Rroxscaffold_6G00404960

disease resistance RPP13-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0021726
Physical Location & Seq
Forward (+)
27434412 .. 27444391
9980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404960.1

Sequence Viewer

Length: 441 bp
ATGGATTGTCAATGGACGACTGTCCAAATGGTGCATCTAAAGTTGTTGGATGAACTGCAGATGGATTGGGGAAAACTGCAAGGCTTGTTTCCGAACTTGAGTTACTTGGAGATATTCAAATGTCCCAAACTTAGTTTCGACCAATGTGATGAGAATGGAGTGTGGAAAAGGGAAGACTCAGAACAAGGAGAAGCATCGAGTAGTACATTTCATATTCCATTTTCAAATTCCCCGTCCGGCGAGACGGGTCAAGCGAGCGAGGTGAGCCACCGCGCCAAGCACGCCGTGGACAAGACGAAAGTGGTAAACCCTAGACCAAGAACCAGTCGGGTTTTGTGGAACCTTGAGAGAATCGCCGAACTACTTCTAACAAAAGACAATGAGTTACGGCTCGGGCACTTGGTTGGACTCGTTGTTCAAGTTCTTGCTGCTGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

146

Amino Acids

16.55

Weight (kDa)

5.94

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 226
AdeI CACNNNGTG 1 cut(s) 286
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 3 cut(s) 118, 225, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
Alw26I GTCTC 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 392
ApeKI GCWGC 2 cut(s) 428, 431
ApoI RAATTY 1 cut(s) 226
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 415, 418
BccI CCATC 1 cut(s) 55
BceAI ACGGC 2 cut(s) 269, 404
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 429, 432
BlsI GCNGC 2 cut(s) 430, 433
BmeT110I CYCGRG 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 341
BmsI GCATC 2 cut(s) 43, 203
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 118, 365
BsaJI CCNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 2 cut(s) 415, 418
Bsh1236I CGCG 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 399
BspACI CCGC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 256, 282
BstDEI CTNAG 2 cut(s) 131, 178
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 275
BstMAI GTCTC 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 264, 281
BstPAI GACNNNNGTC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 415, 418
BstV2I GAAGAC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 256, 282
CfoI GCGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 204
CviJI RGCY 3 cut(s) 84, 267, 391
CviKI_1 RGCY 3 cut(s) 84, 267, 391
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 2 cut(s) 131, 178
DraIII CACNNNGTG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 236
FaiI YATR 1 cut(s) 213
FaqI GGGAC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 429, 432
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 429, 432
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 274
GluI GCNGC 2 cut(s) 429, 432
HapII CCGG 1 cut(s) 237
HhaI GCGC 1 cut(s) 275
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 3 cut(s) 176, 351, 408
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 289, 307
Hpy188I TCNGA 2 cut(s) 93, 181
Hpy8I GTNNAC 2 cut(s) 289, 307
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 34, 58, 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 281
HpyF3I CTNAG 2 cut(s) 131, 178
HspAI GCGC 1 cut(s) 273
LpnPI CCDG 2 cut(s) 250, 337
Lsp1109I GCAGC 2 cut(s) 415, 418
LweI GCATC 2 cut(s) 43, 203
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 101, 384
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 1 cut(s) 226
MlyI GAGTC 2 cut(s) 170, 402
MmeI TCCRAC 2 cut(s) 27, 385
MnlI CCTC 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 363
MspI CCGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 264, 281
NlaIV GGNNCC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 2 cut(s) 430, 433
PleI GAGTC 2 cut(s) 170, 402
PpsI GAGTC 2 cut(s) 170, 402
PshAI GACNNNNGTC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 341
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SatI GCNGC 2 cut(s) 429, 432
SchI GAGTC 2 cut(s) 170, 402
SduI GDGCHC 1 cut(s) 399
SetI ASST 2 cut(s) 264, 345
SfaNI GCATC 2 cut(s) 43, 203
SfcI CTRYAG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 97, 344
SmoI CTYRAG 2 cut(s) 97, 344
Sse9I AATT 1 cut(s) 226
SsiI CCGC 1 cut(s) 271
SspMI CTAG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 138, 197
TasI AATT 1 cut(s) 226
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 1 cut(s) 351
TseI GCWGC 2 cut(s) 428, 431
TspDTI ATGAA 2 cut(s) 66, 200
XapI RAATTY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.