Rroxscaffold_6G00404540

disease resistance RPP13-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0021726
Physical Location & Seq
Forward (+)
27036684 .. 27040502
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404540.1

Sequence Viewer

Length: 408 bp
ATGAGTCTTGGCCCACAAGCTCCTTTGGCAAATGGGCAGTCAATGCTGGAGAGGAAGCGTCTTTTTAGTCTTTCACATTTCTCGTTGTTGGATGAGTTGCAGATGGATCAGATGGATTGGGGCAAACTGCATGTTTTGTCTCCGAACTTGAGTTACTTGGAGATATTCGAATGTCCCAAACCTATTTTCGAGTTATGTGATGAGAATGGAGTGTGGAAAAAGGCAGACTCAGAGCAAGTAGACGCATCGAGTAGTAATGCTCAGAGTGGCACCAAAATGGATGTTCCCACCTCAAGGAGGCTCAAACTTAATATTGACGGTGCTTGTAGACACTGCGATGGCGGTGGGGGTATTGGGGTTATTGCCGTGATGATCTTGGTAGCTTCAAAGGAGCCTGGTCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

5.56

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 2 cut(s) 240, 328
AciI CCGC 1 cut(s) 342
AclWI GGATC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 294, 297
AgsI TTSAA 1 cut(s) 387
AjnI CCWGG 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 2 cut(s) 20, 383
AluI AGCT 2 cut(s) 20, 383
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 114
AoxI GGCC 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspS9I GGNCC 2 cut(s) 11, 398
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 269
BccI CCATC 3 cut(s) 97, 106, 332
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 11, 398
BmiI GGNNCC 2 cut(s) 271, 393
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 169, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 297
BseBI CCWGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 97, 286
BseLI CCNNNNNNNGG 2 cut(s) 294, 297
BseMII CTCAG 2 cut(s) 243, 275
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 269
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 294, 297
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 12
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 106, 372
BspACI CCGC 1 cut(s) 342
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 242, 274
BspLI GGNNCC 2 cut(s) 271, 393
BspPI GGATC 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 269
BssMI GATC 2 cut(s) 106, 372
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 229, 261
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 97, 286
BstKTI GATC 2 cut(s) 109, 375
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 106, 372
BstMWI GCNNNNNNNGC 2 cut(s) 26, 43
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 394
BsuRI GGCC 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 97, 286
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 11, 398
CseI GACGC 2 cut(s) 47, 251
CviAII CATG 1 cut(s) 131
CviJI RGCY 5 cut(s) 12, 20, 301, 383, 394
CviKI_1 RGCY 5 cut(s) 12, 20, 301, 383, 394
DdeI CTNAG 2 cut(s) 229, 261
DpnI GATC 2 cut(s) 108, 374
DpnII GATC 2 cut(s) 106, 372
Eco47I GGWCC 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 394
FaeI CATG 1 cut(s) 134
FaiI YATR 2 cut(s) 132, 196
FaqI GGGAC 1 cut(s) 159
FatI CATG 1 cut(s) 130
FblI GTMKAC 2 cut(s) 240, 328
FokI GGATG 2 cut(s) 104, 293
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 12
HgaI GACGC 2 cut(s) 47, 251
Hin1II CATG 1 cut(s) 134
HinfI GANTC 2 cut(s) 4, 227
Hpy166II GTNNAC 2 cut(s) 241, 329
Hpy188I TCNGA 4 cut(s) 111, 144, 232, 264
Hpy8I GTNNAC 2 cut(s) 241, 329
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 100, 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 43
HpyF3I CTNAG 2 cut(s) 229, 261
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 2 cut(s) 106, 372
LmnI GCTCC 2 cut(s) 25, 391
LpnPI CCDG 2 cut(s) 32, 381
LweI GCATC 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 108, 374
MboI GATC 2 cut(s) 106, 372
MlyI GAGTC 2 cut(s) 13, 221
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 3 cut(s) 45, 291, 301
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 275, 336
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 26, 43
NdeII GATC 2 cut(s) 106, 372
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 271, 393
NspI RCATGY 1 cut(s) 134
NspV TTCGAA 1 cut(s) 168
PleI GAGTC 2 cut(s) 12, 221
PpsI GAGTC 2 cut(s) 12, 221
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 271, 393
PspPI GGNCC 2 cut(s) 11, 398
PsrI GAACNNNNNNTAC 2 cut(s) 137, 169
RseI CAYNNNNRTG 2 cut(s) 275, 336
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 2 cut(s) 106, 372
Sau96I GGNCC 2 cut(s) 11, 398
SchI GAGTC 2 cut(s) 13, 221
ScrFI CCNGG 1 cut(s) 396
SetI ASST 4 cut(s) 22, 184, 293, 385
SfaNI GCATC 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 275, 336
SmlI CTYRAG 2 cut(s) 148, 292
SmoI CTYRAG 2 cut(s) 148, 292
SsiI CCGC 1 cut(s) 342
SspI AATATT 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 3 cut(s) 168, 189, 248
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 338
TspRI CASTG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 295
XceI RCATGY 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 240, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.