Rorug04G0288900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0018426
Physical Location & Seq
Reverse (-)
46217774 .. 46218724
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0288900.1

Sequence Viewer

Length: 354 bp
ATGAAGACTACCTTAACACTTGTGGTGTTCGTTGCCTTTGTCTTGGTTTTTGCATCTCTGCAATCAAATGCTAAACGGCTGACTTTGAAAGACAACCACCGTAAGCTCAGCGATGATCGGCGCCAAAGCGAAACAAATGCTGTCCCAACGGCTGGCGTTGGCGCCAAAGATGCCAAAGACGTTGTGGCCGATCAAAGTGATGAAGATGATGTGAACCCGACTTATCAACACTATGGAGGTACTGGTTCGAATCCAGACTCATCAACCGACACTCACCGTTATTATTCTGTGGATGACCGTACCGGTCACCAAGATTCGAGCTCGAACGATGGTGGACGGAAGCCCAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

6.17

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018426)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28000
rosa_laevigata RLG00000006564
rosa_roxburghii Rroxscaffold_5G00376920
rosa_rugosa Rorug04G0288900
rosa_samantha Rh4AG343400 Rh4BG351900 Rh4BG352000 Rh4CG366500 Rh4DG346000
rosa_wichuraiana Rw4G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 120, 161
AccB7I CCANNNNNTGG 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 186
AcyI GRCGYC 2 cut(s) 121, 162
AfaI GTAC 2 cut(s) 241, 301
AfiI CCNNNNNNNGG 1 cut(s) 152
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 106, 321
AluI AGCT 2 cut(s) 106, 321
Alw21I GWGCWC 1 cut(s) 323
AoxI GGCC 1 cut(s) 186
AsiGI ACCGGT 1 cut(s) 302
AspLEI GCGC 2 cut(s) 123, 164
AsuHPI GGTGA 2 cut(s) 266, 299
AsuII TTCGAA 1 cut(s) 248
BanI GGYRCC 2 cut(s) 120, 161
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 323
BccI CCATC 1 cut(s) 323
BceAI ACGGC 2 cut(s) 92, 165
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BfoI RGCGCY 2 cut(s) 124, 165
BlpI GCTNAGC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 122, 163
BmsI GCATC 2 cut(s) 62, 160
BpiI GAAGAC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 248
BsaHI GRCGYC 2 cut(s) 121, 162
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 247
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 2 cut(s) 120, 161
BshTI ACCGGT 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 115, 190
Bsp1720I GCTNAGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 122, 163
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 2 cut(s) 120, 161
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 302
BssMI GATC 2 cut(s) 115, 190
BssNI GRCGYC 2 cut(s) 121, 162
Bst4CI ACNGT 3 cut(s) 101, 278, 299
BstACI GRCGYC 2 cut(s) 121, 162
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 2 cut(s) 124, 165
BstHHI GCGC 2 cut(s) 123, 164
BstKTI GATC 2 cut(s) 118, 193
BstMBI GATC 2 cut(s) 115, 190
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 2 cut(s) 123, 164
Cfr10I RCCGGY 1 cut(s) 302
Csp6I GTAC 2 cut(s) 240, 300
CspAI ACCGGT 1 cut(s) 302
CviJI RGCY 6 cut(s) 79, 106, 152, 188, 321, 343
CviKI_1 RGCY 6 cut(s) 79, 106, 152, 188, 321, 343
CviQI GTAC 2 cut(s) 240, 300
DdeI CTNAG 1 cut(s) 107
DinI GGCGCC 2 cut(s) 122, 163
DpnI GATC 2 cut(s) 117, 192
DpnII GATC 2 cut(s) 115, 190
EaeI YGGCCR 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 321
Eco91I GGTNACC 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 321
EcoO65I GGTNACC 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 323
EgeI GGCGCC 2 cut(s) 122, 163
EheI GGCGCC 2 cut(s) 122, 163
FaiI YATR 1 cut(s) 234
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 128
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 323
GlaI GCGC 2 cut(s) 122, 163
HaeII RGCGCY 2 cut(s) 124, 165
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 303
HhaI GCGC 2 cut(s) 123, 164
Hin1I GRCGYC 2 cut(s) 121, 162
Hin6I GCGC 2 cut(s) 121, 162
HinP1I GCGC 2 cut(s) 121, 162
HinfI GANTC 3 cut(s) 250, 257, 314
HpaII CCGG 1 cut(s) 303
HphI GGTGA 2 cut(s) 266, 299
Hpy166II GTNNAC 2 cut(s) 214, 335
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 2 cut(s) 214, 335
HpyCH4III ACNGT 3 cut(s) 101, 278, 299
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 53, 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 2 cut(s) 121, 162
HspAI GCGC 2 cut(s) 121, 162
KasI GGCGCC 2 cut(s) 120, 161
Kzo9I GATC 2 cut(s) 115, 190
LpnPI CCDG 4 cut(s) 138, 228, 267, 316
LweI GCATC 2 cut(s) 62, 160
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 117, 192
MboI GATC 2 cut(s) 115, 190
MboII GAAGA 2 cut(s) 16, 215
MhlI GDGCHC 1 cut(s) 323
Mly113I GGCGCC 2 cut(s) 121, 162
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 1 cut(s) 230
MseI TTAA 1 cut(s) 14
MspI CCGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 170
NarI GGCGCC 2 cut(s) 121, 162
NdeII GATC 2 cut(s) 115, 190
NlaIV GGNNCC 2 cut(s) 122, 163
NmuCI GTSAC 1 cut(s) 305
NspV TTCGAA 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 250, 314
PflMI CCANNNNNTGG 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 302
PleI GAGTC 1 cut(s) 251
PluTI GGCGCC 2 cut(s) 124, 165
PpsI GAGTC 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 323
PspEI GGTNACC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 122, 163
RsaI GTAC 2 cut(s) 241, 301
RsaNI GTAC 2 cut(s) 240, 300
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 2 cut(s) 115, 190
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 323
SetI ASST 5 cut(s) 14, 108, 183, 241, 323
SfaNI GCATC 2 cut(s) 62, 160
SfoI GGCGCC 2 cut(s) 122, 163
SfuI TTCGAA 1 cut(s) 248
SspDI GGCGCC 2 cut(s) 120, 161
SstI GAGCTC 1 cut(s) 323
TaaI ACNGT 3 cut(s) 101, 278, 299
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 248, 317, 323
TfiI GAWTC 2 cut(s) 250, 314
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 17, 216
TspGWI ACGGA 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.