s)	2057
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AleI	CACNNNNGTG	1 cut(s)	2202
AluBI	AGCT	7 cut(s)	114, 351, 1243, 1274, 1973, 2813, 2866
AluI	AGCT	7 cut(s)	114, 351, 1243, 1274, 1973, 2813, 2866
Alw21I	GWGCWC	2 cut(s)	353, 2632
Alw26I	GTCTC	8 cut(s)	277, 416, 1400, 1881, 2130, 2537, 2771, 3051
AlwI	GGATC	6 cut(s)	1151, 1184, 1276, 1643, 1652, 2167
Ama87I	CYCGRG	1 cut(s)	120
ApaI	GGGCCC	2 cut(s)	492, 2044
ApeKI	GCWGC	4 cut(s)	242, 796, 1895, 2810
ApoI	RAATTY	3 cut(s)	77, 1945, 2682
AseI	ATTAAT	1 cut(s)	2786
AsiGI	ACCGGT	1 cut(s)	588
Asp718I	GGTACC	1 cut(s)	1027
AspLEI	GCGC	3 cut(s)	1795, 1900, 2452
AsuC2I	CCSGG	3 cut(s)	121, 122, 1368
AsuII	TTCGAA	1 cut(s)	1638
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	4 cut(s)	1591, 2565, 2760, 2832
BaeGI	GKGCMC	3 cut(s)	492, 1821, 2044
BanI	GGYRCC	2 cut(s)	971, 1027
BanII	GRGCYC	4 cut(s)	353, 492, 2044, 2880
BbrPI	CACGTG	1 cut(s)	1341
BbsI	GAAGAC	1 cut(s)	1675
Bbv12I	GWGCWC	2 cut(s)	353, 2632
BbvCI	CCTCAGC	1 cut(s)	1017
BbvI	GCAGC	4 cut(s)	229, 808, 1907, 2822
BceAI	ACGGC	6 cut(s)	454, 909, 1525, 1789, 1886, 2009
BcgI	CGANNNNNNTGC	4 cut(s)	224, 258, 2075, 2109
BciVI	GTATCC	1 cut(s)	2943
BclI	TGATCA	3 cut(s)	400, 1393, 2005
BcnI	CCSGG	3 cut(s)	121, 122, 1368
BcoDI	GTCTC	8 cut(s)	277, 416, 1400, 1881, 2130, 2537, 2771, 3051
BfaI	CTAG	5 cut(s)	632, 725, 1904, 2048, 2331
BfmI	CTRYAG	2 cut(s)	1005, 2372
BfoI	RGCGCY	1 cut(s)	1901
BfuAI	ACCTGC	2 cut(s)	840, 2474
BfuI	GTATCC	1 cut(s)	2943
BmcAI	AGTACT	2 cut(s)	618, 1261
Bme18I	GGWCC	4 cut(s)	1591, 2565, 2760, 2832
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	2057
BmrI	ACTGGG	3 cut(s)	399, 1301, 1752
BmsI	GCATC	8 cut(s)	180, 450, 652, 856, 1427, 1499, 2059, 2685
BmuI	ACTGGG	3 cut(s)	399, 1301, 1752
BoxI	GACNNNNGTC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	1675
BplI	GAGNNNNNCTC	2 cut(s)	785, 817
BpmI	CTGGAG	2 cut(s)	237, 1815
Bpu10I	CCTNAGC	1 cut(s)	1017
Bpu14I	TTCGAA	1 cut(s)	1638
BpuEI	CTTGAG	3 cut(s)	1935, 2348, 2600
BpuMI	CCSGG	3 cut(s)	121, 122, 1368
Bsa29I	ATCGAT	1 cut(s)	1647
BsaAI	YACGTR	2 cut(s)	1202, 1341
BsaBI	GATNNNNATC	1 cut(s)	2212
BsaHI	GRCGYC	4 cut(s)	5, 200, 840, 2359
BsaI	GGTCTC	1 cut(s)	1400
BsaWI	WCCGGW	2 cut(s)	588, 818
Bsc4I	CCNNNNNNNGG	8 cut(s)	391, 595, 822, 1789, 1921, 1922, 2038, 3032
Bse118I	RCCGGY	2 cut(s)	588, 2711
Bse1I	ACTGG	9 cut(s)	394, 1267, 1296, 1367, 1727, 1747, 2311, 2625, 2763
Bse3DI	GCAATG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	2212
BseCI	ATCGAT	1 cut(s)	1647
BseGI	GGATG	5 cut(s)	912, 1350, 2179, 2213, 2646
BseJI	GATNNNNATC	1 cut(s)	2212
BseLI	CCNNNNNNNGG	8 cut(s)	391, 595, 822, 1789, 1921, 1922, 2038, 3032
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	3 cut(s)	1008, 1643, 1971
BseNI	ACTGG	9 cut(s)	394, 1267, 1296, 1367, 1727, 1747, 2311, 2625, 2763
BseRI	GAGGAG	2 cut(s)	1614, 2648
BseSI	GKGCMC	3 cut(s)	492, 1821, 2044
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	4 cut(s)	229, 808, 1907, 2822
BsgI	GTGCAG	1 cut(s)	2241
Bsh1236I	CGCG	3 cut(s)	257, 452, 2250
Bsh1285I	CGRYCG	2 cut(s)	51, 55
BshNI	GGYRCC	2 cut(s)	971, 1027
BshTI	ACCGGT	1 cut(s)	588
BshVI	ATCGAT	1 cut(s)	1647
BsiEI	CGRYCG	2 cut(s)	51, 55
BsiHKAI	GWGCWC	2 cut(s)	353, 2632
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	8 cut(s)	88, 121, 203, 589, 819, 1367, 2568, 2712
BsiWI	CGTACG	1 cut(s)	435
BslI	CCNNNNNNNGG	8 cut(s)	391, 595, 822, 1789, 1921, 1922, 2038, 3032
BsmAI	GTCTC	8 cut(s)	277, 416, 1400, 1881, 2130, 2537, 2771, 3051
BsmBI	CGTCTC	2 cut(s)	277, 1881
BsmI	GAATGC	4 cut(s)	1480, 2199, 2243, 2342
Bso31I	GGTCTC	1 cut(s)	1400
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	1638
Bsp120I	GGGCCC	2 cut(s)	488, 2040
Bsp1286I	GDGCHC	6 cut(s)	353, 492, 1821, 2044, 2632, 2880
Bsp19I	CCATGG	3 cut(s)	533, 993, 1479
BspCNI	CTCAG	3 cut(s)	1009, 1642, 1972
BspDI	ATCGAT	1 cut(s)	1647
BspFNI	CGCG	3 cut(s)	257, 452, 2250
BspHI	TCATGA	3 cut(s)	108, 1584, 2008
BspMI	ACCTGC	2 cut(s)	840, 2474
BspPI	GGATC	6 cut(s)	1151, 1184, 1276, 1643, 1652, 2167
BspQI	GCTCTTC	1 cut(s)	2885
BspT104I	TTCGAA	1 cut(s)	1638
BspT107I	GGYRCC	2 cut(s)	971, 1027
BspTNI	GGTCTC	1 cut(s)	1400
BsrBI	CCGCTC	2 cut(s)	99, 144
BsrDI	GCAATG	1 cut(s)	672
BsrFI	RCCGGY	2 cut(s)	588, 2711
BsrI	ACTGG	9 cut(s)	394, 1267, 1296, 1367, 1727, 1747, 2311, 2625, 2763
BssAI	RCCGGY	2 cut(s)	588, 2711
BssNI	GRCGYC	4 cut(s)	5, 200, 840, 2359
BssT1I	CCWWGG	9 cut(s)	228, 533, 993, 1058, 1332, 1479, 1557, 1707, 1787
Bst6I	CTCTTC	2 cut(s)	2774, 2885
BstACI	GRCGYC	4 cut(s)	5, 200, 840, 2359
BstAPI	GCANNNNNTGC	1 cut(s)	2290
BstBAI	YACGTR	2 cut(s)	1202, 1341
BstBI	TTCGAA	1 cut(s)	1638
BstC8I	GCNNGC	8 cut(s)	85, 101, 1416, 2353, 2674, 2713, 2985, 3012
BstDEI	CTNAG	4 cut(s)	578, 1017, 1629, 1980
BstDSI	CCRYGG	5 cut(s)	533, 993, 1479, 1594, 2248
BstEII	GGTNACC	1 cut(s)	2186
BstF5I	GGATG	5 cut(s)	912, 1350, 2179, 2213, 2646
BstFNI	CGCG	3 cut(s)	257, 452, 2250
BstH2I	RGCGCY	1 cut(s)	1901
BstHHI	GCGC	3 cut(s)	1795, 1900, 2452
BstMAI	GTCTC	8 cut(s)	277, 416, 1400, 1881, 2130, 2537, 2771, 3051
BstMCI	CGRYCG	2 cut(s)	51, 55
BstNSI	RCATGY	4 cut(s)	511, 1753, 2355, 2911
BstPAI	GACNNNNGTC	1 cut(s)	61
BstPI	GGTNACC	1 cut(s)	2186
BstSFI	CTRYAG	2 cut(s)	1005, 2372
BstSLI	GKGCMC	3 cut(s)	492, 1821, 2044
BstSNI	TACGTA	1 cut(s)	1202
BstUI	CGCG	3 cut(s)	257, 452, 2250
BstV1I	GCAGC	4 cut(s)	229, 808, 1907, 2822
BstV2I	GAAGAC	1 cut(s)	1675
BstXI	CCANNNNNNTGG	1 cut(s)	1345
BstZI	CGGCCG	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	1647
BsuI	GTATCC	1 cut(s)	2943
BsuTUI	ATCGAT	1 cut(s)	1647
BtgI	CCRYGG	5 cut(s)	533, 993, 1479, 1594, 2248
BtgZI	GCGATG	2 cut(s)	1222, 2730
BtrI	CACGTC	1 cut(s)	2057
BtsCI	GGATG	5 cut(s)	912, 1350, 2179, 2213, 2646
BtsI	GCAGTG	4 cut(s)	26, 858, 2253, 3037
BveI	ACCTGC	2 cut(s)	840, 2474
Cac8I	GCNNGC	8 cut(s)	85, 101, 1416, 2353, 2674, 2713, 2985, 3012
CciI	TCATGA	3 cut(s)	108, 1584, 2008
CfoI	GCGC	3 cut(s)	1795, 1900, 2452
Cfr10I	RCCGGY	2 cut(s)	588, 2711
Cfr42I	CCGCGG	1 cut(s)	2251
Cfr9I	CCCGGG	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	1647
CseI	GACGC	6 cut(s)	208, 306, 829, 1424, 2249, 2367
CsiI	ACCWGGT	1 cut(s)	2286
Csp6I	GTAC	8 cut(s)	436, 617, 644, 1028, 1260, 1801, 2386, 2911
CspAI	ACCGGT	1 cut(s)	588
CviQI	GTAC	8 cut(s)	436, 617, 644, 1028, 1260, 1801, 2386, 2911
DdeI	CTNAG	4 cut(s)	578, 1017, 1629, 1980
DraIII	CACNNNGTG	2 cut(s)	1295, 2290
EaeI	YGGCCR	6 cut(s)	52, 894, 996, 1347, 1364, 2026
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	2774, 2885
EarI	CTCTTC	2 cut(s)	2774, 2885
Ecl136II	GAGCTC	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	1202
Eco130I	CCWWGG	9 cut(s)	228, 533, 993, 1058, 1332, 1479, 1557, 1707, 1787
Eco24I	GRGCYC	4 cut(s)	353, 492, 2044, 2880
Eco31I	GGTCTC	1 cut(s)	1400
Eco47I	GGWCC	4 cut(s)	1591, 2565, 2760, 2832
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	351
Eco57I	CTGAAG	2 cut(s)	1899, 2869
Eco72I	CACGTG	1 cut(s)	1341
Eco88I	CYCGRG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	2186
EcoICRI	GAGCTC	1 cut(s)	351
EcoO109I	RGGNCCY	3 cut(s)	2040, 2041, 2832
EcoO65I	GGTNACC	1 cut(s)	2186
EcoT14I	CCWWGG	9 cut(s)	228, 533, 993, 1058, 1332, 1479, 1557, 1707, 1787
EcoT22I	ATGCAT	1 cut(s)	2344
EcoT38I	GRGCYC	4 cut(s)	353, 492, 2044, 2880
ErhI	CCWWGG	9 cut(s)	228, 533, 993, 1058, 1332, 1479, 1557, 1707, 1787
Esp3I	CGTCTC	2 cut(s)	277, 1881
FauI	CCCGC	5 cut(s)	92, 238, 1791, 2665, 2968
FbaI	TGATCA	3 cut(s)	400, 1393, 2005
FblI	GTMKAC	1 cut(s)	1092
FokI	GGATG	5 cut(s)	899, 1357, 2186, 2220, 2633
FriOI	GRGCYC	4 cut(s)	353, 492, 2044, 2880
FspBI	CTAG	5 cut(s)	632, 725, 1904, 2048, 2331
GlaI	GCGC	3 cut(s)	1794, 1899, 2451
GsuI	CTGGAG	2 cut(s)	237, 1815
HaeII	RGCGCY	1 cut(s)	1901
HapII	CCGG	8 cut(s)	88, 121, 203, 589, 819, 1367, 2568, 2712
HgaI	GACGC	6 cut(s)	208, 306, 829, 1424, 2249, 2367
HhaI	GCGC	3 cut(s)	1795, 1900, 2452
Hin1I	GRCGYC	4 cut(s)	5, 200, 840, 2359
Hin6I	GCGC	3 cut(s)	1793, 1898, 2450
HinP1I	GCGC	3 cut(s)	1793, 1898, 2450
HindIII	AAGCTT	1 cut(s)	1241
HpaII	CCGG	8 cut(s)	88, 121, 203, 589, 819, 1367, 2568, 2712
Hpy166II	GTNNAC	2 cut(s)	858, 1093
Hpy8I	GTNNAC	2 cut(s)	858, 1093
Hpy99I	CGWCG	7 cut(s)	202, 291, 322, 845, 1355, 2361, 2399
HpyCH4IV	ACGT	5 cut(s)	434, 1201, 1340, 2056, 2394
HpyF3I	CTNAG	4 cut(s)	578, 1017, 1629, 1980
HpySE526I	ACGT	5 cut(s)	434, 1201, 1340, 2056, 2394
Hsp92I	GRCGYC	4 cut(s)	5, 200, 840, 2359
HspAI	GCGC	3 cut(s)	1793, 1898, 2450
KpnI	GGTACC	1 cut(s)	1031
KroI	GCCGGC	1 cut(s)	2711
KroNI	GCCGGC	1 cut(s)	2713
Ksp22I	TGATCA	3 cut(s)	400, 1393, 2005
KspI	CCGCGG	1 cut(s)	2251
LguI	GCTCTTC	1 cut(s)	2885
LmnI	GCTCC	2 cut(s)	1466, 1834
Lsp1109I	GCAGC	4 cut(s)	229, 808, 1907, 2822
LweI	GCATC	8 cut(s)	180, 450, 652, 856, 1427, 1499, 2059, 2685
MabI	ACCWGGT	1 cut(s)	2286
MaeI	CTAG	5 cut(s)	632, 725, 1904, 2048, 2331
MaeII	ACGT	5 cut(s)	434, 1201, 1340, 2056, 2394
MaeIII	GTNAC	8 cut(s)	889, 1073, 1535, 2164, 2179, 2186, 2237, 2794
MbiI	CCGCTC	2 cut(s)	99, 144
MboII	GAAGA	8 cut(s)	334, 565, 1675, 1892, 2314, 2761, 2872, 2875
MhlI	GDGCHC	6 cut(s)	353, 492, 1821, 2044, 2632, 2880
MluCI	AATT	5 cut(s)	77, 175, 1945, 2471, 2682
MluI	ACGCGT	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	470, 2649
MmeI	TCCRAC	2 cut(s)	1121, 2129
Mph1103I	ATGCAT	1 cut(s)	2344
MroNI	GCCGGC	1 cut(s)	2711
MseI	TTAA	2 cut(s)	2696, 2786
MslI	CAYNNNNRTG	3 cut(s)	185, 1343, 2202
MspA1I	CMGCKG	3 cut(s)	2250, 2642, 2813
MspI	CCGG	8 cut(s)	88, 121, 203, 589, 819, 1367, 2568, 2712
Mva1269I	GAATGC	4 cut(s)	1480, 2199, 2243, 2342
MvnI	CGCG	3 cut(s)	257, 452, 2250
NaeI	GCCGGC	1 cut(s)	2713
NciI	CCSGG	3 cut(s)	121, 122, 1368
NcoI	CCATGG	3 cut(s)	533, 993, 1479
NgoMIV	GCCGGC	1 cut(s)	2711
NmeAIII	GCCGAG	2 cut(s)	306, 1024
NmuCI	GTSAC	5 cut(s)	889, 1535, 2164, 2179, 2237
NsiI	ATGCAT	1 cut(s)	2344
NspI	RCATGY	4 cut(s)	511, 1753, 2355, 2911
NspV	TTCGAA	1 cut(s)	1638
OliI	CACNNNNGTG	1 cut(s)	2202
PaeI	GCATGC	1 cut(s)	2355
PagI	TCATGA	3 cut(s)	108, 1584, 2008
PciI	ACATGT	1 cut(s)	2907
PciSI	GCTCTTC	1 cut(s)	2885
PcsI	WCGNNNNNNNCGW	3 cut(s)	849, 1644, 2209
PctI	GAATGC	4 cut(s)	1480, 2199, 2243, 2342
PdiI	GCCGGC	1 cut(s)	2713
PfeI	GAWTC	8 cut(s)	604, 649, 745, 1063, 1525, 1635, 1856, 1964
Pfl23II	CGTACG	1 cut(s)	435
PinAI	ACCGGT	1 cut(s)	588
PleI	GAGTC	2 cut(s)	470, 2649
PmaCI	CACGTG	1 cut(s)	1341
PmlI	CACGTG	1 cut(s)	1341
PpsI	GAGTC	2 cut(s)	470, 2649
Ppu21I	YACGTR	2 cut(s)	1202, 1341
PpuMI	RGGWCCY	1 cut(s)	2832
PscI	ACATGT	1 cut(s)	2907
PshAI	GACNNNNGTC	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	2786
Psp124BI	GAGCTC	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	2832
PspCI	CACGTG	1 cut(s)	1341
PspEI	GGTNACC	1 cut(s)	2186
PspLI	CGTACG	1 cut(s)	435
PspOMI	GGGCCC	2 cut(s)	488, 2040
PspPPI	RGGWCCY	1 cut(s)	2832
PsrI	GAACNNNNNNTAC	2 cut(s)	1148, 1180
PvuII	CAGCTG	1 cut(s)	2813
RsaI	GTAC	8 cut(s)	437, 618, 645, 1029, 1261, 1802, 2387, 2912
RsaNI	GTAC	8 cut(s)	436, 617, 644, 1028, 1260, 1801, 2386, 2911
RseI	CAYNNNNRTG	3 cut(s)	185, 1343, 2202
SacI	GAGCTC	1 cut(s)	353
SacII	CCGCGG	1 cut(s)	2251
SapI	GCTCTTC	1 cut(s)	2885
SaqAI	TTAA	2 cut(s)	2696, 2786
ScaI	AGTACT	2 cut(s)	618, 1261
SchI	GAGTC	2 cut(s)	470, 2649
SduI	GDGCHC	6 cut(s)	353, 492, 1821, 2044, 2632, 2880
SexAI	ACCWGGT	1 cut(s)	2286
SfaNI	GCATC	8 cut(s)	180, 450, 652, 856, 1427, 1499, 2059, 2685
SfcI	CTRYAG	2 cut(s)	1005, 2372
Sfr303I	CCGCGG	1 cut(s)	2251
SfuI	TTCGAA	1 cut(s)	1638
SgrBI	CCGCGG	1 cut(s)	2251
SinI	GGWCC	4 cut(s)	1591, 2565, 2760, 2832
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	3 cut(s)	185, 1343, 2202
SmlI	CTYRAG	3 cut(s)	1950, 2363, 2579
SmoI	CTYRAG	3 cut(s)	1950, 2363, 2579
SnaBI	TACGTA	1 cut(s)	1202
SphI	GCATGC	1 cut(s)	2355
Sse9I	AATT	5 cut(s)	77, 175, 1945, 2471, 2682
SspI	AATATT	3 cut(s)	372, 2494, 2784
SspMI	CTAG	5 cut(s)	632, 725, 1904, 2048, 2331
SstI	GAGCTC	1 cut(s)	353
StyI	CCWWGG	9 cut(s)	228, 533, 993, 1058, 1332, 1479, 1557, 1707, 1787
TaiI	ACGT	5 cut(s)	437, 1204, 1343, 2059, 2397
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	5 cut(s)	77, 175, 1945, 2471, 2682
TatI	WGTACW	3 cut(s)	616, 643, 1259
TfiI	GAWTC	8 cut(s)	604, 649, 745, 1063, 1525, 1635, 1856, 1964
Tru1I	TTAA	2 cut(s)	2696, 2786
Tru9I	TTAA	2 cut(s)	2696, 2786
TseFI	GTSAC	5 cut(s)	889, 1535, 2164, 2179, 2237
TseI	GCWGC	4 cut(s)	242, 796, 1895, 2810
Tsp45I	GTSAC	5 cut(s)	889, 1535, 2164, 2179, 2237
TspDTI	ATGAA	8 cut(s)	518, 758, 1487, 1573, 2025, 2464, 2761, 2936
TspGWI	ACGGA	3 cut(s)	304, 1368, 2407
TspMI	CCCGGG	1 cut(s)	120
VpaK11BI	GGWCC	4 cut(s)	1591, 2565, 2760, 2832
VspI	ATTAAT	1 cut(s)	2786
XapI	RAATTY	3 cut(s)	77, 1945, 2682
XbaI	TCTAGA	1 cut(s)	2330
XceI	RCATGY	4 cut(s)	511, 1753, 2355, 2911
XcmI	CCANNNNNNNNNTGG	3 cut(s)	666, 1477, 2311
XmaI	CCCGGG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	1092
XspI	CTAG	5 cut(s)	632, 725, 1904, 2048, 2331
ZrmI	AGTACT	2 cut(s)	618, 1261
Zsp2I	ATGCAT	1 cut(s)	2344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.