Rh4DG310400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
53280478 .. 53281300
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG310400.1

Sequence Viewer

Length: 189 bp
ATGGATGGTGGGTTGTCCTGGGCTGATCAGTGGGACACCAATCCCGATCCACCGCCATCAAGACCATCGGAGAATGACAAGAAGAAGAGCAAGGAGGGGAAGAGCAAGTTCGGGAAGCTGAGCTTCAAATGGTTGAAACTCGGCAGCAAGAAAAGTTCAAAGGAGCAAGGCCGGGAAGACAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.99

Weight (kDa)

9.52

Isoelectric Point (pI)

23.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24405 AT1G67670
fragaria_vesca FvH4_4g24600
prunus_persica Prupe.1G235000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431601
rosa_roxburghii Rroxscaffold_5G00373060
rosa_samantha Rh4AG307900 Rh4BG315500 Rh4CG331000 Rh4DG310400
rosa_wichuraiana Rw4G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 41
AgsI TTSAA 3 cut(s) 127, 136, 159
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 2 cut(s) 118, 123
AluI AGCT 2 cut(s) 118, 123
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 64, 73
BciT130I CCWGG 1 cut(s) 19
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 173
BisI GCNGC 1 cut(s) 145
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 19, 173
BmrFI CCNGG 2 cut(s) 19, 173
BpiI GAAGAC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 25, 46
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 2 cut(s) 80, 95
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 25, 46
Bst2UI CCWGG 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 80, 95
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 28, 49
BstMBI GATC 2 cut(s) 25, 46
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 2 cut(s) 17, 171
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 35
CviJI RGCY 4 cut(s) 23, 118, 123, 171
CviKI_1 RGCY 4 cut(s) 23, 118, 123, 171
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 27, 48
DpnII GATC 2 cut(s) 25, 46
Eam1104I CTCTTC 2 cut(s) 80, 95
EarI CTCTTC 2 cut(s) 80, 95
EcoRII CCWGG 1 cut(s) 17
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 47
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 172
HpaII CCGG 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 44, 60, 112
HpyF3I CTNAG 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 46
LguI GCTCTTC 2 cut(s) 80, 95
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 4, 31, 185
Lsp1109I GCAGC 1 cut(s) 156
MalI GATC 2 cut(s) 27, 48
MboI GATC 2 cut(s) 25, 46
MboII GAAGA 4 cut(s) 94, 97, 112, 188
MnlI CCTC 1 cut(s) 88
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 19, 173
MvaI CCWGG 1 cut(s) 19
NciI CCSGG 1 cut(s) 173
NdeII GATC 2 cut(s) 25, 46
NmeAIII GCCGAG 1 cut(s) 120
PciSI GCTCTTC 2 cut(s) 80, 95
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PsyI GACNNNGTC 1 cut(s) 182
SapI GCTCTTC 2 cut(s) 80, 95
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 25, 46
ScrFI CCNGG 2 cut(s) 19, 173
SetI ASST 2 cut(s) 120, 125
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 17, 171
TscAI CASTG 1 cut(s) 35
TseI GCWGC 1 cut(s) 144
TspRI CASTG 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.