Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014911

Physical Location & Seq

Genomic Coordinates Reverse (-)

565532 .. 569666

Gene Structure 4135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3189 bp

ATGGCGTCTTCATCAAACAAGAAAACATTGCCTAACTCACCATCATCCGTCGGCCGGCCACCGTCATCGTCTGTCAAATTTGCTCGCCGGACGTCGAGCGGGCGTGTCATGAGCTTGTCCCGGGACGATGACTTGGACATGAGCGGAGAAATGTCGGGTGAAAATGACTATATCAATTACACGGTGATGATGCCGCCGACGCCGGACAACCAGCCGGGAGAGGAAGCCAAGGCCGACAGTACTGCTGGGACTTACGCGGCCTCACGGTTCGGGACAGAGCCGAGACGACGGAATGATGGTGGCGGCGGCGGCGGCGGCGAAGCGTCGAAGATGGATAGGAGAATGTCGGTCATGAGCTCATCTAATAACAAATCAATATTGTTGAGAAGCCAAACAGGGGACTTTGATCACAACCGTTGGTTATTCGAGACGAAGGGAACGTACGGCATCGGAAACGCGTTTTGGTCGCAGAAGGACGAGGACTCATATAATGGGCCCACAGGCGATATGAACATGCAGGACTTTATTGACGACAAGCCATGGAAGCCACTCACCAGGAAGATTTCAGTTCCTCCTGCTATTCTTAGCCCTTACCGGTTATTGGTGGTGATTCGTCTGATAGTACTTTTCTTTTTCCTAGTGTGGCGAGTACAGAATCCAAACCCAGATGCAATGTGGCTATGGGGGATTTCCATAGTTTGTGAGATTTGGTTTGCGTTCTCATGGCTACTAGACATACTTCCCAAAATGAATCCCATAAACCGTGCCACAGATTTGTCTGCCCTACATGACAAGTTTGAGCAGCCCTCGCCGCAAAATCCCACCGGAAGGTCTGACCTGCCTGGCGTCGATGTATTCGTGTCCACTGCCGATGCAGATAAGGAACCGCCGCTTGTCACAGCCAATACCATGCTCTCCATCCTTGCTGTTGATTACCCTGTGGAAAAACTTTCAGCCTACATTTCAGATGATGGCGGTGCCATTCTCACATTTGAGGCCATGGCCGAGGCTGTAGTCTTTGCTGAGGTCTGGGTACCCTTTTGCCGAAAACACAACATAGAGCCAAGGAATCCAGACAGTTACTTCAACAGCAAGGTAGACCCAACCAAGAACAAGAAGCGGCCCGATTTTGTCAAGGACAGGCGTTGGATCAAGAGAGAGTATGATGAGTTCAAGGTCAGGATCAACGGTCTGCCTGATGTAATACGTAAGCGATGTGAAATGTATAACTGTAGAGAGGAAAGGAAGCTTACAAAGGAAACAAGTACTGGTGGATCAGCTCGATCAATAGAGCCATTGGGTGATAATGCTGGTGATGAGCCAGGTTCCACAGTCCCCAAGGCCACGTGGATGGCCGACGGAACACACTGGCCGGGGACATGGCTGGAACCTTGTGCTGATCATAAAAAGGGAGACCATGCTGGCATCTTACAGGTGATGAGTAAGGTCCCAGATGTGGAGCCCGTAATGGGTTTTCTTGACGAGAAAAAACTAGACTTCACAGGAGTGGACATTCGGGTCCCCATGTTTGCCTATGTGTCCAGGGAAAAGCGTCCTGGCTACGACCACAACAAGAAGGCAGGAGCCATGAATGCCATGGTTAGAGCATCAGCAGTATTGTCTAATGGCCCATTTATACTGAATCTCGACTGTGACCATTATATCTATAACTCCAAGGCTATAAGGGAAGGAATGTGCTTCATGATGGACCGCGGAGGAGATCGCATTTGCTACATACAGTTCCCTCAGAGATTCGAAGGGATCGATCCATCTGATCGTTATGCTAATCATAACACAGTCTTCTTTGATGGAAATATGAGAGCCTTGGACGGTCTGCAAGGGCCAGTGTATGTGGGAACTGGGTGCATGTTCAGGCGTTTTGCACTCTACGGCTTCCACCCGCCAAGGGCGCATGAGTACCTGGGGGTATTTGGCCACAAAAAGGCTCCAGCACCACAATATCAGACTATGGATTCTGTAAGATTACGGCCTTCTGAAGAAGGAGACGAAGCAGCGCCTCTAGCAGAACACCCCGACTTGGGACTTCCAATCAAGTTTGGAAATTCTCAAGTATTCACTGATTCCATAGCTGTTGCTGAGTTTCAAGGACGGCCTCTTGCTGATCATGAAACAGTCAAGAATGGCCGCCCTCCTGGCGCCCTGCTAGAACCACGTCCCCCACTCGATGCACCCACTGTTGCCGAAGCGGTCGCTGTTATTTCCTGCTGGTTTGAGGAAAACACCGAATGGGGAGACAGGATAGGTTGGATTTATGGATCGGTGACAGAGGATGTGGTGACAGGTTACCGAATGCACAATCGTGGATGGCGGTCTGTGTATTGCATAACCAAGCGTGACGCATTCCGCGGCACTGCACCTATCAACCTGACAGACAGATTGCATCAGGTGCTTCGATGGGCCACTGGTTCAGTGGAAATCTTCTACTCTAGAAACAATGCATTCCTGGCATGCCGACGCCTCAAGTTCCTACAGCGTATTGCATACCTCAATGTCGGCATTTATCCCTTCACCTCCGTCTTTCTGGTGGTTTATTGTTTCCTCCCTGCGCTCTGCCTATTTTCAGGACAATTCATAGTGGCAGGTCTAAATATTCCCTTCCTTTCCTACCTCCTTACCATCACGATATGTCTCATTCTTATCTCCATACTTGAAGTCAGATGGTCCGGCATTGGTCTTGAGGAATGGTGGCGTAATGAGCAGTTTTGGTGCATTGGTGGAACCAGTGCTCACCTTGCCGCTGTCATCCAGGGACTCCTCAAAGTCATAGCGGGCATCGAAATTTCCTTCACCTTAACCTCCAAGTCTGCCGGCGATGACGATGATGACATTTACGCTGATCTTTACATAGTCAAATGGACAAGTCTCTTCATCATGCCAATATTAATCATAGTTACCAACATTATGGCAGCTGTCATTGGAATATCAAGGACCTTATACGCTGTCATACCCCAATGGAATAAGCTATTCGGAGGGCTCTTCTTCAGTTTTTGGGTGTTGGCTCACATGTACCCATTTATGAAAGGCTTGATGGGAAGGAGAGGAAGGATACCTACTATCGTATATGTATGGGCGGGATTGCTCGCTATCACAGTGTCTTTGCTTTGGCTGGCACTCAATCCTCCTGGCAGTGGTTTGTCTGGTGCTGGTGGTGGAGATATAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

1062

Amino Acids

118.72

Weight (kDa)

6.68

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	283 - 1048	0.0	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33100 AT2G33100
fragaria_vesca	FvH4_4g00350
malus_domestica	MD04G1004000.v1.1
prunus_persica	Prupe.1G003500_v2.0.a1
pyrus_communis	pycom04g00410
rosa_chinensis	RchiOBHm_Chr4g0385221
rosa_laevigata	RLG00000010247
rosa_multiflora	Rmu_sc0008734.1_g000009
rosa_roxburghii	Rroxscaffold_5G00333120
rosa_rugosa	Rorug03G0300000
rosa_samantha	Rh4AG003400 Rh4BG002800 Rh4CG003900 Rh4DG003100
rosa_wichuraiana	Rw4G000560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1517
AatII	GACGTC	1 cut(s)	95
Acc36I	ACCTGC	2 cut(s)	846, 2591
Acc65I	GGTACC	1 cut(s)	1033
AccB1I	GGYRCC	3 cut(s)	977, 1033, 2156
AccBSI	CCGCTC	2 cut(s)	99, 144
AccI	GTMKAC	1 cut(s)	1098
AccII	CGCG	4 cut(s)	257, 458, 1713, 2367
AclWI	GGATC	6 cut(s)	1157, 1190, 1282, 1760, 1769, 2284
AcoI	YGGCCR	7 cut(s)	52, 56, 1002, 1353, 1370, 1933, 2143
AcsI	RAATTY	3 cut(s)	77, 2062, 2799
AcuI	CTGAAG	2 cut(s)	2016, 2986
AcvI	CACGTG	1 cut(s)	1347
AcyI	GRCGYC	6 cut(s)	5, 92, 200, 846, 2157, 2476
AfaI	GTAC	8 cut(s)	241, 443, 624, 651, 1035, 1267, 1919, 3029
AflIII	ACRYGT	2 cut(s)	456, 3024
AgeI	ACCGGT	1 cut(s)	594
AgsI	TTSAA	4 cut(s)	1087, 1174, 2105, 2672
AjiI	CACGTC	1 cut(s)	2174
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AleI	CACNNNNGTG	2 cut(s)	1505, 2319
AluBI	AGCT	7 cut(s)	114, 357, 1249, 1280, 2090, 2930, 2983
AluI	AGCT	7 cut(s)	114, 357, 1249, 1280, 2090, 2930, 2983
Alw21I	GWGCWC	2 cut(s)	359, 2749
Alw26I	GTCTC	7 cut(s)	277, 422, 1407, 1998, 2247, 2654, 2888
AlwI	GGATC	6 cut(s)	1157, 1190, 1282, 1760, 1769, 2284
Ama87I	CYCGRG	1 cut(s)	120
ApaI	GGGCCC	1 cut(s)	498
ApeKI	GCWGC	3 cut(s)	802, 2012, 2927
ApoI	RAATTY	3 cut(s)	77, 2062, 2799
AseI	ATTAAT	1 cut(s)	2903
AsiGI	ACCGGT	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	1033
AspLEI	GCGC	4 cut(s)	1912, 2017, 2159, 2569
AsuC2I	CCSGG	4 cut(s)	121, 122, 216, 1374
AsuII	TTCGAA	1 cut(s)	1755
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	5 cut(s)	1447, 1519, 1708, 2682, 2949
BaeGI	GKGCMC	1 cut(s)	498
BalI	TGGCCA	1 cut(s)	1935
BanI	GGYRCC	3 cut(s)	977, 1033, 2156
BanII	GRGCYC	4 cut(s)	359, 498, 1464, 2997
BarI	GAAGNNNNNNTAC	4 cut(s)	425, 457, 3055, 3087
BbrPI	CACGTG	1 cut(s)	1347
BbsI	GAAGAC	1 cut(s)	1792
Bbv12I	GWGCWC	2 cut(s)	359, 2749
BbvCI	CCTCAGC	1 cut(s)	1023
BbvI	GCAGC	3 cut(s)	814, 2024, 2939
BceAI	ACGGC	4 cut(s)	460, 1906, 2003, 2126
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciVI	GTATCC	1 cut(s)	3060
BclI	TGATCA	3 cut(s)	406, 1399, 2122
BcnI	CCSGG	4 cut(s)	121, 122, 216, 1374
BcoDI	GTCTC	7 cut(s)	277, 422, 1407, 1998, 2247, 2654, 2888
BfaI	CTAG	6 cut(s)	638, 731, 1493, 2021, 2165, 2448
BfmI	CTRYAG	3 cut(s)	1011, 1231, 2489
BfoI	RGCGCY	2 cut(s)	2018, 2160
BfuAI	ACCTGC	2 cut(s)	846, 2591
BfuI	GTATCC	1 cut(s)	3060
BglI	GCCNNNNNGGC	1 cut(s)	2154
BmcAI	AGTACT	3 cut(s)	241, 624, 1267
Bme18I	GGWCC	5 cut(s)	1447, 1519, 1708, 2682, 2949
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	2174
BmrI	ACTGGG	1 cut(s)	1869
BmsI	GCATC	9 cut(s)	180, 456, 658, 862, 1434, 1616, 2176, 2410, 2802
BmuI	ACTGGG	1 cut(s)	1869
BpiI	GAAGAC	1 cut(s)	1792
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
BpmI	CTGGAG	1 cut(s)	1932
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu14I	TTCGAA	1 cut(s)	1755
BpuEI	CTTGAG	3 cut(s)	2052, 2465, 2717
BpuMI	CCSGG	4 cut(s)	121, 122, 216, 1374
Bsa29I	ATCGAT	1 cut(s)	1764
BsaAI	YACGTR	2 cut(s)	1208, 1347
BsaHI	GRCGYC	6 cut(s)	5, 92, 200, 846, 2157, 2476
BsaI	GGTCTC	1 cut(s)	1407
BsaWI	WCCGGW	2 cut(s)	594, 824
Bse118I	RCCGGY	3 cut(s)	54, 594, 2828
Bse1I	ACTGG	6 cut(s)	1273, 1373, 1844, 1864, 2428, 2742
Bse3DI	GCAATG	2 cut(s)	26, 678
BseCI	ATCGAT	1 cut(s)	1764
BseGI	GGATG	6 cut(s)	44, 918, 1356, 2296, 2330, 2763
BseMI	GCAATG	2 cut(s)	26, 678
BseMII	CTCAG	3 cut(s)	1014, 1760, 2088
BseNI	ACTGG	6 cut(s)	1273, 1373, 1844, 1864, 2428, 2742
BseRI	GAGGAG	2 cut(s)	1731, 2765
BseSI	GKGCMC	1 cut(s)	498
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	814, 2024, 2939
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	2358
Bsh1236I	CGCG	4 cut(s)	257, 458, 1713, 2367
Bsh1285I	CGRYCG	2 cut(s)	55, 2211
BshNI	GGYRCC	3 cut(s)	977, 1033, 2156
BshTI	ACCGGT	1 cut(s)	594
BshVI	ATCGAT	1 cut(s)	1764
BsiEI	CGRYCG	2 cut(s)	55, 2211
BsiHKAI	GWGCWC	2 cut(s)	359, 2749
BsiHKCI	CYCGRG	1 cut(s)	120
BsiWI	CGTACG	1 cut(s)	441
BsmAI	GTCTC	7 cut(s)	277, 422, 1407, 1998, 2247, 2654, 2888
BsmBI	CGTCTC	3 cut(s)	277, 422, 1998
BsmI	GAATGC	4 cut(s)	1597, 2316, 2360, 2459
Bso31I	GGTCTC	1 cut(s)	1407
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	1755
Bsp120I	GGGCCC	1 cut(s)	494
Bsp1286I	GDGCHC	5 cut(s)	359, 498, 1464, 2749, 2997
Bsp19I	CCATGG	3 cut(s)	539, 999, 1596
BspCNI	CTCAG	3 cut(s)	1015, 1759, 2089
BspDI	ATCGAT	1 cut(s)	1764
BspFNI	CGCG	4 cut(s)	257, 458, 1713, 2367
BspHI	TCATGA	4 cut(s)	108, 351, 1701, 2125
BspMI	ACCTGC	2 cut(s)	846, 2591
BspPI	GGATC	6 cut(s)	1157, 1190, 1282, 1760, 1769, 2284
BspQI	GCTCTTC	1 cut(s)	3002
BspT104I	TTCGAA	1 cut(s)	1755
BspT107I	GGYRCC	3 cut(s)	977, 1033, 2156
BspTNI	GGTCTC	1 cut(s)	1407
BsrBI	CCGCTC	2 cut(s)	99, 144
BsrDI	GCAATG	2 cut(s)	26, 678
BsrFI	RCCGGY	3 cut(s)	54, 594, 2828
BsrI	ACTGG	6 cut(s)	1273, 1373, 1844, 1864, 2428, 2742
BssAI	RCCGGY	3 cut(s)	54, 594, 2828
BssNI	GRCGYC	6 cut(s)	5, 92, 200, 846, 2157, 2476
BssT1I	CCWWGG	9 cut(s)	228, 539, 999, 1064, 1338, 1596, 1674, 1824, 1904
Bst6I	CTCTTC	2 cut(s)	2891, 3002
BstACI	GRCGYC	6 cut(s)	5, 92, 200, 846, 2157, 2476
BstAPI	GCANNNNNTGC	1 cut(s)	2407
BstBAI	YACGTR	2 cut(s)	1208, 1347
BstBI	TTCGAA	1 cut(s)	1755
BstC8I	GCNNGC	9 cut(s)	56, 85, 101, 1423, 2470, 2791, 2830, 3102, 3129
BstDEI	CTNAG	4 cut(s)	584, 1023, 1746, 2097
BstDSI	CCRYGG	5 cut(s)	539, 999, 1596, 1711, 2365
BstEII	GGTNACC	1 cut(s)	2303
BstF5I	GGATG	6 cut(s)	44, 918, 1356, 2296, 2330, 2763
BstFNI	CGCG	4 cut(s)	257, 458, 1713, 2367
BstH2I	RGCGCY	2 cut(s)	2018, 2160
BstHHI	GCGC	4 cut(s)	1912, 2017, 2159, 2569
BstMAI	GTCTC	7 cut(s)	277, 422, 1407, 1998, 2247, 2654, 2888
BstMCI	CGRYCG	2 cut(s)	55, 2211
BstNSI	RCATGY	4 cut(s)	517, 1870, 2472, 3028
BstPI	GGTNACC	1 cut(s)	2303
BstSFI	CTRYAG	3 cut(s)	1011, 1231, 2489
BstSLI	GKGCMC	1 cut(s)	498
BstSNI	TACGTA	1 cut(s)	1208
BstUI	CGCG	4 cut(s)	257, 458, 1713, 2367
BstV1I	GCAGC	3 cut(s)	814, 2024, 2939
BstV2I	GAAGAC	1 cut(s)	1792
BstXI	CCANNNNNNTGG	2 cut(s)	1351, 2923
BstZI	CGGCCG	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	1764
BsuI	GTATCC	1 cut(s)	3060
BsuTUI	ATCGAT	1 cut(s)	1764
BtgI	CCRYGG	5 cut(s)	539, 999, 1596, 1711, 2365
BtgZI	GCGATG	2 cut(s)	1228, 2847
BtrI	CACGTC	1 cut(s)	2174
BtsCI	GGATG	6 cut(s)	44, 918, 1356, 2296, 2330, 2763
BtsI	GCAGTG	3 cut(s)	864, 2370, 3154
BveI	ACCTGC	2 cut(s)	846, 2591
Cac8I	GCNNGC	9 cut(s)	56, 85, 101, 1423, 2470, 2791, 2830, 3102, 3129
CciI	TCATGA	4 cut(s)	108, 351, 1701, 2125
CfoI	GCGC	4 cut(s)	1912, 2017, 2159, 2569
Cfr10I	RCCGGY	3 cut(s)	54, 594, 2828
Cfr42I	CCGCGG	2 cut(s)	1714, 2368
Cfr9I	CCCGGG	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	1764
CseI	GACGC	6 cut(s)	208, 312, 835, 1541, 2366, 2484
Csp6I	GTAC	8 cut(s)	240, 442, 623, 650, 1034, 1266, 1918, 3028
CspAI	ACCGGT	1 cut(s)	594
CviQI	GTAC	8 cut(s)	240, 442, 623, 650, 1034, 1266, 1918, 3028
DdeI	CTNAG	4 cut(s)	584, 1023, 1746, 2097
DinI	GGCGCC	1 cut(s)	2158
DrdI	GACNNNNNNGTC	1 cut(s)	1517
DseDI	GACNNNNNNGTC	1 cut(s)	1517
EaeI	YGGCCR	7 cut(s)	52, 56, 1002, 1353, 1370, 1933, 2143
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	2891, 3002
EarI	CTCTTC	2 cut(s)	2891, 3002
Ecl136II	GAGCTC	1 cut(s)	357
EclXI	CGGCCG	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	1208
Eco130I	CCWWGG	9 cut(s)	228, 539, 999, 1064, 1338, 1596, 1674, 1824, 1904
Eco24I	GRGCYC	4 cut(s)	359, 498, 1464, 2997
Eco31I	GGTCTC	1 cut(s)	1407
Eco47I	GGWCC	5 cut(s)	1447, 1519, 1708, 2682, 2949
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	2016, 2986
Eco72I	CACGTG	1 cut(s)	1347
Eco88I	CYCGRG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	2303
EcoICRI	GAGCTC	1 cut(s)	357
EcoO109I	RGGNCCY	3 cut(s)	1447, 1519, 2949
EcoO65I	GGTNACC	1 cut(s)	2303
EcoT14I	CCWWGG	9 cut(s)	228, 539, 999, 1064, 1338, 1596, 1674, 1824, 1904
EcoT22I	ATGCAT	1 cut(s)	2461
EcoT38I	GRGCYC	4 cut(s)	359, 498, 1464, 2997
EgeI	GGCGCC	1 cut(s)	2158
EheI	GGCGCC	1 cut(s)	2158
ErhI	CCWWGG	9 cut(s)	228, 539, 999, 1064, 1338, 1596, 1674, 1824, 1904
Esp3I	CGTCTC	3 cut(s)	277, 422, 1998
FauI	CCCGC	4 cut(s)	92, 1908, 2782, 3085
FbaI	TGATCA	3 cut(s)	406, 1399, 2122
FblI	GTMKAC	1 cut(s)	1098
FokI	GGATG	6 cut(s)	31, 905, 1363, 2303, 2337, 2750
FriOI	GRGCYC	4 cut(s)	359, 498, 1464, 2997
FseI	GGCCGGCC	1 cut(s)	58
FspBI	CTAG	6 cut(s)	638, 731, 1493, 2021, 2165, 2448
GlaI	GCGC	4 cut(s)	1911, 2016, 2158, 2568
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	1932
HaeII	RGCGCY	2 cut(s)	2018, 2160
HgaI	GACGC	6 cut(s)	208, 312, 835, 1541, 2366, 2484
HhaI	GCGC	4 cut(s)	1912, 2017, 2159, 2569
Hin1I	GRCGYC	6 cut(s)	5, 92, 200, 846, 2157, 2476
Hin6I	GCGC	4 cut(s)	1910, 2015, 2157, 2567
HinP1I	GCGC	4 cut(s)	1910, 2015, 2157, 2567
HindIII	AAGCTT	1 cut(s)	1247
Hpy166II	GTNNAC	3 cut(s)	864, 1099, 1510
Hpy8I	GTNNAC	3 cut(s)	864, 1099, 1510
Hpy99I	CGWCG	8 cut(s)	53, 97, 202, 291, 328, 851, 1361, 2478
HpyCH4IV	ACGT	5 cut(s)	92, 440, 1207, 1346, 2173
HpyF3I	CTNAG	4 cut(s)	584, 1023, 1746, 2097
HpySE526I	ACGT	5 cut(s)	92, 440, 1207, 1346, 2173
Hsp92I	GRCGYC	6 cut(s)	5, 92, 200, 846, 2157, 2476
HspAI	GCGC	4 cut(s)	1910, 2015, 2157, 2567
KasI	GGCGCC	1 cut(s)	2156
KflI	GGGWCCC	1 cut(s)	1519
KpnI	GGTACC	1 cut(s)	1037
KroI	GCCGGC	2 cut(s)	54, 2828
KroNI	GCCGGC	2 cut(s)	56, 2830
Ksp22I	TGATCA	3 cut(s)	406, 1399, 2122
KspI	CCGCGG	2 cut(s)	1714, 2368
LguI	GCTCTTC	1 cut(s)	3002
LmnI	GCTCC	3 cut(s)	1459, 1583, 1951
Lsp1109I	GCAGC	3 cut(s)	814, 2024, 2939
LweI	GCATC	9 cut(s)	180, 456, 658, 862, 1434, 1616, 2176, 2410, 2802
MaeI	CTAG	6 cut(s)	638, 731, 1493, 2021, 2165, 2448
MaeII	ACGT	5 cut(s)	92, 440, 1207, 1346, 2173
MaeIII	GTNAC	8 cut(s)	895, 1079, 1652, 2281, 2296, 2303, 2354, 2911
MbiI	CCGCTC	2 cut(s)	99, 144
MboII	GAAGA	8 cut(s)	340, 571, 1792, 2009, 2431, 2878, 2989, 2992
MhlI	GDGCHC	5 cut(s)	359, 498, 1464, 2749, 2997
MlsI	TGGCCA	1 cut(s)	1935
MluCI	AATT	5 cut(s)	77, 175, 2062, 2588, 2799
MluI	ACGCGT	1 cut(s)	456
MluNI	TGGCCA	1 cut(s)	1935
Mly113I	GGCGCC	1 cut(s)	2157
MlyI	GAGTC	2 cut(s)	476, 2766
MmeI	TCCRAC	2 cut(s)	1127, 2246
Mox20I	TGGCCA	1 cut(s)	1935
Mph1103I	ATGCAT	1 cut(s)	2461
MroNI	GCCGGC	2 cut(s)	54, 2828
MscI	TGGCCA	1 cut(s)	1935
MseI	TTAA	2 cut(s)	2813, 2903
MslI	CAYNNNNRTG	4 cut(s)	185, 1349, 1505, 2319
Msp20I	TGGCCA	1 cut(s)	1935
MspA1I	CMGCKG	4 cut(s)	1713, 2367, 2759, 2930
Mva1269I	GAATGC	4 cut(s)	1597, 2316, 2360, 2459
MvnI	CGCG	4 cut(s)	257, 458, 1713, 2367
NaeI	GCCGGC	2 cut(s)	56, 2830
NarI	GGCGCC	1 cut(s)	2157
NciI	CCSGG	4 cut(s)	121, 122, 216, 1374
NcoI	CCATGG	3 cut(s)	539, 999, 1596
NgoMIV	GCCGGC	2 cut(s)	54, 2828
NmeAIII	GCCGAG	2 cut(s)	306, 1030
NmuCI	GTSAC	5 cut(s)	895, 1652, 2281, 2296, 2354
NsiI	ATGCAT	1 cut(s)	2461
NspI	RCATGY	4 cut(s)	517, 1870, 2472, 3028
NspV	TTCGAA	1 cut(s)	1755
OliI	CACNNNNGTG	2 cut(s)	1505, 2319
PaeI	GCATGC	1 cut(s)	2472
PagI	TCATGA	4 cut(s)	108, 351, 1701, 2125
PciI	ACATGT	1 cut(s)	3024
PciSI	GCTCTTC	1 cut(s)	3002
PcsI	WCGNNNNNNNCGW	3 cut(s)	437, 855, 1761
PctI	GAATGC	4 cut(s)	1597, 2316, 2360, 2459
PdiI	GCCGGC	2 cut(s)	56, 2830
PfeI	GAWTC	8 cut(s)	610, 655, 751, 1069, 1642, 1752, 1973, 2081
Pfl23II	CGTACG	1 cut(s)	441
PinAI	ACCGGT	1 cut(s)	594
PleI	GAGTC	2 cut(s)	476, 2766
PluTI	GGCGCC	1 cut(s)	2160
PmaCI	CACGTG	1 cut(s)	1347
PmlI	CACGTG	1 cut(s)	1347
PpsI	GAGTC	2 cut(s)	476, 2766
Ppu21I	YACGTR	2 cut(s)	1208, 1347
PpuMI	RGGWCCY	3 cut(s)	1447, 1519, 2949
PscI	ACATGT	1 cut(s)	3024
PshBI	ATTAAT	1 cut(s)	2903
Psp124BI	GAGCTC	1 cut(s)	359
Psp5II	RGGWCCY	3 cut(s)	1447, 1519, 2949
PspCI	CACGTG	1 cut(s)	1347
PspEI	GGTNACC	1 cut(s)	2303
PspFI	CCCAGC	1 cut(s)	245
PspLI	CGTACG	1 cut(s)	441
PspOMI	GGGCCC	1 cut(s)	494
PspPPI	RGGWCCY	3 cut(s)	1447, 1519, 2949
PsrI	GAACNNNNNNTAC	2 cut(s)	1154, 1186
PvuII	CAGCTG	1 cut(s)	2930
RigI	GGCCGGCC	1 cut(s)	58
RsaI	GTAC	8 cut(s)	241, 443, 624, 651, 1035, 1267, 1919, 3029
RsaNI	GTAC	8 cut(s)	240, 442, 623, 650, 1034, 1266, 1918, 3028
RseI	CAYNNNNRTG	4 cut(s)	185, 1349, 1505, 2319
SacI	GAGCTC	1 cut(s)	359
SacII	CCGCGG	2 cut(s)	1714, 2368
SapI	GCTCTTC	1 cut(s)	3002
SaqAI	TTAA	2 cut(s)	2813, 2903
ScaI	AGTACT	3 cut(s)	241, 624, 1267
SchI	GAGTC	2 cut(s)	476, 2766
SduI	GDGCHC	5 cut(s)	359, 498, 1464, 2749, 2997
SfaNI	GCATC	9 cut(s)	180, 456, 658, 862, 1434, 1616, 2176, 2410, 2802
SfcI	CTRYAG	3 cut(s)	1011, 1231, 2489
SfoI	GGCGCC	1 cut(s)	2158
Sfr303I	CCGCGG	2 cut(s)	1714, 2368
SfuI	TTCGAA	1 cut(s)	1755
SgrBI	CCGCGG	2 cut(s)	1714, 2368
SinI	GGWCC	5 cut(s)	1447, 1519, 1708, 2682, 2949
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	4 cut(s)	185, 1349, 1505, 2319
SmlI	CTYRAG	3 cut(s)	2067, 2480, 2696
SmoI	CTYRAG	3 cut(s)	2067, 2480, 2696
SnaBI	TACGTA	1 cut(s)	1208
SphI	GCATGC	1 cut(s)	2472
Sse9I	AATT	5 cut(s)	77, 175, 2062, 2588, 2799
SspDI	GGCGCC	1 cut(s)	2156
SspI	AATATT	3 cut(s)	378, 2611, 2901
SspMI	CTAG	6 cut(s)	638, 731, 1493, 2021, 2165, 2448
SstI	GAGCTC	1 cut(s)	359
StyI	CCWWGG	9 cut(s)	228, 539, 999, 1064, 1338, 1596, 1674, 1824, 1904
TaiI	ACGT	5 cut(s)	95, 443, 1210, 1349, 2176
TaqII	GACCGA	1 cut(s)	337
TasI	AATT	5 cut(s)	77, 175, 2062, 2588, 2799
TatI	WGTACW	4 cut(s)	239, 622, 649, 1265
TfiI	GAWTC	8 cut(s)	610, 655, 751, 1069, 1642, 1752, 1973, 2081
Tru1I	TTAA	2 cut(s)	2813, 2903
Tru9I	TTAA	2 cut(s)	2813, 2903
TseFI	GTSAC	5 cut(s)	895, 1652, 2281, 2296, 2354
TseI	GCWGC	3 cut(s)	802, 2012, 2927
Tsp45I	GTSAC	5 cut(s)	895, 1652, 2281, 2296, 2354
TspDTI	ATGAA	8 cut(s)	524, 764, 1604, 1690, 2142, 2581, 2878, 3053
TspGWI	ACGGA	4 cut(s)	37, 304, 1374, 2524
TspMI	CCCGGG	1 cut(s)	120
VpaK11BI	GGWCC	5 cut(s)	1447, 1519, 1708, 2682, 2949
VspI	ATTAAT	1 cut(s)	2903
XapI	RAATTY	3 cut(s)	77, 2062, 2799
XbaI	TCTAGA	1 cut(s)	2447
XceI	RCATGY	4 cut(s)	517, 1870, 2472, 3028
XcmI	CCANNNNNNNNNTGG	3 cut(s)	672, 1594, 2428
XmaI	CCCGGG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	6 cut(s)	638, 731, 1493, 2021, 2165, 2448
ZraI	GACGTC	1 cut(s)	93
ZrmI	AGTACT	3 cut(s)	241, 624, 1267
Zsp2I	ATGCAT	1 cut(s)	2461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.