Rroxscaffold_5G00376920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018426
Physical Location & Seq
Forward (+)
57500024 .. 57501620
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376920.1

Sequence Viewer

Length: 840 bp
ATGCCAATAACCGACGATATGGATCAGTTATCCCAGTTGCCGGAAATCATTATGGAGAAAATCCTCCATCTGTTGCCTAGTGCAGAAGATGCAGTGCGCATGAGCTTGTACACTGTCGAGGACATGGAAGAGTTTTTGGGACTCACTACCATAGTTTCATTATCGTACCGTTTTCCTTGTAGTCCTACTTTGGATCTCGGATCATATATTACAAAGATTGCGTTAAGTGTTTGTATACTGGACAAAGCATTAGTTCAAAACGGTACAAGGTTAAACTGTCTGAAGTCCCTCGATTTGTTGCAAGTTGACTTGAATGGGGTGTTCTGGGAGTTCCTTTCTAGATGTCCTTCCCTTGAAAATTTGGGTGTCGAATACTGTCACGACCAAGGCTGGACAGTTTCGAGTCATCAACTCAAATCCCCAACAATGGGTATTATGGGTGGATGCAAAAACTTCGACGTCGACTTAGATACTCCGGATCTTCTTTATTACTCATACAAGGGTCCTGTATTAATCCCATCCTTGTATAGGCAACAGGACTGTATGAACCTGAAGGTACTGAAGCTTAATCTAAGGACGAACCCTCCAAATAGTCTCGATTCTCATTGGTCTCTTGCATTGCGAAAATATCTTGGGAAGTCGCCACAACTTGAAGGATTCAGCTTAGAGCTTCATTCTAATCCTATAAAAATCACATTTTCTCCGGAAGAACCAAGAGAAGAAGAAATTCATCCACCTTCACAAGTCTTGGGTTTGTCACTGCACTTGCCCTTTTTCCAATCACCTTATCTTTCATGTGCTTGGAAGAAAATCTCCTCTGCTGTGGAATATCAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

279

Amino Acids

31.59

Weight (kDa)

5.06

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018426)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28000
rosa_laevigata RLG00000006564
rosa_roxburghii Rroxscaffold_5G00376920
rosa_rugosa Rorug04G0288900
rosa_samantha Rh4AG343400 Rh4BG351900 Rh4BG352000 Rh4CG366500 Rh4DG346000
rosa_wichuraiana Rw4G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
Acc16I TGCGCA 1 cut(s) 98
AccI GTMKAC 2 cut(s) 235, 462
AccIII TCCGGA 2 cut(s) 475, 703
AclWI GGATC 4 cut(s) 30, 201, 208, 486
AcsI RAATTY 2 cut(s) 358, 726
AcuI CTGAAG 3 cut(s) 302, 572, 581
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 4 cut(s) 110, 167, 265, 558
AfiI CCNNNNNNNGG 4 cut(s) 40, 427, 428, 528
AgsI TTSAA 4 cut(s) 257, 313, 356, 653
AluBI AGCT 4 cut(s) 105, 565, 663, 670
AluI AGCT 4 cut(s) 105, 565, 663, 670
Alw26I GTCTC 2 cut(s) 599, 615
AlwI GGATC 4 cut(s) 30, 201, 208, 486
Aor13HI TCCGGA 2 cut(s) 475, 703
ApoI RAATTY 2 cut(s) 358, 726
AseI ATTAAT 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 774
AvaII GGWCC 1 cut(s) 503
BccI CCATC 2 cut(s) 75, 526
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BcoDI GTCTC 2 cut(s) 599, 615
BfaI CTAG 2 cut(s) 78, 339
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 504
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 79, 434
BmuI ACTGGG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 385
BsaWI WCCGGW 2 cut(s) 475, 703
BsaXI ACNNNNNCTCC 4 cut(s) 568, 598, 685, 715
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 427, 428, 528
Bse1I ACTGG 2 cut(s) 34, 243
Bse3DI GCAATG 1 cut(s) 617
Bse8I GATNNNNATC 1 cut(s) 21
BseAI TCCGGA 2 cut(s) 475, 703
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 3 cut(s) 449, 518, 730
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 4 cut(s) 40, 427, 428, 528
BseMI GCAATG 1 cut(s) 617
BseNI ACTGG 2 cut(s) 34, 243
BseRI GAGGAG 1 cut(s) 805
BsgI GTGCAG 2 cut(s) 102, 746
BsiSI CCGG 3 cut(s) 41, 476, 704
BslFI GGGAC 2 cut(s) 153, 271
BslI CCNNNNNNNGG 4 cut(s) 40, 427, 428, 528
BsmAI GTCTC 2 cut(s) 599, 615
BsmFI GGGAC 2 cut(s) 153, 271
Bso31I GGTCTC 1 cut(s) 615
Bsp13I TCCGGA 2 cut(s) 475, 703
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 4 cut(s) 22, 193, 200, 478
BspEI TCCGGA 2 cut(s) 475, 703
BspLI GGNNCC 1 cut(s) 504
BspPI GGATC 4 cut(s) 30, 201, 208, 486
BspTNI GGTCTC 1 cut(s) 615
BsrDI GCAATG 1 cut(s) 617
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 2 cut(s) 34, 243
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 4 cut(s) 22, 193, 200, 478
BssNAI GTATAC 1 cut(s) 236
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 385
Bst1107I GTATAC 1 cut(s) 236
Bst4CI ACNGT 8 cut(s) 115, 170, 263, 278, 377, 397, 542, 837
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 466, 572, 664
BstENI CCTNNNNNAGG 1 cut(s) 526
BstF5I GGATG 3 cut(s) 449, 518, 730
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 25, 196, 203, 481
BstMAI GTCTC 2 cut(s) 599, 615
BstMBI GATC 4 cut(s) 22, 193, 200, 478
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstX2I RGATCY 2 cut(s) 193, 478
BstYI RGATCY 2 cut(s) 193, 478
BstZ17I GTATAC 1 cut(s) 236
BtsCI GGATG 3 cut(s) 449, 518, 730
BtsI GCAGTG 2 cut(s) 99, 758
BtsIMutI CAGTG 3 cut(s) 99, 111, 758
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 503
Csp6I GTAC 4 cut(s) 109, 166, 264, 557
CviAII CATG 3 cut(s) 100, 124, 795
CviJI RGCY 5 cut(s) 105, 390, 565, 663, 670
CviKI_1 RGCY 5 cut(s) 105, 390, 565, 663, 670
CviQI GTAC 4 cut(s) 109, 166, 264, 557
DdeI CTNAG 3 cut(s) 466, 572, 664
DpnI GATC 4 cut(s) 24, 195, 202, 480
DpnII GATC 4 cut(s) 22, 193, 200, 478
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 3 cut(s) 302, 572, 581
EcoNI CCTNNNNNAGG 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 3 cut(s) 103, 127, 798
FaqI GGGAC 2 cut(s) 153, 271
FatI CATG 3 cut(s) 99, 123, 794
FblI GTMKAC 2 cut(s) 235, 462
FokI GGATG 3 cut(s) 456, 505, 717
FspAI RTGCGCAY 1 cut(s) 98
FspBI CTAG 2 cut(s) 78, 339
FspI TGCGCA 1 cut(s) 98
GlaI GCGC 1 cut(s) 98
HapII CCGG 3 cut(s) 41, 476, 704
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 103, 127, 798
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 2 cut(s) 307, 463
HindII GTYRAC 2 cut(s) 307, 463
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 4 cut(s) 141, 403, 599, 657
HpaII CCGG 3 cut(s) 41, 476, 704
HphI GGTGA 1 cut(s) 774
Hpy166II GTNNAC 4 cut(s) 111, 236, 307, 463
Hpy188I TCNGA 2 cut(s) 200, 282
Hpy188III TCNNGA 5 cut(s) 339, 380, 476, 596, 704
Hpy8I GTNNAC 4 cut(s) 111, 236, 307, 463
Hpy99I CGWCG 3 cut(s) 17, 461, 464
HpyAV CCTTC 4 cut(s) 357, 547, 647, 747
HpyCH4III ACNGT 8 cut(s) 115, 170, 263, 278, 377, 397, 542, 837
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 6 cut(s) 83, 92, 301, 447, 617, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 466, 572, 664
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 103, 127, 798
HspAI GCGC 1 cut(s) 97
Kpn2I TCCGGA 2 cut(s) 475, 703
Kzo9I GATC 4 cut(s) 22, 193, 200, 478
LweI GCATC 2 cut(s) 79, 434
MaeI CTAG 2 cut(s) 78, 339
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 377, 756
MalI GATC 4 cut(s) 24, 195, 202, 480
MboI GATC 4 cut(s) 22, 193, 200, 478
MboII GAAGA 7 cut(s) 98, 140, 473, 719, 731, 734, 817
MflI RGATCY 2 cut(s) 193, 478
MluCI AATT 2 cut(s) 358, 726
MlyI GAGTC 2 cut(s) 135, 412
MnlI CCTC 5 cut(s) 74, 112, 299, 594, 826
MroI TCCGGA 2 cut(s) 475, 703
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 4 cut(s) 224, 272, 512, 567
MspI CCGG 3 cut(s) 41, 476, 704
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 4 cut(s) 22, 193, 200, 478
NlaIII CATG 3 cut(s) 103, 127, 798
NlaIV GGNNCC 1 cut(s) 504
NmuCI GTSAC 2 cut(s) 377, 756
NsbI TGCGCA 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 599, 657
PleI GAGTC 2 cut(s) 135, 411
PpsI GAGTC 2 cut(s) 135, 411
PpuMI RGGWCCY 1 cut(s) 503
PshBI ATTAAT 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 503
PspPPI RGGWCCY 1 cut(s) 503
PsuI RGATCY 2 cut(s) 193, 478
RsaI GTAC 4 cut(s) 110, 167, 265, 558
RsaNI GTAC 4 cut(s) 109, 166, 264, 557
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 4 cut(s) 224, 272, 512, 567
Sau3AI GATC 4 cut(s) 22, 193, 200, 478
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 2 cut(s) 135, 412
SfaNI GCATC 2 cut(s) 79, 434
SinI GGWCC 1 cut(s) 503
Sse9I AATT 2 cut(s) 358, 726
SspMI CTAG 2 cut(s) 78, 339
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 8 cut(s) 115, 170, 263, 278, 377, 397, 542, 837
TaiI ACGT 1 cut(s) 462
TaqI TCGA 7 cut(s) 117, 291, 369, 401, 456, 462, 597
TasI AATT 2 cut(s) 358, 726
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 2 cut(s) 599, 657
Tru1I TTAA 4 cut(s) 224, 272, 512, 567
Tru9I TTAA 4 cut(s) 224, 272, 512, 567
TscAI CASTG 3 cut(s) 99, 118, 765
TseFI GTSAC 2 cut(s) 377, 756
Tsp45I GTSAC 2 cut(s) 377, 756
TspDTI ATGAA 5 cut(s) 147, 560, 662, 719, 783
TspRI CASTG 3 cut(s) 99, 118, 765
VpaK11BI GGWCC 1 cut(s) 503
VspI ATTAAT 1 cut(s) 512
XagI CCTNNNNNAGG 1 cut(s) 526
XapI RAATTY 2 cut(s) 358, 726
XbaI TCTAGA 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 235, 462
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 2 cut(s) 78, 339
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.