Rh4CG366500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018426
Physical Location & Seq
Forward (+)
62162001 .. 62162993
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG366500.1

Sequence Viewer

Length: 435 bp
ATGGGTATTATAGGTGGATGCAAAAACTTTAACGTCAACTTAGATACTCCGGATCTTCTTTATTACTCATACAAGGGTCCTGTATTAATCCCATCCTTGTATAGGCAACAGGACTCTATGAACCTGAAGGTACTGAAGCTTAATCTAAGGACGAACCCTCCAAATAGTCTCGATTCTCATTGGTTTCTTGCATTGCGAAAATATCTTGGGAAGTCGCCACAACTTGAAGGATTCACCTTAGAACTTCATTCTAATCCTACGAAAATCACATTTTCTCAGGAAGAACCAAGAGAAGAAGAAATTCATCCACCTTCACAAGTACGTCTTGGGTTTGTCACTGCACTTGCCCTTTTTCCAATCACCTTATCTGTAAAAATAAATCATTCCAGATATTCATTTCATGACATCAAATTCATGAAGGTTGTTGGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

144

Amino Acids

16.51

Weight (kDa)

9.24

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018426)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28000
rosa_laevigata RLG00000006564
rosa_roxburghii Rroxscaffold_5G00376920
rosa_rugosa Rorug04G0288900
rosa_samantha Rh4AG343400 Rh4BG351900 Rh4BG352000 Rh4CG366500 Rh4DG346000
rosa_wichuraiana Rw4G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 49
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 2 cut(s) 300, 410
AcuI CTGAAG 2 cut(s) 146, 155
AfaI GTAC 2 cut(s) 132, 321
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 60
Aor13HI TCCGGA 1 cut(s) 49
ApoI RAATTY 2 cut(s) 300, 410
AseI ATTAAT 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 226, 352
AvaII GGWCC 1 cut(s) 77
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 49
BseGI GGATG 3 cut(s) 23, 92, 304
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 324
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 289
BspEI TCCGGA 1 cut(s) 49
BspHI TCATGA 2 cut(s) 400, 414
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 191
BssMI GATC 1 cut(s) 52
BstDEI CTNAG 4 cut(s) 40, 146, 238, 276
BstENI CCTNNNNNAGG 1 cut(s) 100
BstF5I GGATG 3 cut(s) 23, 92, 304
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BtsCI GGATG 3 cut(s) 23, 92, 304
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 336
CciI TCATGA 2 cut(s) 400, 414
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 131, 320
CviAII CATG 2 cut(s) 401, 415
CviJI RGCY 1 cut(s) 139
CviKI_1 RGCY 1 cut(s) 139
CviQI GTAC 2 cut(s) 131, 320
DdeI CTNAG 4 cut(s) 40, 146, 238, 276
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 2 cut(s) 146, 155
EcoNI CCTNNNNNAGG 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 2 cut(s) 404, 418
FaiI YATR 6 cut(s) 11, 70, 102, 119, 402, 416
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 2 cut(s) 400, 414
FokI GGATG 3 cut(s) 30, 79, 291
HapII CCGG 1 cut(s) 50
Hin1II CATG 2 cut(s) 404, 418
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 113, 173, 231
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 226, 352
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 6 cut(s) 50, 170, 278, 387, 401, 415
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 4 cut(s) 121, 221, 321, 412
HpyCH4IV ACGT 2 cut(s) 33, 322
HpyCH4V TGCA 3 cut(s) 21, 191, 341
HpyF3I CTNAG 4 cut(s) 40, 146, 238, 276
HpySE526I ACGT 2 cut(s) 33, 322
Hsp92II CATG 2 cut(s) 404, 418
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 6 cut(s) 63, 93, 95, 137, 263, 400
LweI GCATC 1 cut(s) 8
MaeII ACGT 2 cut(s) 33, 322
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 4 cut(s) 47, 293, 305, 308
MflI RGATCY 1 cut(s) 52
MluCI AATT 2 cut(s) 300, 410
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 1 cut(s) 168
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 4 cut(s) 30, 86, 141, 433
MspI CCGG 1 cut(s) 50
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 404, 418
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 334
PagI TCATGA 2 cut(s) 400, 414
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 173, 231
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 2 cut(s) 132, 321
RsaNI GTAC 2 cut(s) 131, 320
SaqAI TTAA 4 cut(s) 30, 86, 141, 433
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 107
SfaNI GCATC 1 cut(s) 8
SinI GGWCC 1 cut(s) 77
Sse9I AATT 2 cut(s) 300, 410
TaiI ACGT 2 cut(s) 36, 325
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 300, 410
TfiI GAWTC 2 cut(s) 173, 231
Tru1I TTAA 4 cut(s) 30, 86, 141, 433
Tru9I TTAA 4 cut(s) 30, 86, 141, 433
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 7 cut(s) 134, 236, 293, 384, 389, 403, 431
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 100
XapI RAATTY 2 cut(s) 300, 410
XmnI GAANNNNTTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.