Rroxscaffold_5G00373060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017914
Physical Location & Seq
Reverse (-)
54339083 .. 54339829
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373060.1

Sequence Viewer

Length: 357 bp
ATGGATGGTGGGTTGTCCTGGGCTGATCAGTGGGACACTAATCCCGATCCACCGCCATCAAGACCATCGGAGAATGACAAGAAGAAGAACAAGGAGGGGAAGAGCAAGTTCGGGAAGCTGAGCTTCAAATGGTTGAAACTCGGCAGCAAGAAAAGTTCAAAGGAGCAAGGCCGGGAAGACAATATTTCTAGCCCTAATCAAAACACCACATCCATCTCATTCTCAAAGAAAAGACCTGTTGTTTCACAAATAAGCTTTGCTATTTACATACAGATTCTGATAGAAGATGTAAGCACATGCAAGAAAGGTGAACATGCCCAAATATGTACCGGGAATAAGTACGCATCGAAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

9.57

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24405 AT1G67670
fragaria_vesca FvH4_4g24600
prunus_persica Prupe.1G235000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431601
rosa_roxburghii Rroxscaffold_5G00373060
rosa_samantha Rh4AG307900 Rh4BG315500 Rh4CG331000 Rh4DG310400
rosa_wichuraiana Rw4G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 41
AfaI GTAC 2 cut(s) 328, 341
AgsI TTSAA 3 cut(s) 127, 136, 159
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 3 cut(s) 118, 123, 255
AluI AGCT 3 cut(s) 118, 123, 255
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 144
AsuC2I CCSGG 2 cut(s) 173, 331
AsuHPI GGTGA 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 156
BccI CCATC 3 cut(s) 64, 73, 221
BciT130I CCWGG 1 cut(s) 19
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 2 cut(s) 173, 331
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 145
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 3 cut(s) 19, 173, 331
BmrFI CCNGG 3 cut(s) 19, 173, 331
BmsI GCATC 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 173, 331
BsaJI CCNNGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 10, 209
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 172, 330
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 25, 46
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 25, 46
Bst2UI CCWGG 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 10, 209
BstKTI GATC 2 cut(s) 28, 49
BstMBI GATC 2 cut(s) 25, 46
BstNI CCWGG 1 cut(s) 19
BstNSI RCATGY 2 cut(s) 300, 317
BstSCI CCNGG 3 cut(s) 17, 171, 329
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 10, 209
BtsIMutI CAGTG 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 277
Csp6I GTAC 2 cut(s) 327, 340
CviAII CATG 2 cut(s) 297, 314
CviJI RGCY 6 cut(s) 23, 118, 123, 171, 192, 255
CviKI_1 RGCY 6 cut(s) 23, 118, 123, 171, 192, 255
CviQI GTAC 2 cut(s) 327, 340
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 27, 48
DpnII GATC 2 cut(s) 25, 46
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 300, 317
FaiI YATR 4 cut(s) 269, 298, 315, 325
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 296, 313
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 2 cut(s) 17, 196
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 171
HapII CCGG 2 cut(s) 172, 330
Hin1II CATG 2 cut(s) 300, 317
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 1 cut(s) 274
HpaII CCGG 2 cut(s) 172, 330
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 70, 279
Hpy188III TCNNGA 3 cut(s) 44, 60, 112
Hpy8I GTNNAC 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 2 cut(s) 300, 317
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 46
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 4, 31, 185, 249, 343
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 353
MalI GATC 2 cut(s) 27, 48
MboI GATC 2 cut(s) 25, 46
MboII GAAGA 5 cut(s) 94, 97, 112, 188, 296
MnlI CCTC 1 cut(s) 88
MspI CCGG 2 cut(s) 172, 330
MspR9I CCNGG 3 cut(s) 19, 173, 331
MvaI CCWGG 1 cut(s) 19
NciI CCSGG 2 cut(s) 173, 331
NdeII GATC 2 cut(s) 25, 46
NlaIII CATG 2 cut(s) 300, 317
NmeAIII GCCGAG 1 cut(s) 120
NspI RCATGY 2 cut(s) 300, 317
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 328, 341
RsaNI GTAC 2 cut(s) 327, 340
SapI GCTCTTC 1 cut(s) 95
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 25, 46
ScrFI CCNGG 3 cut(s) 19, 173, 331
SetI ASST 6 cut(s) 120, 125, 238, 257, 310, 356
SfaNI GCATC 1 cut(s) 353
SsiI CCGC 1 cut(s) 53
SspI AATATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 17, 171, 329
TaiI ACGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 347
TfiI GAWTC 1 cut(s) 274
TscAI CASTG 1 cut(s) 35
TseI GCWGC 1 cut(s) 144
TspRI CASTG 1 cut(s) 35
XceI RCATGY 2 cut(s) 300, 317
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.